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Gene Dmel\CG32278

General Information
Symbol	Dmel\CG32278	Species	D. melanogaster
Name		Annotation symbol	CG32278
Feature type	protein_coding_gene	FlyBase ID	FBgn0052278
Gene Model Status	Current	Stock availability	6 publicly available
Also Known As	CG12032
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	63B8-63B8	Sequence location	3L:3,169,286..3,171,767 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG32278 (FBgn0052278). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 7 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 06-18 hour embryonic stages, during late pupal stages. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1633225_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG32278. Gene sequence location is 3L:3169286..3171767.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 63B8-63B8   Limits computationally determined from genome sequence between P{PZ}l(3)0680306803 and P{PZ}kst01318
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG32278 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG32278-RA FBtr0073033  NM_167996   845   111
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG32278-PA   FBpp0072897   12.1   111   11.23     NP_728822   AAF47727
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014296 AAF47727   AI406176   AY060799 AAL28347   BI567129   BI568591   BI573978   BI573979   BI574617   BI574671   BI575831   BI583766   BI583793   BI585151   BI585722   BI586758   BI587240   BI587243   BI587816   BI587981   BI587986   BI588151   BI588628   BI591937   BI592601   BI606508   BI607054   BI610677   BI611461   BI612288   BI615601   BI618550   BI625638   BI626933   BI627229   BI627397   BI627750   BP541706   CO268429   CO290857   CZ479137   EC064015   EC076952   EC197147   EC242993   GH942221   GH942748   GH943537   GH944155   GH944619   GH945394   GH945530   GH945889   GH946127   GH946240   GH947487   GH947980   GH951232   GH952860   GH953219   GH955019   GH955190   GH956544   GH958449   GH960292   GH960300   GH960690   GH960836   GH961206   GH964463   GH964524   GH967502   GH968028   GH968597   GH968830   GH968969   GH970321   GH970645   GH970847   GH975032   GH976667   GH979056   GH979409   GH979817   GH981044   GH981212   GH982597   GH983185   GH983365   GH983517   GH983627   GH983861   GH984359
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VZU0
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | faint & ubiquitous   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) salivary gland body primordium   (Fisher et al., 2012) Comment:reported as salivary gland primordium trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   dorsal pharyngeal muscle   (Fisher et al., 2012) embryonic anal pad   (Fisher et al., 2012) embryonic hindgut   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval muscle system   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    318.4 Larval Midgut    102.1 Larval Hindgut    172.5 Larval Malpighian Tubules    178.9 Larval Fat Body    83.6 Larval Salivary Gland    185.3 Larval Trachea    190.075 Larval Carcass    120.475 Adult Head    649.2 Adult Eye    1424.375 Adult Brain    752.4 Adult Thoracic-Abdominal Ganglion    843.8 Adult Crop    215.1 Adult Midgut    172.1 Adult Hindgut    215.8 Adult Malpighian Tubules    251.1 Adult Fat Body    199.1 Adult Salivary Gland    203 Adult Heart    175 Adult VirginFemale Spermatheca    207.7 Adult InseminatedFemale Spermatheca    270.7 Adult Ovary    380.2 Adult Testis    64.3 Adult Male Accessory Gland    403.3 Adult Carcass    243.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    318.4 Larval Midgut    102.1 Larval Hindgut    172.5 Larval Malpighian Tubules    178.9 Larval Fat Body    83.6 Larval Salivary Gland    185.3 Larval Trachea    190.075 Larval Carcass    120.475 Adult Head  (649.2) Adult Eye  (1424.375) Adult Brain  (752.4) Adult Thoracic-Abdominal Ganglion  (843.8) Adult Crop    215.1 Adult Midgut    172.1 Adult Hindgut    215.8 Adult Malpighian Tubules    251.1 Adult Fat Body    199.1 Adult Salivary Gland    203 Adult Heart    175 Adult VirginFemale Spermatheca    207.7 Adult InseminatedFemale Spermatheca    270.7 Adult Ovary    380.2 Adult Testis    64.3 Adult Male Accessory Gland    403.3 Adult Carcass    243.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    318.4 Larval Midgut    102.1 Larval Hindgut    172.5 Larval Malpighian Tubules    178.9 Larval Fat Body    83.6 Larval Salivary Gland    185.3 Larval Trachea    190.075 Larval Carcass    120.475 Adult Head    649.2 Adult Eye  (1424.375) Adult Brain    752.4 Adult Thoracic-Abdominal Ganglion    843.8 Adult Crop    215.1 Adult Midgut    172.1 Adult Hindgut    215.8 Adult Malpighian Tubules    251.1 Adult Fat Body    199.1 Adult Salivary Gland    203 Adult Heart    175 Adult VirginFemale Spermatheca    207.7 Adult InseminatedFemale Spermatheca    270.7 Adult Ovary    380.2 Adult Testis    64.3 Adult Male Accessory Gland    403.3 Adult Carcass    243.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    318.4 Larval Midgut    102.1 Larval Hindgut    172.5 Larval Malpighian Tubules    178.9 Larval Fat Body    83.6 Larval Salivary Gland    185.3 Larval Trachea    190.075 Larval Carcass    120.475 Adult Head    649.2 Adult Eye    1424.375 Adult Brain    752.4 Adult Thoracic-Abdominal Ganglion    843.8 Adult Crop    215.1 Adult Midgut    172.1 Adult Hindgut    215.8 Adult Malpighian Tubules    251.1 Adult Fat Body    199.1 Adult Salivary Gland    203 Adult Heart    175 Adult VirginFemale Spermatheca    207.7 Adult InseminatedFemale Spermatheca    270.7 Adult Ovary    380.2 Adult Testis    64.3 Adult Male Accessory Gland    403.3 Adult Carcass    243.6 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    318.4 Larval Midgut    102.1 Larval Hindgut    172.5 Larval Malpighian Tubules    178.9 Larval Fat Body    83.6 Larval Salivary Gland    185.3 Larval Trachea    190.075 Larval Carcass    120.475 Adult Head    649.2 Adult Eye    1424.375 Adult Brain    752.4 Adult Thoracic-Abdominal Ganglion    843.8 Adult Crop    215.1 Adult Midgut    172.1 Adult Hindgut    215.8 Adult Malpighian Tubules    251.1 Adult Fat Body    199.1 Adult Salivary Gland    203 Adult Heart    175 Adult VirginFemale Spermatheca    207.7 Adult InseminatedFemale Spermatheca    270.7 Adult Ovary    380.2 Adult Testis    64.3 Adult Male Accessory Gland    403.3 Adult Carcass    243.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    318.4 Larval Midgut    102.1 Larval Hindgut    172.5 Larval Malpighian Tubules    178.9 Larval Fat Body    83.6 Larval Salivary Gland    185.3 Larval Trachea    190.075 Larval Carcass    120.475 Adult Head  649.2 Adult Eye  (1424.375) Adult Brain  752.4 Adult Thoracic-Abdominal Ganglion  (843.8) Adult Crop    215.1 Adult Midgut    172.1 Adult Hindgut    215.8 Adult Malpighian Tubules    251.1 Adult Fat Body    199.1 Adult Salivary Gland    203 Adult Heart    175 Adult VirginFemale Spermatheca    207.7 Adult InseminatedFemale Spermatheca    270.7 Adult Ovary    380.2 Adult Testis    64.3 Adult Male Accessory Gland    403.3 Adult Carcass    243.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    318.4 Larval Midgut    102.1 Larval Hindgut    172.5 Larval Malpighian Tubules    178.9 Larval Fat Body    83.6 Larval Salivary Gland    185.3 Larval Trachea    190.075 Larval Carcass    120.475 Adult Head    649.2 Adult Eye  1424.375 Adult Brain    752.4 Adult Thoracic-Abdominal Ganglion    843.8 Adult Crop    215.1 Adult Midgut    172.1 Adult Hindgut    215.8 Adult Malpighian Tubules    251.1 Adult Fat Body    199.1 Adult Salivary Gland    203 Adult Heart    175 Adult VirginFemale Spermatheca    207.7 Adult InseminatedFemale Spermatheca    270.7 Adult Ovary    380.2 Adult Testis    64.3 Adult Male Accessory Gland    403.3 Adult Carcass    243.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    318.4 Larval Midgut    102.1 Larval Hindgut    172.5 Larval Malpighian Tubules    178.9 Larval Fat Body    83.6 Larval Salivary Gland    185.3 Larval Trachea    190.075 Larval Carcass    120.475 Adult Head    649.2 Adult Eye    1424.375 Adult Brain    752.4 Adult Thoracic-Abdominal Ganglion    843.8 Adult Crop    215.1 Adult Midgut    172.1 Adult Hindgut    215.8 Adult Malpighian Tubules    251.1 Adult Fat Body    199.1 Adult Salivary Gland    203 Adult Heart    175 Adult VirginFemale Spermatheca    207.7 Adult InseminatedFemale Spermatheca    270.7 Adult Ovary    380.2 Adult Testis    64.3 Adult Male Accessory Gland    403.3 Adult Carcass    243.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    649.2   NA  Eye    1424.375   NA  Brain    752.4   318.4  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    843.8   NA  Crop    215.1   102.1  Midgut    172.1   172.5  Hindgut    215.8   178.9  Malpighian Tubules    251.1   83.6  Fat Body    199.1   185.3  Salivary Gland    203   NA  Heart    175   190.075  Trachea    NA   NA  VirginFemale Spermatheca    207.7   NA  InseminatedFemale Spermatheca    270.7   NA  Ovary    380.2   NA  Testis    64.3   NA  Male Accessory Gland    403.3   120.475  Carcass    243.6 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    11 central nervous system, pupae P8    30 head, virgin 1-day female    37 head, virgin 4-day female    34 head, virgin 20-day female    19 head, mated 1-day female    38 head, mated 4-day female    32 head, mated 20-day female    19 head, mated 1-day male    53 head, mated 4-day male    47 head, mated 20-day male    49 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    8 digestive system, 4-day adult    11 digestive system, 20-day adult    6 fat body, larvae L3 wandering    2 fat body, white prepupae    5 fat body, pupae P8    25 carcass, larvae L3 wandering    9 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    19 ovary, virgin 4-day female    30 ovary, mated 4-day female    27 testis, mated 4-day male    9 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    11 central nervous system, pupae P8  (30) head, virgin 1-day female  (37) head, virgin 4-day female  (34) head, virgin 20-day female    19 head, mated 1-day female  (38) head, mated 4-day female  (32) head, mated 20-day female    19 head, mated 1-day male  (53) head, mated 4-day male  (47) head, mated 20-day male  (49) salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    8 digestive system, 4-day adult    11 digestive system, 20-day adult    6 fat body, larvae L3 wandering    2 fat body, white prepupae    5 fat body, pupae P8    25 carcass, larvae L3 wandering    9 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    19 ovary, virgin 4-day female  (30) ovary, mated 4-day female  (27) testis, mated 4-day male    9 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    11 central nervous system, pupae P8    30 head, virgin 1-day female    37 head, virgin 4-day female    34 head, virgin 20-day female    19 head, mated 1-day female    38 head, mated 4-day female    32 head, mated 20-day female    19 head, mated 1-day male    53 head, mated 4-day male    47 head, mated 20-day male    49 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    8 digestive system, 4-day adult    11 digestive system, 20-day adult    6 fat body, larvae L3 wandering    2 fat body, white prepupae    5 fat body, pupae P8    25 carcass, larvae L3 wandering    9 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    19 ovary, virgin 4-day female    30 ovary, mated 4-day female    27 testis, mated 4-day male    9 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    11 central nervous system, pupae P8    30 head, virgin 1-day female    37 head, virgin 4-day female    34 head, virgin 20-day female    19 head, mated 1-day female    38 head, mated 4-day female    32 head, mated 20-day female    19 head, mated 1-day male    53 head, mated 4-day male    47 head, mated 20-day male    49 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    8 digestive system, 4-day adult    11 digestive system, 20-day adult    6 fat body, larvae L3 wandering    2 fat body, white prepupae    5 fat body, pupae P8    25 carcass, larvae L3 wandering    9 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    19 ovary, virgin 4-day female    30 ovary, mated 4-day female    27 testis, mated 4-day male    9 accessory gland, mated 4-day male    16 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    11 central nervous system, pupae P8    30 head, virgin 1-day female    37 head, virgin 4-day female    34 head, virgin 20-day female    19 head, mated 1-day female    38 head, mated 4-day female    32 head, mated 20-day female    19 head, mated 1-day male    53 head, mated 4-day male    47 head, mated 20-day male    49 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    8 digestive system, 4-day adult    11 digestive system, 20-day adult    6 fat body, larvae L3 wandering    2 fat body, white prepupae    5 fat body, pupae P8    25 carcass, larvae L3 wandering    9 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    19 ovary, virgin 4-day female    30 ovary, mated 4-day female    27 testis, mated 4-day male    9 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    11 central nervous system, pupae P8  30 head, virgin 1-day female  (37) head, virgin 4-day female  (34) head, virgin 20-day female    19 head, mated 1-day female  (38) head, mated 4-day female  32 head, mated 20-day female    19 head, mated 1-day male  (53) head, mated 4-day male  (47) head, mated 20-day male  (49) salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    8 digestive system, 4-day adult    11 digestive system, 20-day adult    6 fat body, larvae L3 wandering    2 fat body, white prepupae    5 fat body, pupae P8    25 carcass, larvae L3 wandering    9 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    19 ovary, virgin 4-day female  30 ovary, mated 4-day female  27 testis, mated 4-day male    9 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    11 central nervous system, pupae P8    30 head, virgin 1-day female    37 head, virgin 4-day female    34 head, virgin 20-day female    19 head, mated 1-day female    38 head, mated 4-day female    32 head, mated 20-day female    19 head, mated 1-day male    53 head, mated 4-day male    47 head, mated 20-day male    49 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    8 digestive system, 4-day adult    11 digestive system, 20-day adult    6 fat body, larvae L3 wandering    2 fat body, white prepupae    5 fat body, pupae P8    25 carcass, larvae L3 wandering    9 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    19 ovary, virgin 4-day female    30 ovary, mated 4-day female    27 testis, mated 4-day male    9 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    11 central nervous system, pupae P8    30 head, virgin 1-day female    37 head, virgin 4-day female    34 head, virgin 20-day female    19 head, mated 1-day female    38 head, mated 4-day female    32 head, mated 20-day female    19 head, mated 1-day male    53 head, mated 4-day male    47 head, mated 20-day male    49 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    8 digestive system, 4-day adult    11 digestive system, 20-day adult    6 fat body, larvae L3 wandering    2 fat body, white prepupae    5 fat body, pupae P8    25 carcass, larvae L3 wandering    9 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    19 ovary, virgin 4-day female    30 ovary, mated 4-day female    27 testis, mated 4-day male    9 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 06-18 hour embryonic stages, during late pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    30 embryo 04-06hr    45 embryo 06-08hr    64 embryo 08-10hr    72 embryo 10-12hr    86 embryo 12-14hr    86 embryo 14-16hr    47 embryo 16-18hr    54 embryo 18-20hr    38 embryo 20-22hr    35 embryo 22-24hr    44 larva L1    45 larva L2    49 larva L3 12hr old    28 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    20 white prepupae new    19 white prepupae 12hr    16 white prepupae 24hr    17 pupae 2d postWPP    44 pupae 3d postWPP    56 pupae 4d postWPP    28 adult male 01day    29 adult male 05day    26 adult male 30day    27 adult female 01day    32 adult female 05day    47 adult female 30day    45 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (35) embryo 02-04hr  (30) embryo 04-06hr  (45) embryo 06-08hr  (64) embryo 08-10hr  (72) embryo 10-12hr  (86) embryo 12-14hr  (86) embryo 14-16hr  (47) embryo 16-18hr  (54) embryo 18-20hr  (38) embryo 20-22hr  (35) embryo 22-24hr  (44) larva L1  (45) larva L2  (49) larva L3 12hr old  (28) larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    20 white prepupae new    19 white prepupae 12hr    16 white prepupae 24hr    17 pupae 2d postWPP  (44) pupae 3d postWPP  (56) pupae 4d postWPP  (28) adult male 01day  (29) adult male 05day  26 adult male 30day  (27) adult female 01day  (32) adult female 05day  (47) adult female 30day  (45) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    30 embryo 04-06hr    45 embryo 06-08hr    64 embryo 08-10hr    72 embryo 10-12hr    86 embryo 12-14hr    86 embryo 14-16hr    47 embryo 16-18hr    54 embryo 18-20hr    38 embryo 20-22hr    35 embryo 22-24hr    44 larva L1    45 larva L2    49 larva L3 12hr old    28 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    20 white prepupae new    19 white prepupae 12hr    16 white prepupae 24hr    17 pupae 2d postWPP    44 pupae 3d postWPP    56 pupae 4d postWPP    28 adult male 01day    29 adult male 05day    26 adult male 30day    27 adult female 01day    32 adult female 05day    47 adult female 30day    45 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    30 embryo 04-06hr    45 embryo 06-08hr    64 embryo 08-10hr    72 embryo 10-12hr    86 embryo 12-14hr    86 embryo 14-16hr    47 embryo 16-18hr    54 embryo 18-20hr    38 embryo 20-22hr    35 embryo 22-24hr    44 larva L1    45 larva L2    49 larva L3 12hr old    28 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    20 white prepupae new    19 white prepupae 12hr    16 white prepupae 24hr    17 pupae 2d postWPP    44 pupae 3d postWPP    56 pupae 4d postWPP    28 adult male 01day    29 adult male 05day    26 adult male 30day    27 adult female 01day    32 adult female 05day    47 adult female 30day    45 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    30 embryo 04-06hr    45 embryo 06-08hr    64 embryo 08-10hr    72 embryo 10-12hr    86 embryo 12-14hr    86 embryo 14-16hr    47 embryo 16-18hr    54 embryo 18-20hr    38 embryo 20-22hr    35 embryo 22-24hr    44 larva L1    45 larva L2    49 larva L3 12hr old    28 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    20 white prepupae new    19 white prepupae 12hr    16 white prepupae 24hr    17 pupae 2d postWPP    44 pupae 3d postWPP    56 pupae 4d postWPP    28 adult male 01day    29 adult male 05day    26 adult male 30day    27 adult female 01day    32 adult female 05day    47 adult female 30day    45 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (35) embryo 02-04hr  30 embryo 04-06hr  (45) embryo 06-08hr  (64) embryo 08-10hr  (72) embryo 10-12hr  (86) embryo 12-14hr  (86) embryo 14-16hr  (47) embryo 16-18hr  (54) embryo 18-20hr  (38) embryo 20-22hr  (35) embryo 22-24hr  (44) larva L1  (45) larva L2  (49) larva L3 12hr old  28 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    20 white prepupae new    19 white prepupae 12hr    16 white prepupae 24hr    17 pupae 2d postWPP  (44) pupae 3d postWPP  (56) pupae 4d postWPP  28 adult male 01day  29 adult male 05day  26 adult male 30day  27 adult female 01day  32 adult female 05day  (47) adult female 30day  (45) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    30 embryo 04-06hr    45 embryo 06-08hr    64 embryo 08-10hr    72 embryo 10-12hr    86 embryo 12-14hr    86 embryo 14-16hr    47 embryo 16-18hr    54 embryo 18-20hr    38 embryo 20-22hr    35 embryo 22-24hr    44 larva L1    45 larva L2    49 larva L3 12hr old    28 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    20 white prepupae new    19 white prepupae 12hr    16 white prepupae 24hr    17 pupae 2d postWPP    44 pupae 3d postWPP    56 pupae 4d postWPP    28 adult male 01day    29 adult male 05day    26 adult male 30day    27 adult female 01day    32 adult female 05day    47 adult female 30day    45 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    30 embryo 04-06hr    45 embryo 06-08hr    64 embryo 08-10hr    72 embryo 10-12hr    86 embryo 12-14hr    86 embryo 14-16hr    47 embryo 16-18hr    54 embryo 18-20hr    38 embryo 20-22hr    35 embryo 22-24hr    44 larva L1    45 larva L2    49 larva L3 12hr old    28 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    20 white prepupae new    19 white prepupae 12hr    16 white prepupae 24hr    17 pupae 2d postWPP    44 pupae 3d postWPP    56 pupae 4d postWPP    28 adult male 01day    29 adult male 05day    26 adult male 30day    27 adult female 01day    32 adult female 05day    47 adult female 30day    45 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    41 Schneider line 2 Sg4    17 embryonic 1182-4H    11 embryonic GM2    12 embryonic Kc167    23 embryonic S1    12 embryonic S3    13 leg disc CME L1    16 wing disc CME-W2    25 wing disc ML-DmD8    8 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    28 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    16 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    29 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    42 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (41) Schneider line 2 Sg4    17 embryonic 1182-4H    11 embryonic GM2    12 embryonic Kc167    23 embryonic S1    12 embryonic S3    13 leg disc CME L1    16 wing disc CME-W2    25 wing disc ML-DmD8    8 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    14 wing disc ML-DmD21  (28) wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    16 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1  26 CNS ML-DmBG2-c2  (29) tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC  (42) ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    41 Schneider line 2 Sg4    17 embryonic 1182-4H    11 embryonic GM2    12 embryonic Kc167    23 embryonic S1    12 embryonic S3    13 leg disc CME L1    16 wing disc CME-W2    25 wing disc ML-DmD8    8 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    28 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    16 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    29 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    42 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    41 Schneider line 2 Sg4    17 embryonic 1182-4H    11 embryonic GM2    12 embryonic Kc167    23 embryonic S1    12 embryonic S3    13 leg disc CME L1    16 wing disc CME-W2    25 wing disc ML-DmD8    8 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    28 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    16 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    29 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    42 ovary OSS    20 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    41 Schneider line 2 Sg4    17 embryonic 1182-4H    11 embryonic GM2    12 embryonic Kc167    23 embryonic S1    12 embryonic S3    13 leg disc CME L1    16 wing disc CME-W2    25 wing disc ML-DmD8    8 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    28 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    16 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    29 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    42 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (41) Schneider line 2 Sg4    17 embryonic 1182-4H    11 embryonic GM2    12 embryonic Kc167    23 embryonic S1    12 embryonic S3    13 leg disc CME L1    16 wing disc CME-W2    25 wing disc ML-DmD8    8 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    14 wing disc ML-DmD21  28 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    16 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1  26 CNS ML-DmBG2-c2  29 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC  (42) ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    41 Schneider line 2 Sg4    17 embryonic 1182-4H    11 embryonic GM2    12 embryonic Kc167    23 embryonic S1    12 embryonic S3    13 leg disc CME L1    16 wing disc CME-W2    25 wing disc ML-DmD8    8 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    28 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    16 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    29 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    42 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    41 Schneider line 2 Sg4    17 embryonic 1182-4H    11 embryonic GM2    12 embryonic Kc167    23 embryonic S1    12 embryonic S3    13 leg disc CME L1    16 wing disc CME-W2    25 wing disc ML-DmD8    8 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    28 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    16 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    29 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    42 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    9 heat shock, 4-day adult    11 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    9 heat shock, 4-day adult    11 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    9 heat shock, 4-day adult    11 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    9 heat shock, 4-day adult    11 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    9 heat shock, 4-day adult    11 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    9 heat shock, 4-day adult    11 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    9 heat shock, 4-day adult    11 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    9 heat shock, 4-day adult    11 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_19 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • GH26392 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0052278 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG32278-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG32278 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG32278GD10478 Phenotype manifest in Allele
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of CG32278 Class Mutagen Stocks Known lesion CG32278e01324 piggyBac transposase 1 -- CG32278G19274 P-element activity 1 -- CG32278MB08160 1 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG32278 Class Mutagen Stocks Known lesion CG32278GD10478 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG32278GD16816 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG32278KK112585 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG32278t17.7 in vitro construct - genomic fragment 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10478} NA P{GD16816} NA P{KK112585} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{RB}CG32278e01324 NA insertion of enhancer trap binary system Mi{ET1}CG32278MB08160 No insertion of mobile activating element P{EP}CG32278G19274 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG32278 - CG1785 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - CG3735 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - CG3817 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - CG4806 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - CG6724 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - CG6937 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - CG8939 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - Cdc5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - Mtr3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - Ns1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - Rrp40 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - Rs1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - SF1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - eIF6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - miple2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG32278 - ppan anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG32278 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0052278 DroID - A comprehensive database of gene and protein interactions. • FBgn0052278
Orthologs
OrthoDB Orthologs (12) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6R50PQ Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6R50PQ)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG32278     Drosophila simulans   Dsim\GD13734 Y   Drosophila sechellia   Dsec\GM14541 Y   Drosophila erecta   Dere\GG15107 Y   Drosophila yakuba   Dyak\GE21331 Y   Drosophila ananassae   Dana\GF20073 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA16806 Y   Drosophila persimilis   Dper\GL24891 Y   Drosophila willistoni   Dwil\GK25496 Y   Drosophila virilis   Dvir\GJ13176     Drosophila mojavensis   Dmoj\GI13348 Y   Drosophila grimshawi   Dgri\GH16198 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD13734 Drosophila sechellia Dsec\GM14541 Drosophila erecta Dere\GG15107 Drosophila yakuba Dyak\GE21331 Drosophila ananassae Dana\GF20073 Drosophila pseudoobscura pseudoobscura Dpse\GA16806 Drosophila persimilis Dper\GL24891 Drosophila willistoni Dwil\GK25496 Drosophila mojavensis Dmoj\GI13348 Drosophila grimshawi Dgri\GH16198
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	28110 w*; P{EP}CG32278G19274 CG32281G19274/TM6B, Tb1 25588 w1118; Mi{ET1}CG32278MB08160 CG32281MB08160/TM6C, Sb1
Harvard	- PBac{RB}CG32278e01324
VDRC	v103230 P{KK112585}VIE-260B v21472 w1118; P{GD10478}v21472 v50247 w1118; P{GD16816}v50247/TM3
Genomic Clones ( 1 )
	BACR48E19 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 89 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH26392
Other clones	DPiM_GH26392
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RH09509 RH10340 RH16246 RH17683 RH22452 RH22482 RH24624 RH25357 RH25912 RH25983 RH26854 RH27760 RH27763 RH28702 RH28938 RH28949 RH29243 RH30014 RH32151 RH36984 RH40187 RH40713 RH45286 RH49410 RH66105 RH68076 RH68482 RH68691 RH69157 RH73016 RH74040
Other clones	77076 119859 CK01.119D.F1 CK01.120A.C2 EK075407 EK091321 FGC004E08 RH09418 RP004033358 RP004076707 RP004101819 RP004104952 RP004132906 RP004138446 RP004159106 RP004199312 RP004203313 RP004203789 RP004207712 RP004208317 RP004208933 RP004210567 RP004212325 RP004219262 RP004221506 RP004222634 RP004224067 RP004230079 RP004230786 RP004234814 RP004235883 RP004239058 RP004243786 RP004247330 RP004249483 RP004250414 RP004253604 RP004257330 RP004257815 RP004313652 RP004351741 RP004421063 RP004424022 RP004428183 RP004447886 RP004449274 RP004452285 RP004460178 RP004466527 RP004502414 RP004503563 RP004536764 RP004542007 RP004544077 RP004546959 RP004547051
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0052278 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38382
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	Annotation CG12032 split into CG32278 and CG32281 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_167996 RefSeq (Proteins) • NP_728822 DDBJ / EMBL / GenBank • AAF47727 AAL28347 AI406176 AY060799 CZ479137 Entrez Gene - A searchable database of RefSeq genes. • 38382 UniProtKB/TrEMBL • Q9VZU0
Other Crossreferences
	BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GH26392
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0052278 DroID - A comprehensive database of gene and protein interactions. • FBgn0052278 DRSC - Results from RNAi screens. • FBgn0052278 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0052278 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG32278-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0052278 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38382 modMine - Data generated by the modENCODE project. • FBgn0052278
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	CG12032 (Chamoun et al., 2001, Lee and Treisman, 2001, ) CG32278 (Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
	FBgn0035408
References ( 16 )
Research paper	Chamoun et al., 2001, Science 293(5537): 2080--2084 Skinny hedgehog, an acyltransferase required for palmitoylation and activity of the hedgehog signal. [FBrf0138534] Lee and Treisman, 2001, Curr. Biol. 11(14): 1147--1152 Sightless has homology to transmembrane acyltransferases and is required to generate active Hedgehog protein. [FBrf0137202]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Bellen, 2009.7.1, BDGP_2009_0702.GenExel.xml BDGP_2009_0702.GenExel.xml [FBrf0208131] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Bellen, 2008.8.29, set806.xml set806.xml [FBrf0205581] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file) Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]