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Gene Dmel\Tango5

General Information
Symbol	Dmel\Tango5	Species	D. melanogaster
Name	Transport and Golgi organization 5	Annotation symbol	CG32675
Feature type	protein_coding_gene	FlyBase ID	FBgn0052675
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	9E4-9E6	Sequence location	X:10,654,081..10,658,270 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Transport and Golgi organization 5 is referred to in FlyBase by the symbol Dmel\Tango5 (CG32675, FBgn0052675). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: Golgi organization; protein secretion. 7 alleles are reported. No phenotypic data is available. It has 5 annotated transcripts and 5 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, adult hindgut, larval/adult Malpighian tubules, larval/adult fat body, larval/adult salivary gland, adult ovary, adult male reproductive system, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1634561_s_at completely aligns to an exonic region common to each of the 4 FlyBase-annotated transcript isoforms of Tango5. Gene sequence location is X:10654081..10658270.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 9E4-9E6   Limits computationally determined from genome sequence between P{EP}EP1645 and P{EP}Atg8aEP362&P{EP}CG1826EP1098
Experimentally Determined Cytological Location
Cytogenetic map Notes References 9E3-9E4   (determined by in situ hybridisation)   (Peter et al., 2002)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Tango5 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Tango5-RA FBtr0071500  NM_167242   2122   530 Tango5-RB FBtr0071499  NM_167244   1890   428 Tango5-RC FBtr0071501  NM_167243   2315   530 Tango5-RD FBtr0300569  NM_001169245   2207   530 Tango5-RE FBtr0334457  NM_001272501   3141   530
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Tango5-PA   FBpp0071429   58.2   530   10.60     NP_727444   AAF46618 Tango5-PB   FBpp0071428   47.9   428   10.23     NP_727446   AAF46619 Tango5-PC   FBpp0071430   58.2   530   10.60     NP_727445   AAN09266 Tango5-PD   FBpp0289796   58.2   530   10.60     NP_001162716   ACZ95251 Tango5-PE   FBpp0306533   58.2   530   10.60     NP_001259430   AGB95273
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA439944   AA698699   AE014298 AAF46618   AE014298 AAF46619   AE014298 AAN09266   AE014298 ACZ95251   AE014298 AGB95273   AI515555   AI532564   AI543266   BE977793   BF503188   BG634779   BH011495   BI168440   BI168452   BI173786   BI216832   BI369330   BI607453   BI624370   BI626706   BP541138   BT099925   BT133079   CA807375   CO187013   CO294720   CO303955   CO305887   CO311776   CO341196   EC062438   EC201578   EC202382   EC203484   EC240806   EC247369   EC248268   EC258252   GH748165   GH750209   GH770252   GH771266   GH771469   GH774568   GH774908   GH784994   GH785292   GH785837   GH787781   GH789703   GH795865   GH800526   GH805909   GH806665   GH807114   GH807522   GH807905   GH812603   GH813581   GH815234   GH816708   GH818716   GH818721   GH820840   GH830690   GH833600   GH835161   GH839374   GH840279   GH841040   GH842239   GH853035   GH853944   GH854228   GH856270   GH857740   GH860409   GH860761   GH863981   GH864034   GH867895   GH868808   GH874897   GH879131   GH879923   GH881388   GH881908   GH882381   GH888221   GH888554   GH891975   GH893852   GH894306   GH895817   GH898392   GH898516   GH900471   GH900669   GH908497   GH910508   GH915039   GH921349   GH926443   GH927194   GH928727   GH931712   GH933214   GH935611   GH938624
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q7KVQ7 Q9W2S1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
endoplasmic reticulum inferred from direct assay (Bard et al., 2006)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, adult hindgut, larval/adult Malpighian tubules, larval/adult fat body, larval/adult salivary gland, adult ovary, adult male reproductive system, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    100.5 Larval Midgut    128 Larval Hindgut    87.7 Larval Malpighian Tubules    150.1 Larval Fat Body    132.7 Larval Salivary Gland    125.3 Larval Trachea    37.45 Larval Carcass    55.675 Adult Head    124.2 Adult Eye    104.225 Adult Brain    188.3 Adult Thoracic-Abdominal Ganglion    220.2 Adult Crop    110.1 Adult Midgut    188.4 Adult Hindgut    141.5 Adult Malpighian Tubules    119.2 Adult Fat Body    159.9 Adult Salivary Gland    209 Adult Heart    80.925 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    50.4 Adult Ovary    128 Adult Testis    163 Adult Male Accessory Gland    214.5 Adult Carcass    144.8 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    100.5 Larval Midgut    128 Larval Hindgut    87.7 Larval Malpighian Tubules    150.1 Larval Fat Body    132.7 Larval Salivary Gland    125.3 Larval Trachea    37.45 Larval Carcass    55.675 Adult Head    124.2 Adult Eye    104.225 Adult Brain    188.3 Adult Thoracic-Abdominal Ganglion    220.2 Adult Crop    110.1 Adult Midgut    188.4 Adult Hindgut    141.5 Adult Malpighian Tubules    119.2 Adult Fat Body    159.9 Adult Salivary Gland    209 Adult Heart    80.925 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    50.4 Adult Ovary    128 Adult Testis    163 Adult Male Accessory Gland    214.5 Adult Carcass    144.8 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    100.5 Larval Midgut    128 Larval Hindgut    87.7 Larval Malpighian Tubules    150.1 Larval Fat Body    132.7 Larval Salivary Gland    125.3 Larval Trachea    37.45 Larval Carcass    55.675 Adult Head    124.2 Adult Eye    104.225 Adult Brain    188.3 Adult Thoracic-Abdominal Ganglion    220.2 Adult Crop    110.1 Adult Midgut    188.4 Adult Hindgut    141.5 Adult Malpighian Tubules    119.2 Adult Fat Body    159.9 Adult Salivary Gland    209 Adult Heart    80.925 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    50.4 Adult Ovary    128 Adult Testis    163 Adult Male Accessory Gland    214.5 Adult Carcass    144.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    100.5 Larval Midgut    128 Larval Hindgut    87.7 Larval Malpighian Tubules    150.1 Larval Fat Body    132.7 Larval Salivary Gland    125.3 Larval Trachea    37.45 Larval Carcass    55.675 Adult Head    124.2 Adult Eye    104.225 Adult Brain    188.3 Adult Thoracic-Abdominal Ganglion    220.2 Adult Crop    110.1 Adult Midgut    188.4 Adult Hindgut    141.5 Adult Malpighian Tubules    119.2 Adult Fat Body    159.9 Adult Salivary Gland    209 Adult Heart    80.925 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    50.4 Adult Ovary    128 Adult Testis    163 Adult Male Accessory Gland    214.5 Adult Carcass    144.8 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    100.5 Larval Midgut    128 Larval Hindgut    87.7 Larval Malpighian Tubules    150.1 Larval Fat Body    132.7 Larval Salivary Gland    125.3 Larval Trachea    37.45 Larval Carcass    55.675 Adult Head    124.2 Adult Eye    104.225 Adult Brain    188.3 Adult Thoracic-Abdominal Ganglion    220.2 Adult Crop    110.1 Adult Midgut    188.4 Adult Hindgut    141.5 Adult Malpighian Tubules    119.2 Adult Fat Body    159.9 Adult Salivary Gland    209 Adult Heart    80.925 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    50.4 Adult Ovary    128 Adult Testis    163 Adult Male Accessory Gland    214.5 Adult Carcass    144.8 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    100.5 Larval Midgut    128 Larval Hindgut    87.7 Larval Malpighian Tubules    150.1 Larval Fat Body    132.7 Larval Salivary Gland    125.3 Larval Trachea    37.45 Larval Carcass    55.675 Adult Head    124.2 Adult Eye    104.225 Adult Brain    188.3 Adult Thoracic-Abdominal Ganglion    220.2 Adult Crop    110.1 Adult Midgut    188.4 Adult Hindgut    141.5 Adult Malpighian Tubules    119.2 Adult Fat Body    159.9 Adult Salivary Gland    209 Adult Heart    80.925 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    50.4 Adult Ovary    128 Adult Testis    163 Adult Male Accessory Gland    214.5 Adult Carcass    144.8 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    100.5 Larval Midgut    128 Larval Hindgut    87.7 Larval Malpighian Tubules    150.1 Larval Fat Body    132.7 Larval Salivary Gland    125.3 Larval Trachea    37.45 Larval Carcass    55.675 Adult Head    124.2 Adult Eye    104.225 Adult Brain    188.3 Adult Thoracic-Abdominal Ganglion    220.2 Adult Crop    110.1 Adult Midgut    188.4 Adult Hindgut    141.5 Adult Malpighian Tubules    119.2 Adult Fat Body    159.9 Adult Salivary Gland    209 Adult Heart    80.925 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    50.4 Adult Ovary    128 Adult Testis    163 Adult Male Accessory Gland    214.5 Adult Carcass    144.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    100.5 Larval Midgut    128 Larval Hindgut    87.7 Larval Malpighian Tubules    150.1 Larval Fat Body    132.7 Larval Salivary Gland    125.3 Larval Trachea    37.45 Larval Carcass    55.675 Adult Head    124.2 Adult Eye    104.225 Adult Brain    188.3 Adult Thoracic-Abdominal Ganglion    220.2 Adult Crop    110.1 Adult Midgut    188.4 Adult Hindgut    141.5 Adult Malpighian Tubules    119.2 Adult Fat Body    159.9 Adult Salivary Gland    209 Adult Heart    80.925 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    50.4 Adult Ovary    128 Adult Testis    163 Adult Male Accessory Gland    214.5 Adult Carcass    144.8 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    124.2   NA  Eye    104.225   NA  Brain    188.3   100.5  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    220.2   NA  Crop    110.1   128  Midgut    188.4   87.7  Hindgut    141.5   150.1  Malpighian Tubules    119.2   132.7  Fat Body    159.9   125.3  Salivary Gland    209   NA  Heart    80.925   37.45  Trachea    NA   NA  VirginFemale Spermatheca    74.4   NA  InseminatedFemale Spermatheca    50.4   NA  Ovary    128   NA  Testis    163   NA  Male Accessory Gland    214.5   55.675  Carcass    144.8 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    16 central nervous system, pupae P8    17 head, virgin 1-day female    16 head, virgin 4-day female    15 head, virgin 20-day female    14 head, mated 1-day female    14 head, mated 4-day female    17 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    24 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    28 digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    14 fat body, larvae L3 wandering    8 fat body, white prepupae    12 fat body, pupae P8    6 carcass, larvae L3 wandering    7 carcass, 1-day adult    10 carcass, 4-day adult    11 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    18 testis, mated 4-day male    20 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    16 central nervous system, pupae P8    17 head, virgin 1-day female    16 head, virgin 4-day female    15 head, virgin 20-day female    14 head, mated 1-day female    14 head, mated 4-day female    17 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    24 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    14 digestive system, larvae L3 wandering  (28) digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    14 fat body, larvae L3 wandering    8 fat body, white prepupae    12 fat body, pupae P8    6 carcass, larvae L3 wandering    7 carcass, 1-day adult    10 carcass, 4-day adult    11 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    18 testis, mated 4-day male    20 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    16 central nervous system, pupae P8    17 head, virgin 1-day female    16 head, virgin 4-day female    15 head, virgin 20-day female    14 head, mated 1-day female    14 head, mated 4-day female    17 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    24 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    28 digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    14 fat body, larvae L3 wandering    8 fat body, white prepupae    12 fat body, pupae P8    6 carcass, larvae L3 wandering    7 carcass, 1-day adult    10 carcass, 4-day adult    11 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    18 testis, mated 4-day male    20 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    16 central nervous system, pupae P8    17 head, virgin 1-day female    16 head, virgin 4-day female    15 head, virgin 20-day female    14 head, mated 1-day female    14 head, mated 4-day female    17 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    24 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    28 digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    14 fat body, larvae L3 wandering    8 fat body, white prepupae    12 fat body, pupae P8    6 carcass, larvae L3 wandering    7 carcass, 1-day adult    10 carcass, 4-day adult    11 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    18 testis, mated 4-day male    20 accessory gland, mated 4-day male    12 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    16 central nervous system, pupae P8    17 head, virgin 1-day female    16 head, virgin 4-day female    15 head, virgin 20-day female    14 head, mated 1-day female    14 head, mated 4-day female    17 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    24 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    28 digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    14 fat body, larvae L3 wandering    8 fat body, white prepupae    12 fat body, pupae P8    6 carcass, larvae L3 wandering    7 carcass, 1-day adult    10 carcass, 4-day adult    11 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    18 testis, mated 4-day male    20 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    16 central nervous system, pupae P8    17 head, virgin 1-day female    16 head, virgin 4-day female    15 head, virgin 20-day female    14 head, mated 1-day female    14 head, mated 4-day female    17 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    24 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    14 digestive system, larvae L3 wandering  28 digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    14 fat body, larvae L3 wandering    8 fat body, white prepupae    12 fat body, pupae P8    6 carcass, larvae L3 wandering    7 carcass, 1-day adult    10 carcass, 4-day adult    11 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    18 testis, mated 4-day male    20 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    16 central nervous system, pupae P8    17 head, virgin 1-day female    16 head, virgin 4-day female    15 head, virgin 20-day female    14 head, mated 1-day female    14 head, mated 4-day female    17 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    24 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    28 digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    14 fat body, larvae L3 wandering    8 fat body, white prepupae    12 fat body, pupae P8    6 carcass, larvae L3 wandering    7 carcass, 1-day adult    10 carcass, 4-day adult    11 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    18 testis, mated 4-day male    20 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    16 central nervous system, pupae P8    17 head, virgin 1-day female    16 head, virgin 4-day female    15 head, virgin 20-day female    14 head, mated 1-day female    14 head, mated 4-day female    17 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    24 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    28 digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    14 fat body, larvae L3 wandering    8 fat body, white prepupae    12 fat body, pupae P8    6 carcass, larvae L3 wandering    7 carcass, 1-day adult    10 carcass, 4-day adult    11 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    18 testis, mated 4-day male    20 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    25 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    16 embryo 08-10hr    14 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    15 embryo 18-20hr    17 embryo 20-22hr    19 embryo 22-24hr    17 larva L1    17 larva L2    17 larva L3 12hr old    12 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    23 white prepupae new    31 white prepupae 12hr    17 white prepupae 24hr    15 pupae 2d postWPP    15 pupae 3d postWPP    13 pupae 4d postWPP    16 adult male 01day    20 adult male 05day    24 adult male 30day    21 adult female 01day    20 adult female 05day    29 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    25 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    16 embryo 08-10hr    14 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    15 embryo 18-20hr    17 embryo 20-22hr    19 embryo 22-24hr    17 larva L1    17 larva L2    17 larva L3 12hr old    12 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    23 white prepupae new  (31) white prepupae 12hr    17 white prepupae 24hr    15 pupae 2d postWPP    15 pupae 3d postWPP    13 pupae 4d postWPP    16 adult male 01day    20 adult male 05day    24 adult male 30day    21 adult female 01day    20 adult female 05day  (29) adult female 30day  (31) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    25 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    16 embryo 08-10hr    14 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    15 embryo 18-20hr    17 embryo 20-22hr    19 embryo 22-24hr    17 larva L1    17 larva L2    17 larva L3 12hr old    12 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    23 white prepupae new    31 white prepupae 12hr    17 white prepupae 24hr    15 pupae 2d postWPP    15 pupae 3d postWPP    13 pupae 4d postWPP    16 adult male 01day    20 adult male 05day    24 adult male 30day    21 adult female 01day    20 adult female 05day    29 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    25 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    16 embryo 08-10hr    14 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    15 embryo 18-20hr    17 embryo 20-22hr    19 embryo 22-24hr    17 larva L1    17 larva L2    17 larva L3 12hr old    12 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    23 white prepupae new    31 white prepupae 12hr    17 white prepupae 24hr    15 pupae 2d postWPP    15 pupae 3d postWPP    13 pupae 4d postWPP    16 adult male 01day    20 adult male 05day    24 adult male 30day    21 adult female 01day    20 adult female 05day    29 adult female 30day    31 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    25 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    16 embryo 08-10hr    14 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    15 embryo 18-20hr    17 embryo 20-22hr    19 embryo 22-24hr    17 larva L1    17 larva L2    17 larva L3 12hr old    12 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    23 white prepupae new    31 white prepupae 12hr    17 white prepupae 24hr    15 pupae 2d postWPP    15 pupae 3d postWPP    13 pupae 4d postWPP    16 adult male 01day    20 adult male 05day    24 adult male 30day    21 adult female 01day    20 adult female 05day    29 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    25 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    16 embryo 08-10hr    14 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    15 embryo 18-20hr    17 embryo 20-22hr    19 embryo 22-24hr    17 larva L1    17 larva L2    17 larva L3 12hr old    12 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    23 white prepupae new  31 white prepupae 12hr    17 white prepupae 24hr    15 pupae 2d postWPP    15 pupae 3d postWPP    13 pupae 4d postWPP    16 adult male 01day    20 adult male 05day    24 adult male 30day    21 adult female 01day    20 adult female 05day  29 adult female 30day  31 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    25 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    16 embryo 08-10hr    14 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    15 embryo 18-20hr    17 embryo 20-22hr    19 embryo 22-24hr    17 larva L1    17 larva L2    17 larva L3 12hr old    12 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    23 white prepupae new    31 white prepupae 12hr    17 white prepupae 24hr    15 pupae 2d postWPP    15 pupae 3d postWPP    13 pupae 4d postWPP    16 adult male 01day    20 adult male 05day    24 adult male 30day    21 adult female 01day    20 adult female 05day    29 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    25 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    16 embryo 08-10hr    14 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    15 embryo 18-20hr    17 embryo 20-22hr    19 embryo 22-24hr    17 larva L1    17 larva L2    17 larva L3 12hr old    12 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    23 white prepupae new    31 white prepupae 12hr    17 white prepupae 24hr    15 pupae 2d postWPP    15 pupae 3d postWPP    13 pupae 4d postWPP    16 adult male 01day    20 adult male 05day    24 adult male 30day    21 adult female 01day    20 adult female 05day    29 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    32 Schneider line 2 Sg4    23 embryonic 1182-4H    33 embryonic GM2    70 embryonic Kc167    117 embryonic S1    15 embryonic S3    35 leg disc CME L1    24 wing disc CME-W2    17 wing disc ML-DmD8    16 wing disc ML-DmD9    23 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    10 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    38 ovary fGS/OSS    19 ovary OSC    19 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (32) Schneider line 2 Sg4    23 embryonic 1182-4H  (33) embryonic GM2  (70) embryonic Kc167  (117) embryonic S1    15 embryonic S3  (35) leg disc CME L1    24 wing disc CME-W2    17 wing disc ML-DmD8    16 wing disc ML-DmD9    23 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    10 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2  (38) ovary fGS/OSS    19 ovary OSC    19 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    32 Schneider line 2 Sg4    23 embryonic 1182-4H    33 embryonic GM2    70 embryonic Kc167  (117) embryonic S1    15 embryonic S3    35 leg disc CME L1    24 wing disc CME-W2    17 wing disc ML-DmD8    16 wing disc ML-DmD9    23 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    10 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    38 ovary fGS/OSS    19 ovary OSC    19 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    32 Schneider line 2 Sg4    23 embryonic 1182-4H    33 embryonic GM2    70 embryonic Kc167    117 embryonic S1    15 embryonic S3    35 leg disc CME L1    24 wing disc CME-W2    17 wing disc ML-DmD8    16 wing disc ML-DmD9    23 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    10 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    38 ovary fGS/OSS    19 ovary OSC    19 ovary OSS    22 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    32 Schneider line 2 Sg4    23 embryonic 1182-4H    33 embryonic GM2    70 embryonic Kc167    117 embryonic S1    15 embryonic S3    35 leg disc CME L1    24 wing disc CME-W2    17 wing disc ML-DmD8    16 wing disc ML-DmD9    23 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    10 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    38 ovary fGS/OSS    19 ovary OSC    19 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  32 Schneider line 2 Sg4    23 embryonic 1182-4H  (33) embryonic GM2  (70) embryonic Kc167  (117) embryonic S1    15 embryonic S3  (35) leg disc CME L1    24 wing disc CME-W2    17 wing disc ML-DmD8    16 wing disc ML-DmD9    23 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    10 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2  (38) ovary fGS/OSS    19 ovary OSC    19 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    32 Schneider line 2 Sg4    23 embryonic 1182-4H    33 embryonic GM2    70 embryonic Kc167  117 embryonic S1    15 embryonic S3    35 leg disc CME L1    24 wing disc CME-W2    17 wing disc ML-DmD8    16 wing disc ML-DmD9    23 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    10 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    38 ovary fGS/OSS    19 ovary OSC    19 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    32 Schneider line 2 Sg4    23 embryonic 1182-4H    33 embryonic GM2    70 embryonic Kc167    117 embryonic S1    15 embryonic S3    35 leg disc CME L1    24 wing disc CME-W2    17 wing disc ML-DmD8    16 wing disc ML-DmD9    23 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    10 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    38 ovary fGS/OSS    19 ovary OSC    19 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    13 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    28 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    19 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    21 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    13 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult  (28) Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    19 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    21 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    13 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    28 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    19 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    21 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    13 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    28 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    19 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    21 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    13 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    28 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    19 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    21 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    13 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult  28 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    19 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    21 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    13 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    28 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    19 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    21 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    13 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    28 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    19 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    21 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_26 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0052675 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG32675-RB
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Tango5GD15932 Phenotype manifest in Allele
Classical Alleles ( 4 )
For All Classical Alleles Show
Allele of Tango5 Class Mutagen Stocks Known lesion Tango5BG02353 P-element activity 1 -- Tango5G0145b P-element activity 1 -- Tango5GG01262 0 -- Tango5GG01797 0 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Tango5 Class Mutagen Stocks Known lesion Tango5GD15932 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes Tango5KK108366 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Tango5T:SV5\V5 in vitro construct - coding region fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD15932} NA P{KK108366} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{GT1}Tango5BG02353 NA insertion of enhancer trap P{lacW}Tango5G0145b No insertion of mobile activating element P{Mae-UAS.6.11}Tango5GG01262 NA P{Mae-UAS.6.11}Tango5GG01797 NA
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
	There is no information supporting a molecular function term for this gene. (Based on a review of available data before: 2006)
Terms Based on Experimental Evidence ( 3 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
Golgi organization inferred from mutant phenotype (Bard et al., 2006) protein secretion inferred from mutant phenotype (Bard et al., 2006)
Cellular Component
CV term Evidence References
endoplasmic reticulum inferred from direct assay (Bard et al., 2006)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
Tango5 - CG10934 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tango5 - HPS1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Tango5 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0052675
Orthologs
OrthoDB Orthologs (38) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6B8K01 Dipteran inclusive ortholog search EOG68PMTV Insect inclusive ortholog search EOG6WSV6M Arthropod inclusive ortholog search EOG6BNZTV Metazoa inclusive ortholog search EOG64R5TJ
Orthologs in Drosophila Species (EOG6B8K01)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Tango5     Drosophila simulans   Dsim\GD24543 Y   Drosophila sechellia   Dsec\GM11289 Y   Drosophila erecta   Dere\GG18903 Y   Drosophila yakuba   Dyak\GE15374 Y   Drosophila ananassae   Dana\GF20825 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA17061 Y   Drosophila persimilis   Dper\GL26903 Y   Drosophila willistoni   Dwil\GK10339 Y   Drosophila virilis   Dvir\GJ14869 Y   Drosophila mojavensis   Dmoj\GI15163 Y   Drosophila grimshawi   Dgri\GH12107 Y
Orthologs in non-Drosophila Dipterans (EOG68PMTV)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL007763   Anopheles gambiae Malaria mosquito  Agam\AGAP010304   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ013967
Orthologs in non-Dipteran Insects (EOG6WSV6M)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB49955 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG000859 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH17514 Y Atta cephalotes Leafcutter ant  Acep\ACEP12941 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO19637 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14575 Y Linepithema humile Argentine ant  Lhum\LH11477 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB18336 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI009134 Y Bombyx mori Silkmoth  Bmor\BGIBMGA012953 Y Pediculus humanus Human body louse  Phum\PHUM317180 Y Tribolium castaneum Red flour beetle  Tcas\GLEAN_14893 Y
Orthologs in non-Insect Arthropods (EOG6BNZTV)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_199069 Y Ixodes scapularis Deer tick  Isca\ISCW007971 Y
Orthologs in non-Arthropod Metazoa (EOG64R5TJ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\epg-3 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_023507gn Y Danio rerio Zebrafish  Drer\vmp1 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000010736 Y Gallus gallus Domestic chicken  Ggal\VMP1 Y Mus musculus House mouse  Mmus\Vmp1 Y Rattus norvegicus Norway rat  Rnor\Vmp1 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000036646 Y Homo sapiens Human  Hsap\VMP1 Y
Human Orthologs (1)
Gene OMIM HGNC Hsap\VMP1
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD24543 Drosophila sechellia Dsec\GM11289 Drosophila erecta Dere\GG18903 Drosophila yakuba Dyak\GE15374 Drosophila ananassae Dana\GF20825 Drosophila pseudoobscura pseudoobscura Dpse\GA17061 Drosophila persimilis Dper\GL26903 Drosophila willistoni Dwil\GK10339 Drosophila virilis Dvir\GJ14869 Drosophila mojavensis Dmoj\GI15163 Drosophila grimshawi Dgri\GH12107
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	12676 w1118 P{GT1}Tango5BG02353 10151 P{lacW}G0145a w67c23 P{lacW}Tango5G0145b P{lacW}G0145c, l(1)G0145G0145/FM7c
VDRC	v100745 P{KK108366}VIE-260B v46667 w1118; P{GD15932}v46667 v46668 w1118; P{GD15932}v46668
Genomic Clones ( 1 )
	CH221-17A11 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 104 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones	FI17817 IP15944
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT19111 AT31114 HL05503 LD14660 LD47434 RE09169 RE09183 RE16888 RE24114 RH63921 RH67727 RH74526 SD04111 SD09971
Other clones	53723 77128 78514 103451 146862 bs69b09 CK01.26C.E7 EC258252 EK025313 EK207529 EK226439 EK243246 EK249627 EP12027 ESG017c.E21_F09 FGA010H12 RE55474 RP003006507 RP003006664 RP003021089 RP003024154 RP003024466 RP003028474 RP003034079 RP003035048 RP003035854 RP003038949 RP003039814 RP003046192 RP003049895 RP003050056 RP003050131 RP003052161 RP003078196 RP003084378 RP003103746 RP003126366 RP003138260 RP003141836 RP003143075 RP003146173 RP003149847 RP003152227 RP003168145 RP003170159 RP003175103 RP003179458 RP003193669 RP003200507 RP003208163 RP003227811 RP003228658 RP003230228 RP003233841 RP003241044 RP003309250 RP003369237 RP003376673 RP003385769 RP003393014 RP003399935 RP003401309 RP003410564 RP003415958 RP003427410 RP003430198 RP003431472 RP003436241 RP003438202 RP003439082 RP003452565 RP003470577 RP003477805 RP003496963 RP003498824 RP003526954 RP003537829 RP003538485 RP003539334 RP003539975 RP003553388 RP003559870 RP003570708 RP003591856 RP003625441 RP003633391 RP003634499 RP003648870
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0052675 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 326232
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Tango5 CG32675 (Bard et al., 2006)
Source for database merge of
Additional comments	Annotation CG1534 split into CG32672 and CG32675 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
Other Comments
	dsRNA directed against this gene has been used in a screen for genes required for constitutive protein secretion. (Bard et al., 2006) dsRNA directed against Tango5 inhibits protein secretion in S2 cells and results in fusion of Golgi membranes with the endoplasmic reticulum in more than 50% of the treated cells. (Bard et al., 2006)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_167242 NM_167243 NM_167244 NM_001169245 NM_001272501 RefSeq (Proteins) • NP_727444 NP_727445 NP_727446 NP_001162716 NP_001259430 DDBJ / EMBL / GenBank • AAF46618 AAF46619 AAN09266 ACZ95251 AGB95273 BH011495 Entrez Gene - A searchable database of RefSeq genes. • 326232 UniProtKB/TrEMBL • Q7KVQ7 Q9W2S1
Other Crossreferences
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0052675 DRSC - Results from RNAi screens. • FBgn0052675 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0052675 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG32675-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0052675 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 326232 modMine - Data generated by the modENCODE project. • FBgn0052675
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	CG1534 (Peter et al., 2002, ) CG32675 (Bard et al., 2006, Keleman et al., 2009.8.5) TANGO5 (Bard et al., 2006) Tango5 (Kim et al., 2010)
Name Synonym	Transport and Golgi organization 5 (Bard et al., 2006)
Secondary FlyBase IDs
	FBgn0030229
References ( 17 )
Research paper	Díaz-Castillo and Ranz, 2012, Mol. Biol. Evol. 29(9): 2105--2108 Nuclear chromosome dynamics in the Drosophila male germ line contribute to the nonrandom genomic distribution of retrogenes. [FBrf0219274] Ambegaokar and Jackson, 2011, Hum. Mol. Genet. 20(24): 4947--4977 Functional genomic screen and network analysis reveal novel modifiers of tauopathy dissociated from tau phosphorylation. [FBrf0217690] Kim et al., 2010, BMC Cell Biol. 11: 9 A genetic screen for modifiers of Drosophila caspase Dcp-1 reveals caspase involvement in autophagy and novel caspase-related genes. [FBrf0209948] Bard et al., 2006, Nature 439(7076): 604--607 Functional genomics reveals genes involved in protein secretion and Golgi organization. [FBrf0191232]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Peter et al., 2002, EMBO Rpts 3(1): Supplementary material. PX-lines.txt. [FBrf0173176] Swanson et al., 2001, Proc. Natl. Acad. Sci. USA 98: Gene characteristics and dN/dS ratios of Drosophila simulans. [FBrf0137427]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886] FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398] FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]