FB2019_05, released Oct 15, 2019

Gene: Dmel\X11Lβ

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General Information
Symbol
Dmel\X11Lβ
Species
D. melanogaster
Name
X11Lβ
Annotation Symbol
CG32677
Feature Type
protein_coding_gene
FlyBase ID
FBgn0052677
Gene Model Status
Current
Stock Availability
8 publicly available
Gene Snapshot
In progress.Contributions welcome.
Other Summaries
Also Known As
X11B
Key Links
Genomic Location
Cytogenetic map
Sequence location
X:10,627,737..10,710,947 [+]
Recombination map
1-32
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Protein Family (UniProt)
-
Protein Signatures (InterPro)
Molecular Function (GO)
[Detailed GO annotations]
Experimental Evidence
-
Predictions / Assertions
-
Summaries
Gene Model and Products
Number of Transcripts
3
Number of Unique Polypeptides
3

Please see the GBrowse view of Dmel\X11Lβ or the JBrowse view of Dmel\X11Lβ for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model
Gene model reviewed during 5.42
Gene model reviewed during 5.43
Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.51
Sequence Ontology: Class of Gene
gene_with_edited_transcript
(Rodriguez et al., 2012)
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
X11Lβ-RA
FBtr0071493
NM_167239
8469
2139
X11Lβ-RD
FBtr0343041
NM_001272496
9687
2066
X11Lβ-RE
FBtr0343042
NM_001298156
8493
2129
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
X11Lβ-PA
FBpp0071422
231.6
2139
6.23
NP_727440
AAF46614
X11Lβ-PD
FBpp0309789
223.3
2066
6.16
NP_001259425
AGB95268
X11Lβ-PE
FBpp0309790
230.5
2129
6.23
NP_001285085
AHN59555
Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\X11Lβ using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Gene Ontology (6 terms)
Molecular Function (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Biological Process (2 terms)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
protein localization to membrane
inferred from mutant phenotype
(Gross et al., 2013)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
chemical synaptic transmission
inferred from biological aspect of ancestor with PANTHER:PTN000960968
(assigned by GO_Central )
(Gaudet et al., 2011)
Cellular Component (4 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (4 terms)
CV Term
Evidence
References
cytoplasm
inferred from biological aspect of ancestor with PANTHER:PTN000960967
(assigned by GO_Central )
(Gaudet et al., 2011)
dendritic spine
inferred from biological aspect of ancestor with PANTHER:PTN000960968
(assigned by GO_Central )
(Gaudet et al., 2011)
plasma membrane
inferred from biological aspect of ancestor with PANTHER:PTN000960967
(assigned by GO_Central )
(Gaudet et al., 2011)
synapse
inferred from biological aspect of ancestor with PANTHER:PTN000960968
(assigned by GO_Central )
(Gaudet et al., 2011)
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage 16 -- 17
ventral nerve cord
(Gross et al., 2013)
embryonic/larval brain
(Gross et al., 2013)
embryo | faint | restricted
(Gross et al., 2013)
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\X11Lβ in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 8 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 6 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of X11Lβ
Transgenic constructs containing regulatory region of X11Lβ
Deletions and Duplications ( 1 )
Partially disrupted in
Df(1)stx2
(Du et al., 2016)
Phenotypes
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v7.1)
Homo sapiens (Human) (3)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\APBA1
10 of 15
Yes
Yes
Hsap\APBA2
9 of 15
Yes
No
 
Hsap\APBA3
8 of 15
Yes
No
Model Organism Orthologs (via DIOPT v7.1)
Mus musculus (laboratory mouse) (3)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Apba1
10 of 15
Yes
Yes
Mmus\Apba2
9 of 15
Yes
No
Mmus\Apba3
6 of 15
No
Yes
Rattus norvegicus (Norway rat) (3)
Rnor\Apba1
9 of 13
Yes
Yes
Rnor\Apba2
9 of 13
Yes
Yes
Rnor\Apba3
6 of 13
No
Yes
Xenopus tropicalis (Western clawed frog) (1)
Xtro\apba2
4 of 12
Yes
Yes
Danio rerio (Zebrafish) (5)
Drer\apba2b
10 of 15
Yes
Yes
Drer\apba1b
8 of 15
No
Yes
Drer\si:ch73-40i7.5
8 of 15
No
Yes
Drer\apba2a
7 of 15
No
Yes
Drer\apba1a
6 of 15
No
Yes
Caenorhabditis elegans (Nematode, roundworm) (1)
Cele\lin-10
11 of 15
Yes
Yes
Arabidopsis thaliana (thale-cress) (0)
No records found.
Saccharomyces cerevisiae (Brewer's yeast) (0)
No records found.
Schizosaccharomyces pombe (Fission yeast) (0)
No records found.
Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG091900UZ )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly
Dmel\X11Lβ
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00005976
Drosophila simulans
Dsim\GD16984
Drosophila sechellia
Dsec\GM11428
Drosophila erecta
Dere\GG18364
Drosophila yakuba
Dyak\GE17852
Drosophila ananassae
Dana\GF21435
Drosophila pseudoobscura pseudoobscura
Dpse\GA22393
Drosophila persimilis
Dper\GL14982
Drosophila willistoni
Dwil\GK20104
Drosophila virilis
Dvir\GJ18807
Drosophila mojavensis
Dmoj\GI14470
Drosophila grimshawi
Dgri\GH12706
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091501ED )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17017994
Musca domestica
House fly
Mdoa\17018970
Glossina morsitans
Tsetse fly
Gmor\GMOY002207
Glossina morsitans
Tsetse fly
Gmor\GMOY006641
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_02710
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_14071
Mayetiola destructor
Hessian fly
Mdes\Mdes003612
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL002883
Anopheles darlingi
American malaria mosquito
Adar\ADAC000335
Anopheles darlingi
American malaria mosquito
Adar\ADAC007663
Anopheles gambiae
Malaria mosquito
Agam\AGAP000452
Anopheles gambiae
Malaria mosquito
Agam\AGAP000449
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ009921
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ016584
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ016585
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W00O0 )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA002732
Bombyx mori
Silkmoth
Bmor\BGIBMGA002731
Danaus plexippus
Monarch butterfly
Dple\DPOGS201547-PA
Heliconius melpomene
Postman butterfly
Hmel\HMEL006982
Apis florea
Little honeybee
Aflo\3746578628
Apis mellifera
Western honey bee
Amel\GB54639
Apis mellifera
Western honey bee
Amel\GB45795
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP20272
Bombus terrestris
Buff-tailed bumblebee
Bter\15214710
Linepithema humile
Argentine ant
Lhum\LH21957
Linepithema humile
Argentine ant
Lhum\LH21958
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:002e82
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG011479
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_09215
Tribolium castaneum
Red flour beetle
Tcas\TC001711
Pediculus humanus
Human body louse
Phum\PHUM593520
Rhodnius prolixus
Kissing bug
Rpro\RPRC008299
Cimex lectularius
Bed bug
Clec\CLEC001106
Cimex lectularius
Bed bug
Clec\CLEC001107
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI004425
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_02972
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X00JP )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR004570
Ixodes scapularis
Black-legged tick
Isca\ISCW015381
Stegodyphus mimosarum
African social velvet spider
Smim\KFM73481.1
Tetranychus urticae
Two-spotted spider mite
Turt\tetur66g00040
Tetranychus urticae
Two-spotted spider mite
Turt\tetur12g03970
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_308950
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_111902
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( None identified )
No non-Arthropod Metazoa orthologies identified
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v7.1)
Drosophila melanogaster (Fruit fly) (2)
Gene Symbol
Score
Source
Compara
eggNOG
Homologene
Inparanoid
Isobase
OrthoDB
OrthoFinder
orthoMCL
Panther
RoundUp
Alignment
X11L
8 of 10
CG31342
1 of 10
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
     
    Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    APBA1; amyloid beta precursor protein binding family A member 1
    10 of 15
    602414
        APBA2; amyloid beta precursor protein binding family A member 2
        9 of 15
        602712
             
            APBA3; amyloid beta precursor protein binding family A member 3
            8 of 15
            604262
                Functional Complementation Data
                Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
                Interactions
                Summary of Physical Interactions
                esyN Network Diagram
                Show neighbor-neighbor interactions:
                Select Layout:
                Legend:
                Protein
                RNA
                Selected Interactor(s)
                Interactions Browser
                View in Interactions Browser
                Please see the Physical Interaction reports below for full details
                protein-protein
                Physical Interaction
                Assay
                References
                X11Lβ - rst
                two hybrid
                (Vishnu et al., 2006)
                Summary of Genetic Interactions
                esyN Network Diagram
                esyN Network Key:
                Suppression
                Enhancement
                View in Interactions Browser
                Please look at the allele data for full details of the genetic interactions
                Starting gene(s)
                Interaction type
                Interacting gene(s)
                Reference
                X11Lβ
                enhanceable
                X11L
                (Gross et al., 2013)
                Starting gene(s)
                Interaction type
                Interacting gene(s)
                Reference
                X11L
                enhanceable
                X11Lβ
                (Gross et al., 2013)
                External Data
                Linkouts
                BioGRID - A database of protein and genetic interactions.
                DroID - A comprehensive database of gene and protein interactions.
                InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
                MIST (protein-protein) - An integrated Molecular Interaction Database
                Pathways
                Gene Group - Pathway Membership (FlyBase)
                External Data
                Linkouts
                Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
                SignaLink - A signaling pathway resource with multi-layered regulatory networks.
                Genomic Location and Detailed Mapping Data
                Chromosome (arm)
                X
                Recombination map
                1-32
                Cytogenetic map
                9D4-9E1
                Sequence location
                X:10,627,737..10,710,947 [+]
                FlyBase Computed Cytological Location
                Cytogenetic map
                Evidence for location
                9D4-9E1
                Experimentally Determined Cytological Location
                Cytogenetic map
                Notes
                References
                Experimentally Determined Recombination Data
                Location
                1-32
                (FlyBase, 2016)
                1-33.6
                (Comeron et al., 2012)
                Left of (cM)
                Right of (cM)
                Notes
                Stocks and Reagents
                Stocks (8)
                Genomic Clones (41)
                cDNA Clones (75)
                 

                Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

                cDNA clones, fully sequences
                BDGP DGC clones
                Other clones
                  Drosophila Genomics Resource Center cDNA clones

                  For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

                  cDNA Clones, End Sequenced (ESTs)
                  BDGP DGC clones
                  Other clones
                  RNAi and Array Information
                  Linkouts
                  DRSC - Results frm RNAi screens
                  GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
                  Antibody Information
                  Laboratory Generated Antibodies
                   
                  Commercially Available Antibodies
                   
                  Other Information
                  Relationship to Other Genes
                  Source for database identify of
                  Source for identity of: X11Lβ CG32677
                  (Gross, 2007.2.25, Vishnu et al., 2006)
                  Source for database merge of
                  Source for merge of: CG1852 CG1861
                  (FlyBase Genome Annotators, 2002-2003)
                  Additional comments
                  Annotations CG1852 and CG1861 merged as CG32677 in release 3 of the genome annotation.
                  (FlyBase Genome Annotators, 2002-2003)
                  Other Comments
                  dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
                  (Kiger et al., 2003)
                  Origin and Etymology
                  Discoverer
                  Etymology
                  Identification
                  External Crossreferences and Linkouts ( 43 )
                  Sequence Crossreferences
                  NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
                  GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
                  GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
                  RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
                  UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
                  Other crossreferences
                  Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
                  Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
                  Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
                  Flygut - An atlas of the Drosophila adult midgut
                  GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
                  iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
                  InterPro - A database of protein families, domains and functional sites
                  KEGG Genes - Molecular building blocks of life in the genomic space.
                  modMine - A data warehouse for the modENCODE project
                  Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
                  SignaLink - A signaling pathway resource with multi-layered regulatory networks.
                  Linkouts
                  BioGRID - A database of protein and genetic interactions.
                  DroID - A comprehensive database of gene and protein interactions.
                  DRSC - Results frm RNAi screens
                  FLIGHT - Cell culture data for RNAi and other high-throughput technologies
                  FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
                  FlyMine - An integrated database for Drosophila genomics
                  InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
                  MIST (protein-protein) - An integrated Molecular Interaction Database
                  Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
                  Synonyms and Secondary IDs (10)
                  Datasets (0)
                  Study focus (0)
                  Experimental Role
                  Project
                  Project Type
                  Title
                  References (39)