FB2019_05, released Oct 15, 2019

Gene: Dmel\Cubn

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General Information
Symbol
Dmel\Cubn
Species
D. melanogaster
Name
Cubilin
Annotation Symbol
CG32702
Feature Type
protein_coding_gene
FlyBase ID
FBgn0052702
Gene Model Status
Current
Stock Availability
4 publicly available
Gene Snapshot
Insufficient genetic data for FlyBase to solicit a summary. [Date last reviewed: 2016-06-30]
Other Summaries
Key Links
Genomic Location
Cytogenetic map
8E7-8E10
Sequence location
X:9,558,665..9,571,308 [-]
Recombination map
1-28
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Protein Family (UniProt)
-
Protein Signatures (InterPro)
Molecular Function (GO)
[Detailed GO annotations]
Experimental Evidence
-
Predictions / Assertions
calcium ion binding
Summaries
Protein Function (UniProtKB)
Required in the nephrocyte for normal uptake of proteins and elimination of toxins, and for maintenance of endocytic trafficking structures. May function together with Amnionless.
(UniProt, Q9W332)
Gene Model and Products
Number of Transcripts
1
Number of Unique Polypeptides
1

Please see the GBrowse view of Dmel\Cubn or the JBrowse view of Dmel\Cubn for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model
Gene model reviewed during 5.52
Sequence Ontology: Class of Gene
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
Cubn-RB
FBtr0273437
NM_167193
11349
3750
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
Cubn-PB
FBpp0271945
418.2
3750
5.32
NP_727348
AAF46505
Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Cubn using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Gene Ontology (3 terms)
Molecular Function (1 term)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
calcium ion binding
inferred from electronic annotation with InterPro:IPR001881, InterPro:IPR018097
(assigned by InterPro )
(FlyBase Curators et al., 2004-)
Biological Process (2 terms)
Terms Based on Experimental Evidence (2 terms)
CV Term
Evidence
References
nephrocyte filtration
inferred from mutant phenotype
(Zhang et al., 2013)
renal protein absorption
inferred from mutant phenotype
(Zhang et al., 2013)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage
embryonic/larval pericardial cell
(Zhang et al., 2013)
larval stage
embryonic/larval pericardial cell
(Zhang et al., 2013)
embryonic/larval garland cell
(Zhang et al., 2013)
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
adult stage
adult head
• membrane
(Aradska et al., 2015)
day 5 of adulthood & male -- day 7 of adulthood & male
spermatozoon
(Wasbrough et al., 2010)
day 7 of adulthood -- day 49 of adulthood
adult heart
(Cammarato et al., 2011)
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\Cubn in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 0 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of Cubn
Transgenic constructs containing regulatory region of Cubn
Deletions and Duplications ( 0 )
Phenotypes
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v7.1)
Homo sapiens (Human) (19)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\CUBN
11 of 15
Yes
Yes
Hsap\ADGRG6
1 of 15
No
No
Hsap\ASTL
1 of 15
No
No
Hsap\BMP1
1 of 15
No
No
 
Hsap\CR1
1 of 15
No
No
Hsap\CSMD1
1 of 15
No
No
Hsap\CSMD2
1 of 15
No
No
Hsap\CSMD3
1 of 15
No
No
Hsap\LRP12
1 of 15
Yes
No
Hsap\MEP1A
1 of 15
No
No
 
Hsap\MEP1B
1 of 15
No
No
Hsap\NETO1
1 of 15
No
No
Hsap\NETO2
1 of 15
No
No
Hsap\SCUBE1
1 of 15
No
No
Hsap\SCUBE2
1 of 15
No
No
Hsap\SVEP1
1 of 15
No
No
Hsap\TLL1
1 of 15
No
No
Hsap\TLL2
1 of 15
No
No
Hsap\TNFAIP6
1 of 15
Yes
No
Model Organism Orthologs (via DIOPT v7.1)
Mus musculus (laboratory mouse) (16)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Cubn
11 of 15
Yes
Yes
Mmus\Adgrg6
1 of 15
No
No
Mmus\Astl
1 of 15
No
No
Mmus\Bmp1
1 of 15
No
No
Mmus\Csmd1
1 of 15
No
No
Mmus\Csmd2
1 of 15
No
Yes
Mmus\Csmd3
1 of 15
No
No
Mmus\Lrp12
1 of 15
Yes
No
Mmus\Mep1a
1 of 15
No
No
Mmus\Mep1b
1 of 15
No
No
Mmus\Neto1
1 of 15
No
No
Mmus\Neto2
1 of 15
No
No
Mmus\Svep1
1 of 15
No
No
Mmus\Tll1
1 of 15
No
No
Mmus\Tll2
1 of 15
No
No
Mmus\Tnfaip6
1 of 15
Yes
No
Rattus norvegicus (Norway rat) (15)
Rnor\Cubn
7 of 13
Yes
Yes
Rnor\Adgrg6
1 of 13
No
No
Rnor\Astl
1 of 13
No
No
Rnor\Bmp1
1 of 13
No
No
Rnor\Csmd1
1 of 13
No
No
Rnor\Csmd3
1 of 13
Yes
No
Rnor\Lrp12
1 of 13
Yes
No
Rnor\Mep1a
1 of 13
No
No
Rnor\Mep1b
1 of 13
No
No
Rnor\Neto1
1 of 13
No
No
Rnor\Neto2
1 of 13
No
No
Rnor\Svep1
1 of 13
No
No
Rnor\Tll1
1 of 13
No
No
Rnor\Tll2
1 of 13
No
No
Rnor\Tnfaip6
1 of 13
Yes
No
Xenopus tropicalis (Western clawed frog) (12)
Xtro\cubn
7 of 12
Yes
Yes
Xtro\accs
1 of 12
No
No
Xtro\bmp1
1 of 12
No
No
Xtro\LOC100489456
1 of 12
No
No
Xtro\LOC100492324
1 of 12
No
No
Xtro\mep1a
1 of 12
No
No
Xtro\mep1b
1 of 12
No
No
Xtro\svep1
1 of 12
No
Yes
Xtro\tll1
1 of 12
No
No
Xtro\tll2
1 of 12
No
No
Xtro\tnfaip6
1 of 12
No
Yes
Xtro\uvs.2
1 of 12
No
No
Danio rerio (Zebrafish) (22)
Drer\cubn
3 of 15
Yes
Yes
Drer\csmd2
2 of 15
No
No
Drer\bmp1a
1 of 15
No
No
Drer\bmp1b
1 of 15
No
No
Drer\c6ast1
1 of 15
No
No
Drer\c6ast3
1 of 15
No
No
Drer\c6ast4
1 of 15
No
No
Drer\he1.1
1 of 15
No
No
Drer\he1.2
1 of 15
No
No
Drer\he1.3
1 of 15
No
No
Drer\LOC797085
1 of 15
No
No
Drer\LOC100003133
1 of 15
No
No
Drer\lrp12
1 of 15
No
Yes
Drer\mep1a.2
1 of 15
No
No
Drer\mep1b
1 of 15
No
No
Drer\neto1
1 of 15
No
No
Drer\neto1l
1 of 15
No
No
Drer\neto2b
1 of 15
No
No
Drer\npsn
1 of 15
No
No
Drer\si:ch73-40a17.3
1 of 15
No
No
Drer\tll1
1 of 15
No
No
Drer\tnfaip6
1 of 15
No
Yes
Caenorhabditis elegans (Nematode, roundworm) (39)
Cele\ZC116.3
11 of 15
Yes
Yes
Cele\dpy-31
1 of 15
No
No
Cele\hch-1
1 of 15
No
No
Cele\nas-1
1 of 15
No
No
Cele\nas-2
1 of 15
No
No
Cele\nas-3
1 of 15
No
No
Cele\nas-4
1 of 15
No
No
Cele\nas-5
1 of 15
No
No
Cele\nas-6
1 of 15
No
No
Cele\nas-7
1 of 15
No
No
Cele\nas-8
1 of 15
No
No
Cele\nas-9
1 of 15
No
No
Cele\nas-10
1 of 15
No
No
Cele\nas-11
1 of 15
No
No
Cele\nas-12
1 of 15
No
No
Cele\nas-13
1 of 15
No
No
Cele\nas-14
1 of 15
No
No
Cele\nas-16
1 of 15
No
No
Cele\nas-17
1 of 15
No
No
Cele\nas-18
1 of 15
No
No
Cele\nas-19
1 of 15
No
No
Cele\nas-20
1 of 15
No
No
Cele\nas-21
1 of 15
No
No
Cele\nas-22
1 of 15
No
No
Cele\nas-23
1 of 15
No
No
Cele\nas-24
1 of 15
No
No
Cele\nas-25
1 of 15
No
No
Cele\nas-27
1 of 15
No
No
Cele\nas-28
1 of 15
No
No
Cele\nas-29
1 of 15
No
No
Cele\nas-30
1 of 15
No
No
Cele\nas-31
1 of 15
No
No
Cele\nas-32
1 of 15
No
No
Cele\nas-33
1 of 15
No
No
Cele\nas-36
1 of 15
No
No
Cele\nas-37
1 of 15
No
No
Cele\nas-38
1 of 15
No
No
Cele\nas-39
1 of 15
No
No
Cele\Y19D10A.6
1 of 15
No
No
Arabidopsis thaliana (thale-cress) (0)
No records found.
Saccharomyces cerevisiae (Brewer's yeast) (0)
No records found.
Schizosaccharomyces pombe (Fission yeast) (0)
No records found.
Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG0919001G )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly
Dmel\Cubn
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00004929
Drosophila simulans
Dsim\GD16058
Drosophila sechellia
Dsec\GM11359
Drosophila erecta
Dere\GG18972
Drosophila yakuba
Dyak\GE15444
Drosophila ananassae
Dana\GF19103
Drosophila pseudoobscura pseudoobscura
Dpse\GA23063
Drosophila persimilis
Dper\GL13113
Drosophila willistoni
Dwil\GK10140
Drosophila virilis
Dvir\GJ19021
Drosophila mojavensis
Dmoj\GI15858
Drosophila grimshawi
Dgri\GH12407
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG09150017 )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17011719
Glossina morsitans
Tsetse fly
Gmor\GMOY004888
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_01491
Mayetiola destructor
Hessian fly
Mdes\Mdes010717
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL010965
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL014312
Anopheles darlingi
American malaria mosquito
Adar\ADAC001841
Anopheles darlingi
American malaria mosquito
Adar\ADAC001900
Anopheles gambiae
Malaria mosquito
Agam\AGAP005526
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ002327
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W02L6 )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA014545
Danaus plexippus
Monarch butterfly
Dple\DPOGS207300-PA
Apis florea
Little honeybee
Aflo\2877368500
Apis mellifera
Western honey bee
Amel\GB53104
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP21316
Bombus terrestris
Buff-tailed bumblebee
Bter\15215887
Linepithema humile
Argentine ant
Lhum\LH15643
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:000163
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG037105
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_09257
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_09258
Tribolium castaneum
Red flour beetle
Tcas\TC032954
Tribolium castaneum
Red flour beetle
Tcas\TC031117
Pediculus humanus
Human body louse
Phum\PHUM104920
Rhodnius prolixus
Kissing bug
Rpro\RPRC008847
Rhodnius prolixus
Kissing bug
Rpro\RPRC015222
Rhodnius prolixus
Kissing bug
Rpro\RPRC013493
Rhodnius prolixus
Kissing bug
Rpro\RPRC002255
Rhodnius prolixus
Kissing bug
Rpro\RPRC002379
Rhodnius prolixus
Kissing bug
Rpro\RPRC003857
Cimex lectularius
Bed bug
Clec\CLEC004081
Cimex lectularius
Bed bug
Clec\CLEC009815
Cimex lectularius
Bed bug
Clec\CLEC003654
Cimex lectularius
Bed bug
Clec\CLEC003655
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI009146
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI25664
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI072217
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI081210
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_12772
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_12776
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X02IF )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR004135
Ixodes scapularis
Black-legged tick
Isca\ISCW020415
Stegodyphus mimosarum
African social velvet spider
Smim\KFM76020.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM76021.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM62124.1
Tetranychus urticae
Two-spotted spider mite
Turt\tetur03g04440
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_221966
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G009U )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-AnL11_1
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_004115gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Astp
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_007393gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Bmp1/TldL2
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-AnL7_1
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Astacin5
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Tll1L_1
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Bmp1/TldL1
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Cubnr_3
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Astacin7
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Astacin8
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Astacin4
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-AspLm
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-An
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Tll1_2
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Cubn2
Ciona intestinalis
Vase tunicate
Cint\LOC100185524
Ciona intestinalis
Vase tunicate
Cint\LOC100175061
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000008374
Ciona intestinalis
Vase tunicate
Cint\tolloid
Ciona intestinalis
Vase tunicate
Cint\LOC100186632
Ciona intestinalis
Vase tunicate
Cint\LOC100175318
Ciona intestinalis
Vase tunicate
Cint\LOC100176208
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000022631
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000019889
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000019778
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000024060
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000017130
Ciona intestinalis
Vase tunicate
Cint\LOC100182127
Ciona intestinalis
Vase tunicate
Cint\LOC100176496
Ciona intestinalis
Vase tunicate
Cint\LOC100181769
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000021949
Ciona intestinalis
Vase tunicate
Cint\LOC100184704
Gallus gallus
Domestic chicken
Ggal\MEP1B
Gallus gallus
Domestic chicken
Ggal\TLL2
Gallus gallus
Domestic chicken
Ggal\CUBN
Gallus gallus
Domestic chicken
Ggal\MEP1A
Gallus gallus
Domestic chicken
Ggal\TLL1
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v7.1)
Drosophila melanogaster (Fruit fly) (18)
Gene Symbol
Score
Source
Compara
eggNOG
Homologene
Inparanoid
Isobase
OrthoDB
OrthoFinder
orthoMCL
Panther
RoundUp
Alignment
CG42255
6 of 10
tld
3 of 10
tok
3 of 10
Neto
2 of 10
CG5715
1 of 10
CG6696
1 of 10
CG6763
1 of 10
CG6974
1 of 10
CG7179
1 of 10
CG7631
1 of 10
CG10280
1 of 10
CG11865
1 of 10
CG15253
1 of 10
CG15254
1 of 10
CG15255
1 of 10
CG34370
1 of 10
CG42613
1 of 10
Semp1
1 of 10
Human Disease Associations
FlyBase Human Disease Model Reports
Disease Model Summary Ribbon
Disease Ontology (DO) Annotations
Models Based on Experimental Evidence ( 1 )
Allele
Disease
Evidence
References
CubnGD6458
model of  kidney disease
CEA
(Zhang et al., 2013)
Potential Models Based on Orthology ( 1 )
Human Ortholog
Disease
Evidence
References
CUBN; cubilin
model of  megaloblastic anemia
IEA
(FlyBase, 2019-)
Modifiers Based on Experimental Evidence ( 0 )
Allele
Disease
Interaction
References
Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
 
Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)
Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
Homo sapiens (Human)
Gene name
Score
OMIM
OMIM Phenotype
DO term
Complementation?
Transgene?
CUBN; cubilin
11 of 15
602997
Functional Complementation Data
Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
Interactions
Summary of Physical Interactions
esyN Network Diagram
Interactions Browser
Summary of Genetic Interactions
esyN Network Diagram
Starting gene(s)
Interaction type
Interacting gene(s)
Reference
Starting gene(s)
Interaction type
Interacting gene(s)
Reference
External Data
Linkouts
DroID - A comprehensive database of gene and protein interactions.
InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
MIST (protein-protein) - An integrated Molecular Interaction Database
Pathways
Gene Group - Pathway Membership (FlyBase)
External Data
Linkouts
Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
Genomic Location and Detailed Mapping Data
Chromosome (arm)
X
Recombination map
1-28
Cytogenetic map
8E7-8E10
Sequence location
X:9,558,665..9,571,308 [-]
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
8E7-8E10
Limits computationally determined from genome sequence between P{EP}EP1450&P{EP}EP1356 and P{EP}EP912EP912
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
1-28
(FlyBase, 2016)
1-30.3
(Comeron et al., 2012)
Left of (cM)
Right of (cM)
Notes
Stocks and Reagents
Stocks (4)
Genomic Clones (22)
cDNA Clones (14)
 

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequences
BDGP DGC clones
Other clones
    Drosophila Genomics Resource Center cDNA clones

    For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

    cDNA Clones, End Sequenced (ESTs)
    BDGP DGC clones
    Other clones
    RNAi and Array Information
    Linkouts
    DRSC - Results frm RNAi screens
    GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
    Antibody Information
    Laboratory Generated Antibodies
     
    Commercially Available Antibodies
     
    Other Information
    Relationship to Other Genes
    Source for database identify of
    Source for identity of: Cubn CG32702
    (Zhang et al., 2013)
    Source for database merge of
    Additional comments
    Annotation CG2996 split in release 3 of the genome annotation. Release 3 annotation CG32699 contains sequences corresponding to release 2 annotation CG15318 and parts of release 2 annotation CG2996. Release 3 annotation CG32702 contains sequences corresponding to parts of release 2 annotation CG2996.
    (FlyBase Genome Annotators, 2002-2003)
    Other Comments
    Origin and Etymology
    Discoverer
    Etymology
    Identification
    External Crossreferences and Linkouts ( 34 )
    Sequence Crossreferences
    NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
    GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
    GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
    RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
    UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
    Other crossreferences
    Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
    Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
    Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
    Flygut - An atlas of the Drosophila adult midgut
    GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
    iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
    InterPro - A database of protein families, domains and functional sites
    KEGG Genes - Molecular building blocks of life in the genomic space.
    modMine - A data warehouse for the modENCODE project
    Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
    Linkouts
    DroID - A comprehensive database of gene and protein interactions.
    DRSC - Results frm RNAi screens
    FLIGHT - Cell culture data for RNAi and other high-throughput technologies
    FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
    FlyMine - An integrated database for Drosophila genomics
    InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
    MIST (protein-protein) - An integrated Molecular Interaction Database
    Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
    Synonyms and Secondary IDs (10)
    Datasets (0)
    Study focus (0)
    Experimental Role
    Project
    Project Type
    Title
    References (33)