FlyBase Gene Report: Dmel\CG32813

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\CG32813 using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Linkouts

Gene Ontology (0 terms)

Molecular Function (0 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Biological Process (0 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Cellular Component (0 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Expression Data

Expression Summary Ribbons

Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.

For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 11 -- 12

anterior midgut primordium

(Fisher et al., 2012)

dorsal pharyngeal muscle primordium

(Fisher et al., 2012)

head visceral muscle primordium

(Fisher et al., 2012)

longitudinal visceral muscle primordium

(Fisher et al., 2012)

posterior midgut primordium

(Fisher et al., 2012)

somatic muscle primordium

Comment: reported as muscle system primordium

(Fisher et al., 2012)

visceral muscle primordium

Comment: reported as muscle system primordium

(Fisher et al., 2012)

embryonic stage 13 -- 16

dorsal pharyngeal muscle

(Fisher et al., 2012)

embryonic/larval midgut

(Fisher et al., 2012)

embryonic/larval muscle system

(Fisher et al., 2012)

embryonic/larval somatic muscle

(Fisher et al., 2012)

embryonic/larval visceral muscle

(Fisher et al., 2012)

esophageal visceral muscle

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\CG32813 in GBrowse 2

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\CG32813

View exonic expression by tissue for Dmel\CG32813

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0052813

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0052813

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG32813-RD

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG32813

Flygut - An atlas of the Drosophila adult midgut

FBgn0052813

Images

FlyExpress - Embryonic expression images (BDGP data)

Show all FlyExpress processed images for Dmel\CG32813

Stages(s) 11-12
Stages(s) 13-16

FlyBase Wiki

Image Based Resources

Alleles, Insertions, and Transgenic Constructs

Classical and Insertion Alleles ( 7 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 3 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of CG32813

Transgenic constructs containing regulatory region of CG32813

Deletions and Duplications ( 1 )

Disrupted in

Df(1)Exel6227

(Ryder, 2004.4.26)

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

viable

CG32813^EY07727

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

viable, with Scer\GAL4^Mef2.PR

viable, with Scer\GAL4^pnr-MD237

CG32813^GD12936

Sterility

Allele

fertile

CG32813^EY07727

Phenotype manifest in

Allele

embryonic/larval hemocyte | third instar larval stage, with Scer\GAL4^Pxn.PS

lamellocyte | third instar larval stage, with Scer\GAL4^Pxn.PS

CG32813^EY07727

Orthologs

Downloads

Download All DIOPT Orthologs

Download All OrthoDB Orthologs

Human Orthologs (via DIOPT v7.1)

Homo sapiens (Human) (3)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Hsap\MSANTD3

1 of 15

Yes

Hsap\MSANTD3-TMEFF1

1 of 15

Yes

Hsap\RAD54B

1 of 15

Yes

Model Organism Orthologs (via DIOPT v7.1)

Mus musculus (laboratory mouse) (1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Mmus\Msantd3

1 of 15

Yes

Rattus norvegicus (Norway rat) (1)

Rnor\Msantd3

1 of 13

Yes

Xenopus tropicalis (Western clawed frog) (1)

Xtro\msantd3

1 of 12

Yes

Danio rerio (Zebrafish) (0)

No records found.

Caenorhabditis elegans (Nematode, roundworm) (0)

No records found.

Arabidopsis thaliana (thale-cress) (0)

No records found.

Saccharomyces cerevisiae (Brewer's yeast) (0)

No records found.

Schizosaccharomyces pombe (Fission yeast) (0)

No records found.

Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG091908BV )

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA22717

Drosophila persimilis

Dper\GL14248

Drosophila willistoni

Dwil\GK16307

Drosophila virilis

Dvir\GJ19219

Drosophila mojavensis

Dmoj\GI15693

Drosophila grimshawi

Dgri\GH24878

Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091504TA )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Musca domestica

House fly

Mdoa\17021954

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_08358

Mayetiola destructor

Hessian fly

Mdes\Mdes015624

Mayetiola destructor

Hessian fly

Mdes\Mdes018746

Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W04NY )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Cimex lectularius

Bed bug

Clec\CLEC004536

Cimex lectularius

Bed bug

Clec\CLEC004342

Cimex lectularius

Bed bug

Clec\CLEC000373

Cimex lectularius

Bed bug

Clec\CLEC003544

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI36411

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI38013

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI55792

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI27317

Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( None identified )

No non-Insect Arthropod orthologies identified

Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( None identified )

No non-Arthropod Metazoa orthologies identified

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v7.1)

Drosophila melanogaster (Fruit fly) (2)

Gene Symbol

Score

Source

Alignment

apt

1 of 10

CG3548

1 of 10

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Model Summary Ribbon

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Interactions Browser

Summary of Genetic Interactions

esyN Network Diagram

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0052813

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

External Data

Linkouts

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

1-0.2

Cytogenetic map

2A1-2A1

Sequence location

X:1,380,914..1,392,843 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

2A1-2A1

Limits computationally determined from genome sequence between P{EP}EP1542 and P{EP}futsch^EP1419

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

1-0.2

(FlyBase, 2016)

1-0.1

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (8)

Bloomington

21105

y¹ P{EPgy2}CG3719^EY14694 w^67c23

16858

y¹ P{EPgy2}CG32813^EY07727 w^67c23

Kyoto

126326

P{RS5}CG32813^5-SZ-4075 w¹¹¹⁸

105084

y^* P{GawB}CG32813^NP6032 w^* / FM7c

105415

y^* w^* P{GawB}CG32813^NP7289 / FM7c

VDRC

v101839

P{KK109903}VIE-260B

v45498

w¹¹¹⁸; P{GD8437}v45498

v26839

w¹¹¹⁸; P{GD12936}v26839

Genomic Clones (10)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (35)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequences

BDGP DGC clones

Other clones

DPiM_LD31228

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0052813

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0052813

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

31089

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Other Information

Relationship to Other Genes

Source for database identify of

Source for database merge of

Source for merge of: CG32813 anon-WO0153538.75

(FlyBase, 1996-)

Source for merge of: CG11446 CG14771

(FlyBase Genome Annotators, 2002-2003)

Additional comments

Annotations CG11446 and CG14771 merged as CG32813 in release 3 of the genome annotation.

(FlyBase Genome Annotators, 2002-2003)

Source for merge of CG32813 anon-WO0153538.75 was sequence comparison ( date:051113 ).

(FlyBase, 1996-)

Other Comments

Origin and Etymology

Discoverer

Etymology

Identification

External Crossreferences and Linkouts ( 57 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

31089

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0052813

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0052813

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG32813

Flygut - An atlas of the Drosophila adult midgut

FBgn0052813

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

31089

InterPro - A database of protein families, domains and functional sites

Myb/SANT-like DNA-binding domain

KEGG Genes - Molecular building blocks of life in the genomic space.

Dmel_CG32813

modMine - A data warehouse for the modENCODE project

FBgn0052813

Linkouts

DPiM - Drosophila Protein interaction map

FBgn0052813

DroID - A comprehensive database of gene and protein interactions.

FBgn0052813

DRSC - Results frm RNAi screens

FBgn0052813

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0052813

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG32813-RD

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0052813

FlyMine - An integrated database for Drosophila genomics

FBgn0052813

Synonyms and Secondary IDs (4)

Reported As

Symbol Synonym

CG11446

(Weber et al., 2012)

CG14771

(Benos, 2000.12.13)

CG32813

(Izutsu et al., 2015, Ashwal-Fluss et al., 2014, Esslinger et al., 2013, Jungreis, 2011.11.18, Bland et al., 2010, Hurlbut et al., 2009, Keleman et al., 2009.8.5, Stofanko et al., 2008, Akdemir et al., 2007)

anon-WO0153538.75

Name Synonyms

Secondary FlyBase IDs

FBgn0029576
FBgn0040894
FBgn0045875

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

References (30)

Report Sections

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