FB2020_06, released Dec 22, 2020

Gene: Dmel\CG32813

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General Information
Symbol
Dmel\CG32813
Species
D. melanogaster
Name
Annotation Symbol
CG32813
Feature Type
protein_coding_gene
FlyBase ID
FBgn0052813
Gene Model Status
Current
Stock Availability
8 publicly available
Gene Snapshot
Contributions welcome
Other Summaries
Key Links
Genomic Location
Cytogenetic map
2A1-2A1
Sequence location
X:1,380,914..1,392,843 [+]
Recombination map

1-0.2

RefSeq locus
NC_004354 REGION:1380914..1392843
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Gene Ontology (GO) Annotations (0 terms)
Molecular Function (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Biological Process (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
Summaries
Gene Model and Products
Number of Transcripts
10
Number of Unique Polypeptides
3

Please see the JBrowse view of Dmel\CG32813 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model

Gene model reviewed during 5.44

Low-frequency RNA-Seq exon junction(s) not annotated.

Annotated transcripts do not represent all supported alternative splices within 5' UTR.

Gene model reviewed during 5.51

gene_with_stop_codon_read_through ; SO:0000697

Stop-codon suppression (UAG) postulated; FBrf0243886.

Gene model reviewed during 6.32

Sequence Ontology: Class of Gene
gene_with_stop_codon_read_through
(FlyBase Genome Annotators, 2020, FlyBase Genome Annotators, 2019-)
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
CG32813-RB
FBtr0070222
NM_166884
3438
572
CG32813-RD
FBtr0070219
NM_166885
3697
572
CG32813-RH
FBtr0330317
NM_130553
3511
581
CG32813-RI
FBtr0330318
NM_166881
3726
572
CG32813-RJ
FBtr0330319
NM_166882
3254
572
CG32813-RK
FBtr0330320
NM_166883
4058
572
CG32813-RL
FBtr0342735
NM_001297847
3484
572
CG32813-RM
FBtr0342736
NM_001297848
3220
572
CG32813-RN
FBtr0342737
NM_001297849
3585
572
CG32813-RO
FBtr0479843
NM_001382062
3484
699
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
CG32813-PB
FBpp0070213
59.2
572
6.73
NP_726736
AAF45617
CG32813-PD
FBpp0070210
59.2
572
6.73
NP_726737
AAN09047
CG32813-PH
FBpp0303349
60.3
581
6.79
NP_569909
AAF45618
CG32813-PI
FBpp0303350
59.2
572
6.73
NP_726733
AAN09044
CG32813-PJ
FBpp0303351
59.2
572
6.73
NP_726734
AAN09045
CG32813-PK
FBpp0303352
59.2
572
6.73
NP_726735
AAN09046
CG32813-PL
FBpp0309603
59.2
572
6.73
NP_001284776
AHN59247
CG32813-PM
FBpp0309604
59.2
572
6.73
NP_001284777
AHN59248
CG32813-PN
FBpp0309605
59.2
572
6.73
NP_001284778
AHN59249
CG32813-PO
FBpp0428179
72.8
699
4.81
QJC18354
Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

572 aa isoforms: CG32813-PB, CG32813-PD, CG32813-PI, CG32813-PJ, CG32813-PK, CG32813-PL, CG32813-PM, CG32813-PN
Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\CG32813 using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
Polypeptide Expression
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\CG32813 in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyExpress - Embryonic expression images (BDGP data)
  • Stages(s) 11-12
  • Stages(s) 13-16
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 7 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of CG32813
Transgenic constructs containing regulatory region of CG32813
Deletions and Duplications ( 1 )
Phenotypes
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v8.0)
Homo sapiens (Human) (2)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\MSANTD3
2 of 15
Yes
Yes
Hsap\RAD54B
1 of 15
No
No
Model Organism Orthologs (via DIOPT v8.0)
Mus musculus (laboratory mouse) (1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Msantd3
1 of 15
Yes
Yes
Rattus norvegicus (Norway rat) (1)
Rnor\Msantd3
1 of 13
Yes
Yes
Xenopus tropicalis (Western clawed frog) (1)
Xtro\msantd3
2 of 12
Yes
Yes
Danio rerio (Zebrafish) (0)
No records found.
Caenorhabditis elegans (Nematode, roundworm) (0)
No records found.
Arabidopsis thaliana (thale-cress) (0)
No records found.
Saccharomyces cerevisiae (Brewer's yeast) (0)
No records found.
Schizosaccharomyces pombe (Fission yeast) (0)
No records found.
Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( EOG091908BV )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila simulans
Dsim\GD24714
Drosophila sechellia
Dsec\GM19133
Drosophila erecta
Dere\GG12851
Drosophila yakuba
Dyak\GE16685
Drosophila ananassae
Dana\GF21014
Drosophila pseudoobscura pseudoobscura
Dpse\GA22717
Drosophila persimilis
Dper\GL14248
Drosophila willistoni
Dwil\GK16307
Drosophila virilis
Dvir\GJ19219
Drosophila mojavensis
Dmoj\GI15693
Drosophila grimshawi
Dgri\GH24878
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091504TA )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17021954
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_08358
Mayetiola destructor
Hessian fly
Mdes\Mdes015624
Mayetiola destructor
Hessian fly
Mdes\Mdes018746
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W04NY )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Cimex lectularius
Bed bug
Clec\CLEC004536
Cimex lectularius
Bed bug
Clec\CLEC004342
Cimex lectularius
Bed bug
Clec\CLEC000373
Cimex lectularius
Bed bug
Clec\CLEC003544
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI36411
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI38013
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI55792
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI27317
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( None identified )
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( None identified )
No non-Arthropod Metazoa orthologies identified
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v8.0)
Drosophila melanogaster (Fruit fly) (2)
Gene Symbol
Score
Source
Compara
eggNOG
Homologene
Inparanoid
Isobase
OrthoDB
OrthoFinder
orthoMCL
Panther
RoundUp
Alignment
apt
2 of 10
CG3548
2 of 10
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    Functional Complementation Data
    Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
    Interactions
    Summary of Physical Interactions
    esyN Network Diagram
    Interactions Browser
    Summary of Genetic Interactions
    esyN Network Diagram
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    External Data
    Linkouts
    DroID - A comprehensive database of gene and protein interactions.
    Pathways
    Signaling Pathways (FlyBase)
    Metabolic Pathways
    External Data
    Linkouts
    Genomic Location and Detailed Mapping Data
    Chromosome (arm)
    X
    Recombination map

    1-0.2

    Cytogenetic map
    2A1-2A1
    Sequence location
    X:1,380,914..1,392,843 [+]
    FlyBase Computed Cytological Location
    Cytogenetic map
    Evidence for location
    2A1-2A1
    Limits computationally determined from genome sequence between P{EP}EP1542 and P{EP}futschEP1419
    Experimentally Determined Cytological Location
    Cytogenetic map
    Notes
    References
    Experimentally Determined Recombination Data
    Location

    1-0.2

    (FlyBase, 2016)

    1-0.1

    (Comeron et al., 2012)
    Left of (cM)
    Right of (cM)
    Notes
    Stocks and Reagents
    Stocks (8)
    Genomic Clones (10)
     

    Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

    cDNA Clones (35)
     

    Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

    cDNA clones, fully sequenced
    BDGP DGC clones
    Other clones
    Drosophila Genomics Resource Center cDNA clones

    For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

    cDNA Clones, End Sequenced (ESTs)
    BDGP DGC clones
    Other clones
    RNAi and Array Information
    Linkouts
    DRSC - Results frm RNAi screens
    GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
    Antibody Information
    Laboratory Generated Antibodies
     
    Commercially Available Antibodies
     
    Other Information
    Relationship to Other Genes
    Source for database identify of
    Source for database merge of

    Source for merge of: CG32813 anon-WO0153538.75

    (FlyBase, 1996-)

    Source for merge of: CG11446 CG14771

    (FlyBase Genome Annotators, 2002-2003)
    Additional comments

    Annotations CG11446 and CG14771 merged as CG32813 in release 3 of the genome annotation.

    (FlyBase Genome Annotators, 2002-2003)

    Source for merge of CG32813 anon-WO0153538.75 was sequence comparison ( date:051113 ).

    (FlyBase, 1996-)
    Other Comments
    Origin and Etymology
    Discoverer
    Etymology
    Identification
    External Crossreferences and Linkouts ( 60 )
    Sequence Crossreferences
    NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
    GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
    GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
    RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
    UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
    Other crossreferences
    BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
    Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
    Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
    Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
    Flygut - An atlas of the Drosophila adult midgut
    GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
    InterPro - A database of protein families, domains and functional sites
    KEGG Genes - Molecular building blocks of life in the genomic space.
    modMine - A data warehouse for the modENCODE project
    Linkouts
    DPiM - Drosophila Protein interaction map
    DroID - A comprehensive database of gene and protein interactions.
    DRSC - Results frm RNAi screens
    FLIGHT - Cell culture data for RNAi and other high-throughput technologies
    FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
    FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
    FlyMine - An integrated database for Drosophila genomics
    Synonyms and Secondary IDs (4)
    Datasets (0)
    Study focus (0)
    Experimental Role
    Project
    Project Type
    Title
    References (32)