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Gene Dmel\CG32939

General Information
Symbol	Dmel\CG32939	Species	D. melanogaster
Name		Annotation symbol	CG32939
Feature type	protein_coding_gene	FlyBase ID	FBgn0052939
Gene Model Status	Current	Stock availability	None publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	85E4-85E4	Sequence location	3R:5,518,801..5,520,183 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG32939 (FBgn0052939). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: No FlyAtlas data available because no Affy2 ProbeSet aligns to an exon of CG32939. Comments on Affy2 ProbeSet: No relevant information because no Affy2 ProbeSet aligns to an exon of CG32939. Gene sequence location is 3R:5518801..5520183.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 85E4-85E4   Limits computationally determined from genome sequence between P{EP}CrcEP3006 and P{lacW}s2681
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG32939 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG32939-RA FBtr0082085  NM_176441   1264   249
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG32939-PA   FBpp0081563   29.2   249   8.03     NP_788618   AAO41529
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA141401   AE014297 AAO41529   AY061243   BI238463   BI242110   BI483700   BI485110   BI579292   BT058067   CO154378   CO188769   CO337894   CO340679   EC229693   EC235883   EC260357   EC266463   EC267062   EY198611   FD586240   FD586409   FD586856   FD587021   GH779383   GH779464   GH779622
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9I7K4
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0052939    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0052939 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0052939 expression level Developmental Stage   Expression Level embryo 00-02hr    328 embryo 02-04hr    331 embryo 04-06hr    249 embryo 06-08hr    162 embryo 08-10hr    138 embryo 10-12hr    110 embryo 12-14hr    149 embryo 14-16hr    86 embryo 16-18hr    121 embryo 18-20hr    62 embryo 20-22hr    95 embryo 22-24hr    129 larva L1    85 larva L2    120 larva L3 12hr old    87 larva L3 puffstage 1-2    86 larva L3 puffstage 3-6    101 larva L3 puffstage 7-9    130 white prepupae new    89 white prepupae 12hr    90 white prepupae 24hr    136 pupae 2d postWPP    126 pupae 3d postWPP    108 pupae 4d postWPP    45 adult male 01day    119 adult male 05day    127 adult male 30day    83 adult female 01day    95 adult female 05day    248 adult female 30day    229 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (328) embryo 02-04hr  (331) embryo 04-06hr  (249) embryo 06-08hr  (162) embryo 08-10hr  (138) embryo 10-12hr  (110) embryo 12-14hr  (149) embryo 14-16hr    86 embryo 16-18hr  (121) embryo 18-20hr    62 embryo 20-22hr    95 embryo 22-24hr  (129) larva L1    85 larva L2  (120) larva L3 12hr old    87 larva L3 puffstage 1-2    86 larva L3 puffstage 3-6  101 larva L3 puffstage 7-9  (130) white prepupae new    89 white prepupae 12hr    90 white prepupae 24hr  (136) pupae 2d postWPP  (126) pupae 3d postWPP  (108) pupae 4d postWPP    45 adult male 01day  (119) adult male 05day  (127) adult male 30day    83 adult female 01day    95 adult female 05day  (248) adult female 30day  (229) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    328 embryo 02-04hr    331 embryo 04-06hr    249 embryo 06-08hr    162 embryo 08-10hr    138 embryo 10-12hr    110 embryo 12-14hr    149 embryo 14-16hr    86 embryo 16-18hr    121 embryo 18-20hr    62 embryo 20-22hr    95 embryo 22-24hr    129 larva L1    85 larva L2    120 larva L3 12hr old    87 larva L3 puffstage 1-2    86 larva L3 puffstage 3-6    101 larva L3 puffstage 7-9    130 white prepupae new    89 white prepupae 12hr    90 white prepupae 24hr    136 pupae 2d postWPP    126 pupae 3d postWPP    108 pupae 4d postWPP    45 adult male 01day    119 adult male 05day    127 adult male 30day    83 adult female 01day    95 adult female 05day    248 adult female 30day    229 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    328 embryo 02-04hr    331 embryo 04-06hr    249 embryo 06-08hr    162 embryo 08-10hr    138 embryo 10-12hr    110 embryo 12-14hr    149 embryo 14-16hr    86 embryo 16-18hr    121 embryo 18-20hr    62 embryo 20-22hr    95 embryo 22-24hr    129 larva L1    85 larva L2    120 larva L3 12hr old    87 larva L3 puffstage 1-2    86 larva L3 puffstage 3-6    101 larva L3 puffstage 7-9    130 white prepupae new    89 white prepupae 12hr    90 white prepupae 24hr    136 pupae 2d postWPP    126 pupae 3d postWPP    108 pupae 4d postWPP    45 adult male 01day    119 adult male 05day    127 adult male 30day    83 adult female 01day    95 adult female 05day    248 adult female 30day    229 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    328 embryo 02-04hr    331 embryo 04-06hr    249 embryo 06-08hr    162 embryo 08-10hr    138 embryo 10-12hr    110 embryo 12-14hr    149 embryo 14-16hr    86 embryo 16-18hr    121 embryo 18-20hr    62 embryo 20-22hr    95 embryo 22-24hr    129 larva L1    85 larva L2    120 larva L3 12hr old    87 larva L3 puffstage 1-2    86 larva L3 puffstage 3-6    101 larva L3 puffstage 7-9    130 white prepupae new    89 white prepupae 12hr    90 white prepupae 24hr    136 pupae 2d postWPP    126 pupae 3d postWPP    108 pupae 4d postWPP    45 adult male 01day    119 adult male 05day    127 adult male 30day    83 adult female 01day    95 adult female 05day    248 adult female 30day    229 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0052939 expression level Developmental Stage   Expression Level embryo 00-02hr    328 embryo 02-04hr    331 embryo 04-06hr    249 embryo 06-08hr    162 embryo 08-10hr    138 embryo 10-12hr    110 embryo 12-14hr    149 embryo 14-16hr    86 embryo 16-18hr    121 embryo 18-20hr    62 embryo 20-22hr    95 embryo 22-24hr    129 larva L1    85 larva L2    120 larva L3 12hr old    87 larva L3 puffstage 1-2    86 larva L3 puffstage 3-6    101 larva L3 puffstage 7-9    130 white prepupae new    89 white prepupae 12hr    90 white prepupae 24hr    136 pupae 2d postWPP    126 pupae 3d postWPP    108 pupae 4d postWPP    45 adult male 01day    119 adult male 05day    127 adult male 30day    83 adult female 01day    95 adult female 05day    248 adult female 30day    229 Expression Level Scale  None   Extremely low   Very low   Low   Moderate  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (328) embryo 02-04hr  (331) embryo 04-06hr  (249) embryo 06-08hr  (162) embryo 08-10hr  138 embryo 10-12hr  110 embryo 12-14hr  (149) embryo 14-16hr    86 embryo 16-18hr  121 embryo 18-20hr    62 embryo 20-22hr    95 embryo 22-24hr  129 larva L1    85 larva L2  120 larva L3 12hr old    87 larva L3 puffstage 1-2    86 larva L3 puffstage 3-6  101 larva L3 puffstage 7-9  130 white prepupae new    89 white prepupae 12hr    90 white prepupae 24hr  136 pupae 2d postWPP  126 pupae 3d postWPP  108 pupae 4d postWPP    45 adult male 01day  119 adult male 05day  127 adult male 30day    83 adult female 01day    95 adult female 05day  (248) adult female 30day  (229) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    328 embryo 02-04hr    331 embryo 04-06hr    249 embryo 06-08hr    162 embryo 08-10hr    138 embryo 10-12hr    110 embryo 12-14hr    149 embryo 14-16hr    86 embryo 16-18hr    121 embryo 18-20hr    62 embryo 20-22hr    95 embryo 22-24hr    129 larva L1    85 larva L2    120 larva L3 12hr old    87 larva L3 puffstage 1-2    86 larva L3 puffstage 3-6    101 larva L3 puffstage 7-9    130 white prepupae new    89 white prepupae 12hr    90 white prepupae 24hr    136 pupae 2d postWPP    126 pupae 3d postWPP    108 pupae 4d postWPP    45 adult male 01day    119 adult male 05day    127 adult male 30day    83 adult female 01day    95 adult female 05day    248 adult female 30day    229 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    328 embryo 02-04hr    331 embryo 04-06hr    249 embryo 06-08hr    162 embryo 08-10hr    138 embryo 10-12hr    110 embryo 12-14hr    149 embryo 14-16hr    86 embryo 16-18hr    121 embryo 18-20hr    62 embryo 20-22hr    95 embryo 22-24hr    129 larva L1    85 larva L2    120 larva L3 12hr old    87 larva L3 puffstage 1-2    86 larva L3 puffstage 3-6    101 larva L3 puffstage 7-9    130 white prepupae new    89 white prepupae 12hr    90 white prepupae 24hr    136 pupae 2d postWPP    126 pupae 3d postWPP    108 pupae 4d postWPP    45 adult male 01day    119 adult male 05day    127 adult male 30day    83 adult female 01day    95 adult female 05day    248 adult female 30day    229 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    328 embryo 02-04hr    331 embryo 04-06hr    249 embryo 06-08hr    162 embryo 08-10hr    138 embryo 10-12hr    110 embryo 12-14hr    149 embryo 14-16hr    86 embryo 16-18hr    121 embryo 18-20hr    62 embryo 20-22hr    95 embryo 22-24hr    129 larva L1    85 larva L2    120 larva L3 12hr old    87 larva L3 puffstage 1-2    86 larva L3 puffstage 3-6    101 larva L3 puffstage 7-9    130 white prepupae new    89 white prepupae 12hr    90 white prepupae 24hr    136 pupae 2d postWPP    126 pupae 3d postWPP    108 pupae 4d postWPP    45 adult male 01day    119 adult male 05day    127 adult male 30day    83 adult female 01day    95 adult female 05day    248 adult female 30day    229 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_13
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0052939 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG32939-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG32939 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG32939 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
	There is no information supporting a biological process, cellular component or molecular function term for this gene. (Based on a review of available data before: 2006)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG32939 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 76855 DroID - A comprehensive database of gene and protein interactions. • FBgn0052939 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 318260
Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs	Dpse\GA17205
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL013244-PB Aedes aegypti (mosquito) AGAP002285-PA Anopheles gambiae (mosquito) XP_001122051.1 Apis mellifera (honey bee) CPIJ012476 Culex pipens (mosquito) XP_001607574.1 Nasonia vitripennis (wasp) PHUM005599-PA Pediculus humanus (human body louse) XP_975375.1 Tribolium castaneum (red flour beetle) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV10303 LH16861 FBgn0243021 FBgn0214198 FBgn0201658 FBgn0190160 FBgn0178693 FBgn0077219 FBgn0164748 FBgn0133604 FBgn0037731 FBgn0126448 FBgn0109265 FBgn0088710 CPIJ012476 GB19089 AGAP002285 AAEL013244 PB23623 PHUM504080
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 1 )
	BACR30F01 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 20 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD18367
Other clones	MIP03904
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RE34940 RE39344 RE66623 RE68387 RE73296
Other clones	523638 CK01951 EK041830 EN04020 EN15528 EP11123 RM01363 RM01463 RM01563 RM01663 RP001025276 RP001035094 RP001045915
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0052939 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 318260
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	New annotation (CG32939) in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_176441 RefSeq (Proteins) • NP_788618 DDBJ / EMBL / GenBank • AAO41529 Entrez Gene - A searchable database of RefSeq genes. • 318260 UniProtKB/TrEMBL • Q9I7K4
Other Crossreferences
Linkouts
	BioGRID - A database of protein and genetic interactions • 76855 DroID - A comprehensive database of gene and protein interactions. • FBgn0052939 DRSC - Results from RNAi screens. • FBgn0052939 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0052939 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG32939-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0052939 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 318260 InParanoid A subset of ortholog calls from InParanoid. • AAEL013244-PB Aedes aegypti (mosquito) AGAP002285-PA Anopheles gambiae (mosquito) XP_001122051.1 Apis mellifera (honey bee) CPIJ012476 Culex pipens (mosquito) XP_001607574.1 Nasonia vitripennis (wasp) PHUM005599-PA Pediculus humanus (human body louse) XP_975375.1 Tribolium castaneum (red flour beetle) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 318260 modMine - Data generated by the modENCODE project. • FBgn0052939 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV10303 LH16861 FBgn0243021 FBgn0214198 FBgn0201658 FBgn0190160 FBgn0178693 FBgn0077219 FBgn0164748 FBgn0133604 FBgn0037731 FBgn0126448 FBgn0109265 FBgn0088710 CPIJ012476 GB19089 AGAP002285 AAEL013244 PB23623 PHUM504080
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG32939
Name Synonym
Secondary FlyBase IDs
References ( 4 )
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979]
FlyBase analysis	FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886] FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398]