A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\4EHP

General Information
SymbolDmel\4EHPSpeciesD. melanogaster
NameeIF4E-Homologous ProteinAnnotation symbolCG33100
Feature typeprotein_coding_geneFlyBase IDFBgn0053100
Gene Model StatusCurrent Stock availability 26 publicly available
Also Known Asd4EHP, eIF4E-8, 4E-HP
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map95E1-95E1Sequence location3R:19,888,799..19,934,682 [-]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene eIF4E-Homologous Protein is referred to in FlyBase by the symbol Dmel\4EHP (CG33100, FBgn0053100). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding; translation repressor activity; RNA 7-methylguanosine cap binding. There is experimental evidence that it is involved in the biological process: inter-male aggressive behavior; imaginal disc-derived wing morphogenesis; negative regulation of translation; neurogenesis. 33 alleles are reported. The phenotypes of these alleles are annotated with: trichogen cell; mesothoracic tergum. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: Translation Initiation factor eIF- 4e; Translation Initiation factor eIF- 4e-like domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: larval trachea, adult ovary, adult testis. Gene sequence location is 3R:19888799..19934682.

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Description
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FB2013_03
FB2013_02
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
95E1-95E1  
Limits computationally determined from genome sequence between P{PZ}Atg600096 and P{PZ}Syx1A06737&P{PZ}Syx1A10660  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
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Please see the GBrowse view of Dmel\4EHP for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0084541 FBtr0084588 FBtr0303161 FBtr0084542 FBtr0300475 FBtr0303159 FBtr0084587 FBtr0303160 FBtr0084543 FBtr0305314 FBtr0339243 FBtr0300705 FBpp0083926 FBpp0292260 FBpp0083973 FBpp0083927 FBpp0289702 FBpp0292258 FBpp0083972 FBpp0292259 FBpp0083928 FBpp0293857 FBpp0308350 FBpp0289929 FBti0046905 FBti0043933 FBti0126246_1 FBti0126246_2 FBti0143285 FBti0067146 FBti0048841 FBti0045620 FBti0069613 FBti0054966 FBti0056247 FBti0050863 FBti0045964 FBti0043256 FBti0066037 FBti0049719 FBti0066036 FBti0102363 FBti0106395 FBti0059506 FBti0036547 FBti0011389 FBti0002923 FBti0072572 FBti0104639 FBti0106275 FBti0111603 FBti0006117 FBti0109298 FBti0100778 FBti0104053 FBti0039755 FBti0104222 FBti0033822 FBti0050981 FBti0041678 FBti0099954 FBti0017635
Comments on Gene Model
Gene model reviewed during 5.49
Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Low-frequency RNA-Seq exon junction(s) not annotated.
Shares 3' UTR sequences with downstream gene.
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0084587
  1855
  223
FBtr0300475
  2401
  248
FBtr0303159
  4539
  186
FBtr0303160
  1324
  242
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
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Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0083972  
25.8  
223  
7.88  
FBpp0289702  
28.7  
248  
8.72  
FBpp0292258  
21.6  
186  
7.03  
FBpp0292259  
28.3  
242  
9.09  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
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DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
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Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:maternally deposited
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
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hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: larval trachea, adult ovary, adult testis.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 21
central nervous system, larvae L3
 
 47
central nervous system, pupae P8
 
 169
head, virgin 1-day female
 
 100
head, virgin 4-day female
 
 87
head, virgin 20-day female
 
 17
head, mated 1-day female
 
 109
head, mated 4-day female
 
 68
head, mated 20-day female
 
 22
head, mated 1-day male
 
 131
head, mated 4-day male
 
 124
head, mated 20-day male
 
 67
salivary gland, larvae L3 wandering
 
 3
salivary gland, white prepupae
 
 11
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 9
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 9
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 11
fat body, pupae P8
 
 37
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 17
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 13
ovary, virgin 4-day female
 
 74
ovary, mated 4-day female
 
 85
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 21
central nervous system, larvae L3
 (47)
central nervous system, pupae P8
 (169)
head, virgin 1-day female
 (100)
head, virgin 4-day female
 (87)
head, virgin 20-day female
 
 17
head, mated 1-day female
 (109)
head, mated 4-day female
 (68)
head, mated 20-day female
 
 22
head, mated 1-day male
 (131)
head, mated 4-day male
 (124)
head, mated 20-day male
 (67)
salivary gland, larvae L3 wandering
 
 3
salivary gland, white prepupae
 
 11
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 9
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 9
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 11
fat body, pupae P8
 (37)
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 17
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 13
ovary, virgin 4-day female
 (74)
ovary, mated 4-day female
 (85)
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 21
central nervous system, larvae L3
 
 47
central nervous system, pupae P8
 (169)
head, virgin 1-day female
 
 100
head, virgin 4-day female
 
 87
head, virgin 20-day female
 
 17
head, mated 1-day female
 (109)
head, mated 4-day female
 
 68
head, mated 20-day female
 
 22
head, mated 1-day male
 (131)
head, mated 4-day male
 (124)
head, mated 20-day male
 
 67
salivary gland, larvae L3 wandering
 
 3
salivary gland, white prepupae
 
 11
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 9
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 9
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 11
fat body, pupae P8
 
 37
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 17
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 13
ovary, virgin 4-day female
 
 74
ovary, mated 4-day female
 
 85
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 21
central nervous system, larvae L3
 
 47
central nervous system, pupae P8
 
 169
head, virgin 1-day female
 
 100
head, virgin 4-day female
 
 87
head, virgin 20-day female
 
 17
head, mated 1-day female
 
 109
head, mated 4-day female
 
 68
head, mated 20-day female
 
 22
head, mated 1-day male
 
 131
head, mated 4-day male
 
 124
head, mated 20-day male
 
 67
salivary gland, larvae L3 wandering
 
 3
salivary gland, white prepupae
 
 11
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 9
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 9
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 11
fat body, pupae P8
 
 37
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 17
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 13
ovary, virgin 4-day female
 
 74
ovary, mated 4-day female
 
 85
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 11
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 21
central nervous system, larvae L3
 
 47
central nervous system, pupae P8
 
 169
head, virgin 1-day female
 
 100
head, virgin 4-day female
 
 87
head, virgin 20-day female
 
 17
head, mated 1-day female
 
 109
head, mated 4-day female
 
 68
head, mated 20-day female
 
 22
head, mated 1-day male
 
 131
head, mated 4-day male
 
 124
head, mated 20-day male
 
 67
salivary gland, larvae L3 wandering
 
 3
salivary gland, white prepupae
 
 11
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 9
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 9
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 11
fat body, pupae P8
 
 37
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 17
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 13
ovary, virgin 4-day female
 
 74
ovary, mated 4-day female
 
 85
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 21
central nervous system, larvae L3
 (47)
central nervous system, pupae P8
 (169)
head, virgin 1-day female
 (100)
head, virgin 4-day female
 (87)
head, virgin 20-day female
 
 17
head, mated 1-day female
 (109)
head, mated 4-day female
 (68)
head, mated 20-day female
 
 22
head, mated 1-day male
 (131)
head, mated 4-day male
 (124)
head, mated 20-day male
 (67)
salivary gland, larvae L3 wandering
 
 3
salivary gland, white prepupae
 
 11
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 9
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 9
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 11
fat body, pupae P8
 (37)
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 17
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 13
ovary, virgin 4-day female
 (74)
ovary, mated 4-day female
 (85)
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 21
central nervous system, larvae L3
 
 47
central nervous system, pupae P8
 (169)
head, virgin 1-day female
 
 100
head, virgin 4-day female
 
 87
head, virgin 20-day female
 
 17
head, mated 1-day female
 109
head, mated 4-day female
 
 68
head, mated 20-day female
 
 22
head, mated 1-day male
 131
head, mated 4-day male
 124
head, mated 20-day male
 
 67
salivary gland, larvae L3 wandering
 
 3
salivary gland, white prepupae
 
 11
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 9
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 9
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 11
fat body, pupae P8
 
 37
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 17
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 13
ovary, virgin 4-day female
 
 74
ovary, mated 4-day female
 
 85
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 21
central nervous system, larvae L3
 
 47
central nervous system, pupae P8
 
 169
head, virgin 1-day female
 
 100
head, virgin 4-day female
 
 87
head, virgin 20-day female
 
 17
head, mated 1-day female
 
 109
head, mated 4-day female
 
 68
head, mated 20-day female
 
 22
head, mated 1-day male
 
 131
head, mated 4-day male
 
 124
head, mated 20-day male
 
 67
salivary gland, larvae L3 wandering
 
 3
salivary gland, white prepupae
 
 11
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 9
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 9
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 11
fat body, pupae P8
 
 37
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 17
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 13
ovary, virgin 4-day female
 
 74
ovary, mated 4-day female
 
 85
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, in adult female stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 16
embryo 02-04hr
 
 8
embryo 04-06hr
 
 10
embryo 06-08hr
 
 9
embryo 08-10hr
 
 8
embryo 10-12hr
 
 7
embryo 12-14hr
 
 9
embryo 14-16hr
 
 6
embryo 16-18hr
 
 9
embryo 18-20hr
 
 8
embryo 20-22hr
 
 12
embryo 22-24hr
 
 16
larva L1
 
 11
larva L2
 
 9
larva L3 12hr old
 
 5
larva L3 puffstage 1-2
 
 3
larva L3 puffstage 3-6
 
 5
larva L3 puffstage 7-9
 
 6
white prepupae new
 
 6
white prepupae 12hr
 
 6
white prepupae 24hr
 
 8
pupae 2d postWPP
 
 13
pupae 3d postWPP
 
 12
pupae 4d postWPP
 
 7
adult male 01day
 
 8
adult male 05day
 
 8
adult male 30day
 
 7
adult female 01day
 
 6
adult female 05day
 
 12
adult female 30day
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 16
embryo 02-04hr
 
 8
embryo 04-06hr
 
 10
embryo 06-08hr
 
 9
embryo 08-10hr
 
 8
embryo 10-12hr
 
 7
embryo 12-14hr
 
 9
embryo 14-16hr
 
 6
embryo 16-18hr
 
 9
embryo 18-20hr
 
 8
embryo 20-22hr
 
 12
embryo 22-24hr
 
 16
larva L1
 
 11
larva L2
 
 9
larva L3 12hr old
 
 5
larva L3 puffstage 1-2
 
 3
larva L3 puffstage 3-6
 
 5
larva L3 puffstage 7-9
 
 6
white prepupae new
 
 6
white prepupae 12hr
 
 6
white prepupae 24hr
 
 8
pupae 2d postWPP
 
 13
pupae 3d postWPP
 
 12
pupae 4d postWPP
 
 7
adult male 01day
 
 8
adult male 05day
 
 8
adult male 30day
 
 7
adult female 01day
 
 6
adult female 05day
 
 12
adult female 30day
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 16
embryo 02-04hr
 
 8
embryo 04-06hr
 
 10
embryo 06-08hr
 
 9
embryo 08-10hr
 
 8
embryo 10-12hr
 
 7
embryo 12-14hr
 
 9
embryo 14-16hr
 
 6
embryo 16-18hr
 
 9
embryo 18-20hr
 
 8
embryo 20-22hr
 
 12
embryo 22-24hr
 
 16
larva L1
 
 11
larva L2
 
 9
larva L3 12hr old
 
 5
larva L3 puffstage 1-2
 
 3
larva L3 puffstage 3-6
 
 5
larva L3 puffstage 7-9
 
 6
white prepupae new
 
 6
white prepupae 12hr
 
 6
white prepupae 24hr
 
 8
pupae 2d postWPP
 
 13
pupae 3d postWPP
 
 12
pupae 4d postWPP
 
 7
adult male 01day
 
 8
adult male 05day
 
 8
adult male 30day
 
 7
adult female 01day
 
 6
adult female 05day
 
 12
adult female 30day
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 16
embryo 02-04hr
 
 8
embryo 04-06hr
 
 10
embryo 06-08hr
 
 9
embryo 08-10hr
 
 8
embryo 10-12hr
 
 7
embryo 12-14hr
 
 9
embryo 14-16hr
 
 6
embryo 16-18hr
 
 9
embryo 18-20hr
 
 8
embryo 20-22hr
 
 12
embryo 22-24hr
 
 16
larva L1
 
 11
larva L2
 
 9
larva L3 12hr old
 
 5
larva L3 puffstage 1-2
 
 3
larva L3 puffstage 3-6
 
 5
larva L3 puffstage 7-9
 
 6
white prepupae new
 
 6
white prepupae 12hr
 
 6
white prepupae 24hr
 
 8
pupae 2d postWPP
 
 13
pupae 3d postWPP
 
 12
pupae 4d postWPP
 
 7
adult male 01day
 
 8
adult male 05day
 
 8
adult male 30day
 
 7
adult female 01day
 
 6
adult female 05day
 
 12
adult female 30day
 
 11
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 16
embryo 02-04hr
 
 8
embryo 04-06hr
 
 10
embryo 06-08hr
 
 9
embryo 08-10hr
 
 8
embryo 10-12hr
 
 7
embryo 12-14hr
 
 9
embryo 14-16hr
 
 6
embryo 16-18hr
 
 9
embryo 18-20hr
 
 8
embryo 20-22hr
 
 12
embryo 22-24hr
 
 16
larva L1
 
 11
larva L2
 
 9
larva L3 12hr old
 
 5
larva L3 puffstage 1-2
 
 3
larva L3 puffstage 3-6
 
 5
larva L3 puffstage 7-9
 
 6
white prepupae new
 
 6
white prepupae 12hr
 
 6
white prepupae 24hr
 
 8
pupae 2d postWPP
 
 13
pupae 3d postWPP
 
 12
pupae 4d postWPP
 
 7
adult male 01day
 
 8
adult male 05day
 
 8
adult male 30day
 
 7
adult female 01day
 
 6
adult female 05day
 
 12
adult female 30day
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 16
embryo 02-04hr
 
 8
embryo 04-06hr
 
 10
embryo 06-08hr
 
 9
embryo 08-10hr
 
 8
embryo 10-12hr
 
 7
embryo 12-14hr
 
 9
embryo 14-16hr
 
 6
embryo 16-18hr
 
 9
embryo 18-20hr
 
 8
embryo 20-22hr
 
 12
embryo 22-24hr
 
 16
larva L1
 
 11
larva L2
 
 9
larva L3 12hr old
 
 5
larva L3 puffstage 1-2
 
 3
larva L3 puffstage 3-6
 
 5
larva L3 puffstage 7-9
 
 6
white prepupae new
 
 6
white prepupae 12hr
 
 6
white prepupae 24hr
 
 8
pupae 2d postWPP
 
 13
pupae 3d postWPP
 
 12
pupae 4d postWPP
 
 7
adult male 01day
 
 8
adult male 05day
 
 8
adult male 30day
 
 7
adult female 01day
 
 6
adult female 05day
 
 12
adult female 30day
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 16
embryo 02-04hr
 
 8
embryo 04-06hr
 
 10
embryo 06-08hr
 
 9
embryo 08-10hr
 
 8
embryo 10-12hr
 
 7
embryo 12-14hr
 
 9
embryo 14-16hr
 
 6
embryo 16-18hr
 
 9
embryo 18-20hr
 
 8
embryo 20-22hr
 
 12
embryo 22-24hr
 
 16
larva L1
 
 11
larva L2
 
 9
larva L3 12hr old
 
 5
larva L3 puffstage 1-2
 
 3
larva L3 puffstage 3-6
 
 5
larva L3 puffstage 7-9
 
 6
white prepupae new
 
 6
white prepupae 12hr
 
 6
white prepupae 24hr
 
 8
pupae 2d postWPP
 
 13
pupae 3d postWPP
 
 12
pupae 4d postWPP
 
 7
adult male 01day
 
 8
adult male 05day
 
 8
adult male 30day
 
 7
adult female 01day
 
 6
adult female 05day
 
 12
adult female 30day
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 16
embryo 02-04hr
 
 8
embryo 04-06hr
 
 10
embryo 06-08hr
 
 9
embryo 08-10hr
 
 8
embryo 10-12hr
 
 7
embryo 12-14hr
 
 9
embryo 14-16hr
 
 6
embryo 16-18hr
 
 9
embryo 18-20hr
 
 8
embryo 20-22hr
 
 12
embryo 22-24hr
 
 16
larva L1
 
 11
larva L2
 
 9
larva L3 12hr old
 
 5
larva L3 puffstage 1-2
 
 3
larva L3 puffstage 3-6
 
 5
larva L3 puffstage 7-9
 
 6
white prepupae new
 
 6
white prepupae 12hr
 
 6
white prepupae 24hr
 
 8
pupae 2d postWPP
 
 13
pupae 3d postWPP
 
 12
pupae 4d postWPP
 
 7
adult male 01day
 
 8
adult male 05day
 
 8
adult male 30day
 
 7
adult female 01day
 
 6
adult female 05day
 
 12
adult female 30day
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 10
embryonic GM2
 
 16
embryonic Kc167
 
 37
embryonic S1
 
 11
embryonic S3
 
 29
leg disc CME L1
 
 18
wing disc CME-W2
 
 24
wing disc ML-DmD8
 
 16
wing disc ML-DmD9
 
 18
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 10
wing disc ML-DmD32
 
 28
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 15
antennal disc ML-DmD20-c5
 
 12
mixed discs ML-DmD4-c1
 
 20
CNS ML-DmBG1-c1
 
 26
CNS ML-DmBG2-c2
 
 18
tumorous blood cells mbn2
 
 29
ovary fGS/OSS
 
 25
ovary OSC
 
 37
ovary OSS
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 10
embryonic GM2
 
 16
embryonic Kc167
 (37)
embryonic S1
 
 11
embryonic S3
 (29)
leg disc CME L1
 
 18
wing disc CME-W2
 
 24
wing disc ML-DmD8
 
 16
wing disc ML-DmD9
 
 18
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 10
wing disc ML-DmD32
 (28)
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 15
antennal disc ML-DmD20-c5
 
 12
mixed discs ML-DmD4-c1
 
 20
CNS ML-DmBG1-c1
 26
CNS ML-DmBG2-c2
 
 18
tumorous blood cells mbn2
 (29)
ovary fGS/OSS
 
 25
ovary OSC
 (37)
ovary OSS
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 10
embryonic GM2
 
 16
embryonic Kc167
 
 37
embryonic S1
 
 11
embryonic S3
 
 29
leg disc CME L1
 
 18
wing disc CME-W2
 
 24
wing disc ML-DmD8
 
 16
wing disc ML-DmD9
 
 18
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 10
wing disc ML-DmD32
 
 28
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 15
antennal disc ML-DmD20-c5
 
 12
mixed discs ML-DmD4-c1
 
 20
CNS ML-DmBG1-c1
 
 26
CNS ML-DmBG2-c2
 
 18
tumorous blood cells mbn2
 
 29
ovary fGS/OSS
 
 25
ovary OSC
 
 37
ovary OSS
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 10
embryonic GM2
 
 16
embryonic Kc167
 
 37
embryonic S1
 
 11
embryonic S3
 
 29
leg disc CME L1
 
 18
wing disc CME-W2
 
 24
wing disc ML-DmD8
 
 16
wing disc ML-DmD9
 
 18
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 10
wing disc ML-DmD32
 
 28
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 15
antennal disc ML-DmD20-c5
 
 12
mixed discs ML-DmD4-c1
 
 20
CNS ML-DmBG1-c1
 
 26
CNS ML-DmBG2-c2
 
 18
tumorous blood cells mbn2
 
 29
ovary fGS/OSS
 
 25
ovary OSC
 
 37
ovary OSS
 
 18
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 10
embryonic GM2
 
 16
embryonic Kc167
 
 37
embryonic S1
 
 11
embryonic S3
 
 29
leg disc CME L1
 
 18
wing disc CME-W2
 
 24
wing disc ML-DmD8
 
 16
wing disc ML-DmD9
 
 18
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 10
wing disc ML-DmD32
 
 28
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 15
antennal disc ML-DmD20-c5
 
 12
mixed discs ML-DmD4-c1
 
 20
CNS ML-DmBG1-c1
 
 26
CNS ML-DmBG2-c2
 
 18
tumorous blood cells mbn2
 
 29
ovary fGS/OSS
 
 25
ovary OSC
 
 37
ovary OSS
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 10
embryonic GM2
 
 16
embryonic Kc167
 (37)
embryonic S1
 
 11
embryonic S3
 29
leg disc CME L1
 
 18
wing disc CME-W2
 
 24
wing disc ML-DmD8
 
 16
wing disc ML-DmD9
 
 18
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 10
wing disc ML-DmD32
 28
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 15
antennal disc ML-DmD20-c5
 
 12
mixed discs ML-DmD4-c1
 
 20
CNS ML-DmBG1-c1
 26
CNS ML-DmBG2-c2
 
 18
tumorous blood cells mbn2
 29
ovary fGS/OSS
 
 25
ovary OSC
 (37)
ovary OSS
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 10
embryonic GM2
 
 16
embryonic Kc167
 
 37
embryonic S1
 
 11
embryonic S3
 
 29
leg disc CME L1
 
 18
wing disc CME-W2
 
 24
wing disc ML-DmD8
 
 16
wing disc ML-DmD9
 
 18
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 10
wing disc ML-DmD32
 
 28
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 15
antennal disc ML-DmD20-c5
 
 12
mixed discs ML-DmD4-c1
 
 20
CNS ML-DmBG1-c1
 
 26
CNS ML-DmBG2-c2
 
 18
tumorous blood cells mbn2
 
 29
ovary fGS/OSS
 
 25
ovary OSC
 
 37
ovary OSS
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 10
embryonic GM2
 
 16
embryonic Kc167
 
 37
embryonic S1
 
 11
embryonic S3
 
 29
leg disc CME L1
 
 18
wing disc CME-W2
 
 24
wing disc ML-DmD8
 
 16
wing disc ML-DmD9
 
 18
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 10
wing disc ML-DmD32
 
 28
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 15
antennal disc ML-DmD20-c5
 
 12
mixed discs ML-DmD4-c1
 
 20
CNS ML-DmBG1-c1
 
 26
CNS ML-DmBG2-c2
 
 18
tumorous blood cells mbn2
 
 29
ovary fGS/OSS
 
 25
ovary OSC
 
 37
ovary OSS
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 32
cold shock, 4-day adult
 
 24
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 7
Cadmium 50 mM 12 hrs, larvae L3
 
 12
Cadmium 50 mM 48 hrs, 4-day adult
 
 27
Cadmium 100 mM 48 hrs, 4-day adult
 
 74
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 100
Zinc 5 mM 12 hrs, larvae L3
 
 15
Zinc 4.5 mM 48 hrs, 4-day adult
 
 62
Ethanol 2.5% 3 hrs, larvae L3
 
 28
Ethanol 5% 3 hrs, larvae L3
 
 9
Ethanol 10% 3 hrs, larvae L3
 
 8
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 65
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 38
Paraquat 5 mM 48 hrs, 4-day adult
 
 47
Paraquat 10 mM 48 hrs, 4-day adult
 
 24
Rotenone 2 μg 12 hrs, larvae L3
 
 12
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 (32)
cold shock, 4-day adult
 
 24
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 7
Cadmium 50 mM 12 hrs, larvae L3
 
 12
Cadmium 50 mM 48 hrs, 4-day adult
 (27)
Cadmium 100 mM 48 hrs, 4-day adult
 (74)
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 (100)
Zinc 5 mM 12 hrs, larvae L3
 
 15
Zinc 4.5 mM 48 hrs, 4-day adult
 (62)
Ethanol 2.5% 3 hrs, larvae L3
 (28)
Ethanol 5% 3 hrs, larvae L3
 
 9
Ethanol 10% 3 hrs, larvae L3
 
 8
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (65)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (38)
Paraquat 5 mM 48 hrs, 4-day adult
 (47)
Paraquat 10 mM 48 hrs, 4-day adult
 
 24
Rotenone 2 μg 12 hrs, larvae L3
 
 12
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 32
cold shock, 4-day adult
 
 24
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 7
Cadmium 50 mM 12 hrs, larvae L3
 
 12
Cadmium 50 mM 48 hrs, 4-day adult
 
 27
Cadmium 100 mM 48 hrs, 4-day adult
 
 74
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 100
Zinc 5 mM 12 hrs, larvae L3
 
 15
Zinc 4.5 mM 48 hrs, 4-day adult
 
 62
Ethanol 2.5% 3 hrs, larvae L3
 
 28
Ethanol 5% 3 hrs, larvae L3
 
 9
Ethanol 10% 3 hrs, larvae L3
 
 8
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 65
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 38
Paraquat 5 mM 48 hrs, 4-day adult
 
 47
Paraquat 10 mM 48 hrs, 4-day adult
 
 24
Rotenone 2 μg 12 hrs, larvae L3
 
 12
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 32
cold shock, 4-day adult
 
 24
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 7
Cadmium 50 mM 12 hrs, larvae L3
 
 12
Cadmium 50 mM 48 hrs, 4-day adult
 
 27
Cadmium 100 mM 48 hrs, 4-day adult
 
 74
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 100
Zinc 5 mM 12 hrs, larvae L3
 
 15
Zinc 4.5 mM 48 hrs, 4-day adult
 
 62
Ethanol 2.5% 3 hrs, larvae L3
 
 28
Ethanol 5% 3 hrs, larvae L3
 
 9
Ethanol 10% 3 hrs, larvae L3
 
 8
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 65
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 38
Paraquat 5 mM 48 hrs, 4-day adult
 
 47
Paraquat 10 mM 48 hrs, 4-day adult
 
 24
Rotenone 2 μg 12 hrs, larvae L3
 
 12
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 32
cold shock, 4-day adult
 
 24
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 7
Cadmium 50 mM 12 hrs, larvae L3
 
 12
Cadmium 50 mM 48 hrs, 4-day adult
 
 27
Cadmium 100 mM 48 hrs, 4-day adult
 
 74
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 100
Zinc 5 mM 12 hrs, larvae L3
 
 15
Zinc 4.5 mM 48 hrs, 4-day adult
 
 62
Ethanol 2.5% 3 hrs, larvae L3
 
 28
Ethanol 5% 3 hrs, larvae L3
 
 9
Ethanol 10% 3 hrs, larvae L3
 
 8
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 65
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 38
Paraquat 5 mM 48 hrs, 4-day adult
 
 47
Paraquat 10 mM 48 hrs, 4-day adult
 
 24
Rotenone 2 μg 12 hrs, larvae L3
 
 12
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 32
cold shock, 4-day adult
 
 24
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 7
Cadmium 50 mM 12 hrs, larvae L3
 
 12
Cadmium 50 mM 48 hrs, 4-day adult
 27
Cadmium 100 mM 48 hrs, 4-day adult
 (74)
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 (100)
Zinc 5 mM 12 hrs, larvae L3
 
 15
Zinc 4.5 mM 48 hrs, 4-day adult
 (62)
Ethanol 2.5% 3 hrs, larvae L3
 28
Ethanol 5% 3 hrs, larvae L3
 
 9
Ethanol 10% 3 hrs, larvae L3
 
 8
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (65)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (38)
Paraquat 5 mM 48 hrs, 4-day adult
 (47)
Paraquat 10 mM 48 hrs, 4-day adult
 
 24
Rotenone 2 μg 12 hrs, larvae L3
 
 12
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 32
cold shock, 4-day adult
 
 24
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 7
Cadmium 50 mM 12 hrs, larvae L3
 
 12
Cadmium 50 mM 48 hrs, 4-day adult
 
 27
Cadmium 100 mM 48 hrs, 4-day adult
 
 74
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 100
Zinc 5 mM 12 hrs, larvae L3
 
 15
Zinc 4.5 mM 48 hrs, 4-day adult
 
 62
Ethanol 2.5% 3 hrs, larvae L3
 
 28
Ethanol 5% 3 hrs, larvae L3
 
 9
Ethanol 10% 3 hrs, larvae L3
 
 8
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 65
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 38
Paraquat 5 mM 48 hrs, 4-day adult
 
 47
Paraquat 10 mM 48 hrs, 4-day adult
 
 24
Rotenone 2 μg 12 hrs, larvae L3
 
 12
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 32
cold shock, 4-day adult
 
 24
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 7
Cadmium 50 mM 12 hrs, larvae L3
 
 12
Cadmium 50 mM 48 hrs, 4-day adult
 
 27
Cadmium 100 mM 48 hrs, 4-day adult
 
 74
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 100
Zinc 5 mM 12 hrs, larvae L3
 
 15
Zinc 4.5 mM 48 hrs, 4-day adult
 
 62
Ethanol 2.5% 3 hrs, larvae L3
 
 28
Ethanol 5% 3 hrs, larvae L3
 
 9
Ethanol 10% 3 hrs, larvae L3
 
 8
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 65
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 38
Paraquat 5 mM 48 hrs, 4-day adult
 
 47
Paraquat 10 mM 48 hrs, 4-day adult
 
 24
Rotenone 2 μg 12 hrs, larvae L3
 
 12
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyExpress - Embryonic expression images (BDGP data)
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 28 )
For All Classical Alleles Show

Allele of 4EHPClassMutagenStocksKnown lesion
4EHPe031642 --
4EHP05b
1 Yes
4EHP067371 Yes
4EHP5-HA-1159
1 --
4EHPBG017131 --
4EHPc005881 --
4EHPc020591 --
4EHPc058411 --
4EHPc059431 --
4EHPc067681 --
4EHPd02782
1 --
4EHPd067951 --
4EHPe011651 --
4EHPe044171 --
4EHPe044181 --
4EHPEY083691 --
4EHPf01079
1 --
4EHPf028391 --
4EHPf030381 --
4EHPMI03197
1 --
4EHPNP0665
1 --
4EHPNP5345
1 --
4EHP106600 Yes
4EHPCB054170 Yes
4EHPCP53hypomorphic allele - genetic evidence0 Yes
4EHPd06886
0 --
4EHPDG10811
0 --
4EHPEP32150 Yes
hide Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show

Allele of 4EHPClassMutagenStocksKnown lesion
4EHPGD70712 Yes
4EHPGL010351 Yes
4EHPScer\UAS.P\T.cCa0 Yes
4EHPW114A.Scer\UAS.P\T0 Yes
4EHPW85F.Scer\UAS.P\T0 Yes
hide Aneuploid Aberrations
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap
insertion of enhancer trap binary system
hide Gene Ontology: Function, Process & Cellular Component ( 11 unique terms )
hide Terms Based on Experimental Evidence ( 8 terms )
Molecular Function
CV term
References
inferred from physical interaction with bcd
inferred from physical interaction with brat
inferred from genetic interaction with bcd
Biological Process
CV term
References
inferred from genetic interaction with bcd
inferred from mutant phenotype
Cellular Component ( 0 terms)
hide Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
inferred from sequence or structural similarity with EMBL:AF038957
Cellular Component
CV term
References
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
protein-protein
Interacting group
Assay
References
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
4EHP allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
hide OrthoDB Orthologs (39) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG66WZVQ)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
Y
 
Drosophila sechellia
 
Y
 
Drosophila erecta
 
Y
 
Drosophila yakuba
 
Y
 
Drosophila ananassae
 
Y
 
Drosophila pseudoobscura pseudoobscura
 
Y
 
Drosophila persimilis
 
Y
 
Drosophila willistoni
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
Y
 
Drosophila grimshawi
 
Y
 
hideOrthologs in non-Drosophila Dipterans (EOG6WM53S)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
 
Anopheles gambiae
Malaria mosquito 
 
Culex quinquefasciatus
Southern house mosquito 
 
hideOrthologs in non-Dipteran Insects (EOG66HF6V)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\4EHP
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG010640
 
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\AECH19644
 
Atta cephalotes
Leafcutter ant 
Acep\ACEP16284
 
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO15870
 
Linepithema humile
Argentine ant 
Lhum\LH23481
 
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB10924
 
Solenopsis invicta
Red fire ant 
Sinv\SINV14953
 
Acyrthosiphon pisum
Pea aphid 
 
Bombyx mori
Silkmoth 
 
Pediculus humanus
Human body louse 
 
Tribolium castaneum
Red flour beetle 
 
hideOrthologs in non-Insect Arthropods (EOG61NS35)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
 
Ixodes scapularis
Deer tick 
 
hideOrthologs in non-Arthropod Metazoa (EOG67Q91P)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Caenorhabditis elegans
Nematode 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Danio rerio
Zebrafish 
 
Danio rerio
Zebrafish 
 
Xenopus tropicalis
Western clawed frog 
 
Xenopus tropicalis
Western clawed frog 
 
Gallus gallus
Domestic chicken 
 
Mus musculus
House mouse 
 
Rattus norvegicus
Norway rat 
 
Homo sapiens
Human 
 
hide Human Orthologs (1)
Gene
OMIM
HGNC
hideAAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila simulans
Drosophila sechellia
Drosophila erecta
Drosophila yakuba
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila persimilis
Drosophila willistoni
Drosophila virilis
Drosophila mojavensis
Drosophila grimshawi
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 26 )
Harvard
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 145 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for identity of: 4EHP CG33100
Source for database merge of
Additional comments
Annotation CG10716 split into CG33100 and CG31136 (Syx1A) in release 3 of the genome annotation. In addition release 3 annotation CG31136 (Syx1A) contains sequences corresponding to release 2 annotation CG18615.
hide Other Comments
brat and 4EHP interact physically and both play a role in hb regulation.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
hide Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym
Name Synonym
eIF4E-Homologous Protein
 
Secondary FlyBase IDs
  • FBgn0039148
hide References ( 49 )
Generate a list of
List References by type
hide Recent research papers ( 6 )
Hernandez et al., 2012, Development 139(17): 3211--3220
Eukaryotic initiation factor 4E-3 is essential for meiotic chromosome segregation, cytokinesis and male fertility in Drosophila. [FBrf0219080]
Tettweiler et al., 2012, Comp. Funct. Genomics 2012: 960420
The Distribution of eIF4E-Family Members across Insecta. [FBrf0218730]
Weidmann and Goldstrohm, 2012, Mol. Cell. Biol. 32(2): 527--540
Drosophila Pumilio Protein Contains Multiple Autonomous Repression Domains That Regulate mRNAs Independently of Nanos and Brain Tumor. [FBrf0217089]
Carreira et al., 2011, BMC Dev. Biol. 11: 32
Genetic basis of wing morphogenesis in Drosophila: sexual dimorphism and non-allometric effects of shape variation. [FBrf0214273]
Singh et al., 2011, Dev. Biol. 352(1): 104--115
The Bin3 RNA methyltransferase is required for repression of caudal translation in the Drosophila embryo. [FBrf0213172]
Yarunin et al., 2011, RNA Biol. 8(5): 904--912
Patterning of the Drosophila oocyte by a sequential translation repression program involving the d4EHP and Belle translational repressors. [FBrf0217939]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2011