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Gene Dmel\CG33123

General Information
Symbol	Dmel\CG33123	Species	D. melanogaster
Name		Annotation symbol	CG33123
Feature type	protein_coding_gene	FlyBase ID	FBgn0053123
Gene Model Status	Current	Stock availability	9 publicly available
Also Known As	CG3229
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	23F6-23F6	Sequence location	2L:3,510,477..3,514,662 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG33123 (FBgn0053123). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: leucine-tRNA ligase activity. There is experimental evidence that it is involved in the biological process: neurogenesis. 6 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; Aminoacyl-tRNA synthetase, class I (M); Aminoacyl-tRNA synthetase, class I, conserved site; Aminoacyl-tRNA synthetase, class Ia; Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic; Rossmann-like alpha/beta/alpha sandwich fold; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval salivary gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, adult fat body, adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1623193_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG33123. Gene sequence location is 2L:3510477..3514662.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	References Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593
FB2012_01	Sequence features BKN22468 HFA00581
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 23F6-23F6   Limits computationally determined from genome sequence between P{EP}ThorEP818&P{lacW}Thork07736 and P{PZ}oddrF111&P{PZ}for06860
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG33123 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG33123-RA FBtr0077562  NM_175954   3791   1182
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG33123-PA   FBpp0077251   134.9   1182   7.69     NP_787968   AAF51096
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Aminoacyl-tRNA synthetase, class I, conserved site (IPR001412) Aminoacyl-tRNA synthetase, class Ia (IPR002300) Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic (IPR004493) Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing domain (IPR009008) Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (IPR009080) Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (IPR013155) Rossmann-like alpha/beta/alpha sandwich fold (IPR014729) Aminoacyl-tRNA synthetase, class I (M) (IPR015413)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAF51096   AF083318   AI260347   AI519549   AI533167   AI534724   AI542128   AI544268   AW944523   AY119663 AAM50317   BE978136   BF490396   BF494814   BG641218   BI163794   BI240147   BI355079   BI482937   BI485467   CO281117   CO333477   CZ466745   CZ468495   EC051418   EC051421   EC051471   EC052411   EC053435   EC053436   EC053475   EC053890   EC054922   EC054958   EC056270   EC073220   EC085568   EC251253   EV575993   EV579722   EV580891   EV593947   EV595983   GH756610   GH758906   GH776084   GH777459   GH782641   GH785130   GH787288   GH799358   GH811012   GH847770   GH863843   GH869144   GH871619   GH873969   GH878637   GH878669   GH900152   GH910835   GH915463   GH916497   GH918361   GH923203   GH927101
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8MRF8 Q9VQR8
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0053123    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0053123 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0053123 expression level Developmental Stage   Expression Level embryo 00-02hr    4128 embryo 02-04hr    541 embryo 04-06hr    1137 embryo 06-08hr    1844 embryo 08-10hr    1987 embryo 10-12hr    2218 embryo 12-14hr    2197 embryo 14-16hr    1656 embryo 16-18hr    1339 embryo 18-20hr    894 embryo 20-22hr    884 embryo 22-24hr    892 larva L1    2968 larva L2    3242 larva L3 12hr old    2244 larva L3 puffstage 1-2    908 larva L3 puffstage 3-6    1037 larva L3 puffstage 7-9    1252 white prepupae new    1347 white prepupae 12hr    944 white prepupae 24hr    1147 pupae 2d postWPP    1283 pupae 3d postWPP    1004 pupae 4d postWPP    735 adult male 01day    996 adult male 05day    945 adult male 30day    924 adult female 01day    2786 adult female 05day    4809 adult female 30day    4323 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (4128) embryo 02-04hr  (541) embryo 04-06hr  (1137) embryo 06-08hr  (1844) embryo 08-10hr  (1987) embryo 10-12hr  (2218) embryo 12-14hr  (2197) embryo 14-16hr  (1656) embryo 16-18hr  (1339) embryo 18-20hr  (894) embryo 20-22hr  (884) embryo 22-24hr  (892) larva L1  (2968) larva L2  (3242) larva L3 12hr old  (2244) larva L3 puffstage 1-2  (908) larva L3 puffstage 3-6  (1037) larva L3 puffstage 7-9  (1252) white prepupae new  (1347) white prepupae 12hr  (944) white prepupae 24hr  (1147) pupae 2d postWPP  (1283) pupae 3d postWPP  (1004) pupae 4d postWPP  (735) adult male 01day  (996) adult male 05day  (945) adult male 30day  (924) adult female 01day  (2786) adult female 05day  (4809) adult female 30day  (4323) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (4128) embryo 02-04hr    541 embryo 04-06hr    1137 embryo 06-08hr  (1844) embryo 08-10hr  (1987) embryo 10-12hr  (2218) embryo 12-14hr  (2197) embryo 14-16hr  (1656) embryo 16-18hr    1339 embryo 18-20hr    894 embryo 20-22hr    884 embryo 22-24hr    892 larva L1  (2968) larva L2  (3242) larva L3 12hr old  (2244) larva L3 puffstage 1-2    908 larva L3 puffstage 3-6    1037 larva L3 puffstage 7-9    1252 white prepupae new    1347 white prepupae 12hr    944 white prepupae 24hr    1147 pupae 2d postWPP    1283 pupae 3d postWPP    1004 pupae 4d postWPP    735 adult male 01day    996 adult male 05day    945 adult male 30day    924 adult female 01day  (2786) adult female 05day  (4809) adult female 30day  (4323) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4128 embryo 02-04hr    541 embryo 04-06hr    1137 embryo 06-08hr    1844 embryo 08-10hr    1987 embryo 10-12hr    2218 embryo 12-14hr    2197 embryo 14-16hr    1656 embryo 16-18hr    1339 embryo 18-20hr    894 embryo 20-22hr    884 embryo 22-24hr    892 larva L1    2968 larva L2    3242 larva L3 12hr old    2244 larva L3 puffstage 1-2    908 larva L3 puffstage 3-6    1037 larva L3 puffstage 7-9    1252 white prepupae new    1347 white prepupae 12hr    944 white prepupae 24hr    1147 pupae 2d postWPP    1283 pupae 3d postWPP    1004 pupae 4d postWPP    735 adult male 01day    996 adult male 05day    945 adult male 30day    924 adult female 01day    2786 adult female 05day    4809 adult female 30day    4323 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4128 embryo 02-04hr    541 embryo 04-06hr    1137 embryo 06-08hr    1844 embryo 08-10hr    1987 embryo 10-12hr    2218 embryo 12-14hr    2197 embryo 14-16hr    1656 embryo 16-18hr    1339 embryo 18-20hr    894 embryo 20-22hr    884 embryo 22-24hr    892 larva L1    2968 larva L2    3242 larva L3 12hr old    2244 larva L3 puffstage 1-2    908 larva L3 puffstage 3-6    1037 larva L3 puffstage 7-9    1252 white prepupae new    1347 white prepupae 12hr    944 white prepupae 24hr    1147 pupae 2d postWPP    1283 pupae 3d postWPP    1004 pupae 4d postWPP    735 adult male 01day    996 adult male 05day    945 adult male 30day    924 adult female 01day    2786 adult female 05day    4809 adult female 30day    4323 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0053123 expression level Developmental Stage   Expression Level embryo 00-02hr    4128 embryo 02-04hr    541 embryo 04-06hr    1137 embryo 06-08hr    1844 embryo 08-10hr    1987 embryo 10-12hr    2218 embryo 12-14hr    2197 embryo 14-16hr    1656 embryo 16-18hr    1339 embryo 18-20hr    894 embryo 20-22hr    884 embryo 22-24hr    892 larva L1    2968 larva L2    3242 larva L3 12hr old    2244 larva L3 puffstage 1-2    908 larva L3 puffstage 3-6    1037 larva L3 puffstage 7-9    1252 white prepupae new    1347 white prepupae 12hr    944 white prepupae 24hr    1147 pupae 2d postWPP    1283 pupae 3d postWPP    1004 pupae 4d postWPP    735 adult male 01day    996 adult male 05day    945 adult male 30day    924 adult female 01day    2786 adult female 05day    4809 adult female 30day    4323 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (4128) embryo 02-04hr  (541) embryo 04-06hr  (1137) embryo 06-08hr  (1844) embryo 08-10hr  (1987) embryo 10-12hr  (2218) embryo 12-14hr  (2197) embryo 14-16hr  (1656) embryo 16-18hr  (1339) embryo 18-20hr  (894) embryo 20-22hr  (884) embryo 22-24hr  (892) larva L1  (2968) larva L2  (3242) larva L3 12hr old  (2244) larva L3 puffstage 1-2  (908) larva L3 puffstage 3-6  (1037) larva L3 puffstage 7-9  (1252) white prepupae new  (1347) white prepupae 12hr  (944) white prepupae 24hr  (1147) pupae 2d postWPP  (1283) pupae 3d postWPP  (1004) pupae 4d postWPP  (735) adult male 01day  (996) adult male 05day  (945) adult male 30day  (924) adult female 01day  (2786) adult female 05day  (4809) adult female 30day  (4323) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (4128) embryo 02-04hr    541 embryo 04-06hr    1137 embryo 06-08hr  1844 embryo 08-10hr  1987 embryo 10-12hr  2218 embryo 12-14hr  2197 embryo 14-16hr  1656 embryo 16-18hr    1339 embryo 18-20hr    894 embryo 20-22hr    884 embryo 22-24hr    892 larva L1  (2968) larva L2  (3242) larva L3 12hr old  2244 larva L3 puffstage 1-2    908 larva L3 puffstage 3-6    1037 larva L3 puffstage 7-9    1252 white prepupae new    1347 white prepupae 12hr    944 white prepupae 24hr    1147 pupae 2d postWPP    1283 pupae 3d postWPP    1004 pupae 4d postWPP    735 adult male 01day    996 adult male 05day    945 adult male 30day    924 adult female 01day  (2786) adult female 05day  (4809) adult female 30day  (4323) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4128 embryo 02-04hr    541 embryo 04-06hr    1137 embryo 06-08hr    1844 embryo 08-10hr    1987 embryo 10-12hr    2218 embryo 12-14hr    2197 embryo 14-16hr    1656 embryo 16-18hr    1339 embryo 18-20hr    894 embryo 20-22hr    884 embryo 22-24hr    892 larva L1    2968 larva L2    3242 larva L3 12hr old    2244 larva L3 puffstage 1-2    908 larva L3 puffstage 3-6    1037 larva L3 puffstage 7-9    1252 white prepupae new    1347 white prepupae 12hr    944 white prepupae 24hr    1147 pupae 2d postWPP    1283 pupae 3d postWPP    1004 pupae 4d postWPP    735 adult male 01day    996 adult male 05day    945 adult male 30day    924 adult female 01day    2786 adult female 05day    4809 adult female 30day    4323 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4128 embryo 02-04hr    541 embryo 04-06hr    1137 embryo 06-08hr    1844 embryo 08-10hr    1987 embryo 10-12hr    2218 embryo 12-14hr    2197 embryo 14-16hr    1656 embryo 16-18hr    1339 embryo 18-20hr    894 embryo 20-22hr    884 embryo 22-24hr    892 larva L1    2968 larva L2    3242 larva L3 12hr old    2244 larva L3 puffstage 1-2    908 larva L3 puffstage 3-6    1037 larva L3 puffstage 7-9    1252 white prepupae new    1347 white prepupae 12hr    944 white prepupae 24hr    1147 pupae 2d postWPP    1283 pupae 3d postWPP    1004 pupae 4d postWPP    735 adult male 01day    996 adult male 05day    945 adult male 30day    924 adult female 01day    2786 adult female 05day    4809 adult female 30day    4323 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0053123    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0053123 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval salivary gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, adult fat body, adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0053123 expression level Tissue   Expression Level Larval Central Nervous System    244.475 Larval Midgut    87.8 Larval Hindgut    176.2 Larval Malpighian Tubules    75.1 Larval Fat Body    71.4 Larval Salivary Gland    532.6 Larval Trachea    220.275 Larval Carcass    280.1 Adult Head    119.6 Adult Eye    237.475 Adult Brain    89.4 Adult Thoracic-Abdominal Ganglion    102 Adult Crop    145.9 Adult Midgut    124.7 Adult Hindgut    101.8 Adult Malpighian Tubules    167.7 Adult Fat Body    236.1 Adult Salivary Gland    227.1 Adult Heart    133.35 Adult VirginFemale Spermatheca    167.5 Adult InseminatedFemale Spermatheca    220.6 Adult Ovary    411.5 Adult Testis    66.9 Adult Male Accessory Gland    453.8 Adult Carcass    135.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    244.475 Larval Midgut    87.8 Larval Hindgut    176.2 Larval Malpighian Tubules    75.1 Larval Fat Body    71.4 Larval Salivary Gland  532.6 Larval Trachea    220.275 Larval Carcass    280.1 Adult Head    119.6 Adult Eye    237.475 Adult Brain    89.4 Adult Thoracic-Abdominal Ganglion    102 Adult Crop    145.9 Adult Midgut    124.7 Adult Hindgut    101.8 Adult Malpighian Tubules    167.7 Adult Fat Body    236.1 Adult Salivary Gland    227.1 Adult Heart    133.35 Adult VirginFemale Spermatheca    167.5 Adult InseminatedFemale Spermatheca    220.6 Adult Ovary    411.5 Adult Testis    66.9 Adult Male Accessory Gland    453.8 Adult Carcass    135.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    244.475 Larval Midgut    87.8 Larval Hindgut    176.2 Larval Malpighian Tubules    75.1 Larval Fat Body    71.4 Larval Salivary Gland    532.6 Larval Trachea    220.275 Larval Carcass    280.1 Adult Head    119.6 Adult Eye    237.475 Adult Brain    89.4 Adult Thoracic-Abdominal Ganglion    102 Adult Crop    145.9 Adult Midgut    124.7 Adult Hindgut    101.8 Adult Malpighian Tubules    167.7 Adult Fat Body    236.1 Adult Salivary Gland    227.1 Adult Heart    133.35 Adult VirginFemale Spermatheca    167.5 Adult InseminatedFemale Spermatheca    220.6 Adult Ovary    411.5 Adult Testis    66.9 Adult Male Accessory Gland    453.8 Adult Carcass    135.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    244.475 Larval Midgut    87.8 Larval Hindgut    176.2 Larval Malpighian Tubules    75.1 Larval Fat Body    71.4 Larval Salivary Gland    532.6 Larval Trachea    220.275 Larval Carcass    280.1 Adult Head    119.6 Adult Eye    237.475 Adult Brain    89.4 Adult Thoracic-Abdominal Ganglion    102 Adult Crop    145.9 Adult Midgut    124.7 Adult Hindgut    101.8 Adult Malpighian Tubules    167.7 Adult Fat Body    236.1 Adult Salivary Gland    227.1 Adult Heart    133.35 Adult VirginFemale Spermatheca    167.5 Adult InseminatedFemale Spermatheca    220.6 Adult Ovary    411.5 Adult Testis    66.9 Adult Male Accessory Gland    453.8 Adult Carcass    135.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0053123 expression level Tissue   Expression Level Larval Central Nervous System    244.475 Larval Midgut    87.8 Larval Hindgut    176.2 Larval Malpighian Tubules    75.1 Larval Fat Body    71.4 Larval Salivary Gland    532.6 Larval Trachea    220.275 Larval Carcass    280.1 Adult Head    119.6 Adult Eye    237.475 Adult Brain    89.4 Adult Thoracic-Abdominal Ganglion    102 Adult Crop    145.9 Adult Midgut    124.7 Adult Hindgut    101.8 Adult Malpighian Tubules    167.7 Adult Fat Body    236.1 Adult Salivary Gland    227.1 Adult Heart    133.35 Adult VirginFemale Spermatheca    167.5 Adult InseminatedFemale Spermatheca    220.6 Adult Ovary    411.5 Adult Testis    66.9 Adult Male Accessory Gland    453.8 Adult Carcass    135.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    244.475 Larval Midgut    87.8 Larval Hindgut    176.2 Larval Malpighian Tubules    75.1 Larval Fat Body    71.4 Larval Salivary Gland  532.6 Larval Trachea    220.275 Larval Carcass    280.1 Adult Head    119.6 Adult Eye    237.475 Adult Brain    89.4 Adult Thoracic-Abdominal Ganglion    102 Adult Crop    145.9 Adult Midgut    124.7 Adult Hindgut    101.8 Adult Malpighian Tubules    167.7 Adult Fat Body    236.1 Adult Salivary Gland    227.1 Adult Heart    133.35 Adult VirginFemale Spermatheca    167.5 Adult InseminatedFemale Spermatheca    220.6 Adult Ovary    411.5 Adult Testis    66.9 Adult Male Accessory Gland    453.8 Adult Carcass    135.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    244.475 Larval Midgut    87.8 Larval Hindgut    176.2 Larval Malpighian Tubules    75.1 Larval Fat Body    71.4 Larval Salivary Gland    532.6 Larval Trachea    220.275 Larval Carcass    280.1 Adult Head    119.6 Adult Eye    237.475 Adult Brain    89.4 Adult Thoracic-Abdominal Ganglion    102 Adult Crop    145.9 Adult Midgut    124.7 Adult Hindgut    101.8 Adult Malpighian Tubules    167.7 Adult Fat Body    236.1 Adult Salivary Gland    227.1 Adult Heart    133.35 Adult VirginFemale Spermatheca    167.5 Adult InseminatedFemale Spermatheca    220.6 Adult Ovary    411.5 Adult Testis    66.9 Adult Male Accessory Gland    453.8 Adult Carcass    135.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    244.475 Larval Midgut    87.8 Larval Hindgut    176.2 Larval Malpighian Tubules    75.1 Larval Fat Body    71.4 Larval Salivary Gland    532.6 Larval Trachea    220.275 Larval Carcass    280.1 Adult Head    119.6 Adult Eye    237.475 Adult Brain    89.4 Adult Thoracic-Abdominal Ganglion    102 Adult Crop    145.9 Adult Midgut    124.7 Adult Hindgut    101.8 Adult Malpighian Tubules    167.7 Adult Fat Body    236.1 Adult Salivary Gland    227.1 Adult Heart    133.35 Adult VirginFemale Spermatheca    167.5 Adult InseminatedFemale Spermatheca    220.6 Adult Ovary    411.5 Adult Testis    66.9 Adult Male Accessory Gland    453.8 Adult Carcass    135.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    119.6   NA  Eye    237.475   NA  Brain    89.4   244.475  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    102   NA  Crop    145.9   87.8  Midgut    124.7   176.2  Hindgut    101.8   75.1  Malpighian Tubules    167.7   71.4  Fat Body    236.1   532.6  Salivary Gland    227.1   NA  Heart    133.35   220.275  Trachea    NA   NA  VirginFemale Spermatheca    167.5   NA  InseminatedFemale Spermatheca    220.6   NA  Ovary    411.5   NA  Testis    66.9   NA  Male Accessory Gland    453.8   280.1  Carcass    135.3 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_03
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0053123 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG33123-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL41407 CG33123GD10844 lethal, with Scer\GAL4pnr-MD237 CG33123GD10844 Other Phenotypes Allele neuroanatomy defective | larval stage, with Scer\GAL41407 CG33123GD10844 Phenotype manifest in Allele embryonic/larval neuroblast | larval stage, with Scer\GAL41407 CG33123GD10844 ganglion mother cell | larval stage, with Scer\GAL41407 CG33123GD10844
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of CG33123 Class Mutagen Stocks Known lesion CG33123c00827 piggyBac transposase 2 -- CG33123c03210 piggyBac transposase 2 -- CG33123SH0501 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG33123 Class Mutagen Stocks Known lesion CG33123GD10844 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG33123HMS01335 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG33123KK102387 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10844} NA P{KK102387} NA P{TRiP.HMS01335} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{PB}CG33123c00827 NA PBac{PB}CG33123c03210 NA insertion of enhancer trap P{lacW}CG33123SH0501 No
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component
CV term Evidence References
microtubule associated complex inferred from direct assay (Hughes et al., 2008)
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
ATP binding inferred from electronic annotation with InterPro:IPR001412, InterPro:IPR002300, InterPro:IPR004493, InterPro:IPR009008, InterPro:IPR009080, InterPro:IPR013155, InterPro:IPR015413 (FlyBase Curators et al., 2004-) leucine-tRNA ligase activity inferred from sequence or structural similarity with NCBI:NP_064502 (FlyBase Genome Annotators, 2002-2003)
Biological Process
CV term Evidence References
leucyl-tRNA aminoacylation inferred from electronic annotation with InterPro:IPR004493 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
cytoplasm inferred from electronic annotation with InterPro:IPR001412, InterPro:IPR002300, InterPro:IPR004493, InterPro:IPR009008, InterPro:IPR009080, InterPro:IPR013155, InterPro:IPR015413 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG33123 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 77512 DroID - A comprehensive database of gene and protein interactions. • FBgn0053123 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 326262
Orthologs
Genome-wide drosophilid orthologs	Dana\GF14667 Dere\GG24431 Dgri\GH13195 Dmoj\GI17774 Dper\GL19473 Dpse\GA17300 Dsec\GM18143 Dsim\GD22750 Dvir\GJ17599 Dwil\GK14672 Dyak\GE14851
Curated drosophilid orthologs	Dpse\GA17300
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL006415-PA Aedes aegypti (mosquito) AGAP008297-PA Anopheles gambiae (mosquito) XP_395743.2 Apis mellifera (honey bee) XP_001944432.1 Acyrthosiphon pisum (pea aphid) At1g09620.1 Arabidopsis thaliana (wall cress) 15609 Batrachochytrium dendrobatidis (chytrid fungus) 63907 Branchiostoma floridae (lancelet) XP_001896500.1 Brugia malayi (roundworm nematode) BGIBMGA001037-PA Bombyx mori (silk worm) ENSBTAP00000008902 Bos taurus (bovine) CAL0002497 Candida albicans (a form of yeast) CN29756 Caenorhabditis brenneri (small nematode) CBP29083 Caenorhabditis briggsae (nematode) CE16317 Caenorhabditis elegans (worm) ENSCAFP00000009651 Canis familiaris (dog) CAGL0J03652g Candida glabrata (haploid yeast) ENSCINP00000017407 Ciona intestinalis (sea squirt) JA05234 Caenorhabditis japonica (nematode) CMQ336C Cyanidioschyzon merolae (red alga) cn13118 Cryptococcus neoformans (yeast-like fungus) CPIJ007075 Culex pipens (mosquito) ENSCPOP00000011092 Cavia porcellus (guinea pig) RP36786 Caenorhabditis remanei (nematode) ENSCSAVP00000015407 Ciona savignyi (sedentary tunicate) 170431 Capitella spl (polychaete worm) DDB0231253 Dictyostelium discoideum (amoeba) DEHA2F07414g Debaryomyces Hansenii (yeast) 300874 Daphnia pulex (daphnia) ENSDARP00000003359 Danio rerio (zebra fish) ENSECAP00000007796 Equus caballus (horse) XP_649157 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000027395 Gymnopilus aculeatus (mushroom) ENSGALP00000012100 Gallus gallus (chicken) GL50803_8621 Giardia lamblia (flagellated protozoan) 157396 Hypsipyla robusta (cedar shoot borer) ENSP00000377954 Homo sapiens (human) ISCW017581-PA Ixodes scapularis (deer tick) KLLA0D06105g Kluyveromyces lactis (yeast) 209438 Lottia gigantea (owl limpet) LmjF13.1100 Leishmania major (virus) 20503 Monocosta brevicollis (choanoflagellate) ENSMODP00000031481 Monodelphis domestica (gray opossum) ENSMUSP00000095197 Mus musculus (house mouse) ENSOANP00000009171 Ornithorynchus anatinus (platypus) ENSORLP00000002016 Oryzias latipes (japanese killifish) LOC_Os09g21110.1 Oryza sativa (asian rice) 10601 Ostreococcus tauri (green alga) PFF1095w Plasmodium falciparum (protozoal parasite) PHUM001141-PA Pediculus humanus (human body louse) PP21000 Pristionchus pacificus (nematode) 207285 Physcomitrella patens (moss) ENSPPYP00000017795 Pongo pygmaeus (orangutan) 53326 Phytophthora ramorum (sudden oak death pathogen) 133404 Phytophthora sojae (root rot pathogen) 596759 Populus trichocarpa (black cottonwood) ENSPTRP00000029693 Pan troglodytes (chimpanzee) PVX_114255 Plasmodium vivax (protozoal parasite) ENSRNOP00000025284 Rattus norvegicus (norway rat) 4744687 Sorghum bicolor (sorghum) 5058075 Sorghum bicolor (sorghum) YPL160W Saccharomyces cerevisiae (budding yeast) Smp_194160 Schistosoma mansoni (trematode parasite) SPAC26F1.13c Schizosaccharomyces pombe (fission yeast) 61696 Trichoplax adhaerens (metazoa) TA10995 Theileria annulata (apicomplexan parasite) XP_975388.1 Tribolium castaneum (red flour beetle) Tc00.1047053511049.40 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000021380 Tetraodon nigroviridis (green spotted pufferfish) TP04_0592 Theileria parva (parasitic protozoan) 39979 Thalassiosira pseudonana (marine diatom) ENSTRUP00000012863 Takifugu rubripes (pufferfish Takifugu) 3731.m00029 Tetrahymena thermophila (ciliate protozoa) 91798.m00118 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000004955 Xenopus tropicalis (frog) YALI0E24607g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV18633 LH21987 ISCW017581 FBgn0232442 FBgn0216678 FBgn0204769 FBgn0194145 FBgn0173050 JGI_V11_300874 FBgn0077313 FBgn0157072 FBgn0140515 FBgn0120672 FBgn0116563 FBgn0091694 CPIJ007075 BGIBMGA001037 ACYPI005219 GB17550 AGAP008297 AAEL006415 PB23917 PHUM103090 PHUM397580 GLEAN_08372
Stocks & Reagents
Stocks Listed in FlyBase ( 9 )
Bloomington	10302 w1118; PBac{PB}CG33123c00827/CyO 11211 w1118; PBac{PB}CG33123c03210/CyO 34483 y1 sc* v1; P{TRiP.HMS01335}attP2/TM3, Sb1 29479 w*; P{lacW}CG33123SH0501 P{neoFRT}40A, l(2)SH0501SH0501
Harvard	- PBac{PB}CG33123c00827 - PBac{PB}CG33123c03210
VDRC	v108303 P{KK102387}VIE-260B v34498 w1118; P{GD10844}v34498 v34499 w1118; P{GD10844}v34499
Genomic Clones ( 2 )
	BACR03G07 BACR26A07 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 56 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	SD07726
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT03563 AT26852 GM29418 LD39176 LP04148 RE03302 RE36803 RE65747 RE68791 SD04907 SD08228 SD10760 SD12507
Other clones	bs74d05 Dmel_dig_009034_0705_3014 Dmel_dig_018404_0586_1251 Dmel_dig_018541_0717_1611 Dmel_neb_001308_0588_3643 Dmel_neb_014339_0583_1277 EC051418 EC051421 EC051471 EC052411 EC053435 EC053436 EC053475 EC053890 EC054922 EC054958 EC056270 EK156015 EK307037 RP003023603 RP003095058 RP003177742 RP003179893 RP003181782 RP003215514 RP003236415 RP003242653 RP003254596 RP003275175 RP003282672 RP003306627 RP003310085 RP003311381 RP003333667 RP003333746 RP003389397 RP003394728 RP003398542 RP003401035 RP003443370 RP003610895 RP003633856
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0053123 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 326262
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG3229 anon-EST:Posey266 (Bayraktaroglu, 2000.11.2)
Additional comments	Annotation CG3229 split into CG31954, CG33123 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_175954 RefSeq (Proteins) • NP_787968 DDBJ / EMBL / GenBank • AAF51096 AAM50317 AF083318 AI534724 AW944523 AY119663 CZ466745 CZ468495 Entrez Gene - A searchable database of RefSeq genes. • 326262 UniProtKB/TrEMBL • Q8MRF8 Q9VQR8
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Aminoacyl-tRNA synthetase, class I, conserved site (IPR001412) Aminoacyl-tRNA synthetase, class Ia (IPR002300) Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic (IPR004493) Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing domain (IPR009008) Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (IPR009080) Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (IPR013155) Rossmann-like alpha/beta/alpha sandwich fold (IPR014729) Aminoacyl-tRNA synthetase, class I (M) (IPR015413)
Linkouts
	BioGRID - A database of protein and genetic interactions • 77512 DroID - A comprehensive database of gene and protein interactions. • FBgn0053123 DRSC - Results from RNAi screens. • FBgn0053123 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0053123 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG33123-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0053123 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 326262 InParanoid A subset of ortholog calls from InParanoid. • AAEL006415-PA Aedes aegypti (mosquito) AGAP008297-PA Anopheles gambiae (mosquito) XP_395743.2 Apis mellifera (honey bee) XP_001944432.1 Acyrthosiphon pisum (pea aphid) At1g09620.1 Arabidopsis thaliana (wall cress) 15609 Batrachochytrium dendrobatidis (chytrid fungus) 63907 Branchiostoma floridae (lancelet) XP_001896500.1 Brugia malayi (roundworm nematode) BGIBMGA001037-PA Bombyx mori (silk worm) ENSBTAP00000008902 Bos taurus (bovine) CAL0002497 Candida albicans (a form of yeast) CN29756 Caenorhabditis brenneri (small nematode) CBP29083 Caenorhabditis briggsae (nematode) CE16317 Caenorhabditis elegans (worm) ENSCAFP00000009651 Canis familiaris (dog) CAGL0J03652g Candida glabrata (haploid yeast) ENSCINP00000017407 Ciona intestinalis (sea squirt) JA05234 Caenorhabditis japonica (nematode) CMQ336C Cyanidioschyzon merolae (red alga) cn13118 Cryptococcus neoformans (yeast-like fungus) CPIJ007075 Culex pipens (mosquito) ENSCPOP00000011092 Cavia porcellus (guinea pig) RP36786 Caenorhabditis remanei (nematode) ENSCSAVP00000015407 Ciona savignyi (sedentary tunicate) 170431 Capitella spl (polychaete worm) DDB0231253 Dictyostelium discoideum (amoeba) DEHA2F07414g Debaryomyces Hansenii (yeast) 300874 Daphnia pulex (daphnia) ENSDARP00000003359 Danio rerio (zebra fish) ENSECAP00000007796 Equus caballus (horse) XP_649157 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000027395 Gymnopilus aculeatus (mushroom) ENSGALP00000012100 Gallus gallus (chicken) GL50803_8621 Giardia lamblia (flagellated protozoan) 157396 Hypsipyla robusta (cedar shoot borer) ENSP00000377954 Homo sapiens (human) ISCW017581-PA Ixodes scapularis (deer tick) KLLA0D06105g Kluyveromyces lactis (yeast) 209438 Lottia gigantea (owl limpet) LmjF13.1100 Leishmania major (virus) 20503 Monocosta brevicollis (choanoflagellate) ENSMODP00000031481 Monodelphis domestica (gray opossum) ENSMUSP00000095197 Mus musculus (house mouse) ENSOANP00000009171 Ornithorynchus anatinus (platypus) ENSORLP00000002016 Oryzias latipes (japanese killifish) LOC_Os09g21110.1 Oryza sativa (asian rice) 10601 Ostreococcus tauri (green alga) PFF1095w Plasmodium falciparum (protozoal parasite) PHUM001141-PA Pediculus humanus (human body louse) PP21000 Pristionchus pacificus (nematode) 207285 Physcomitrella patens (moss) ENSPPYP00000017795 Pongo pygmaeus (orangutan) 53326 Phytophthora ramorum (sudden oak death pathogen) 133404 Phytophthora sojae (root rot pathogen) 596759 Populus trichocarpa (black cottonwood) ENSPTRP00000029693 Pan troglodytes (chimpanzee) PVX_114255 Plasmodium vivax (protozoal parasite) ENSRNOP00000025284 Rattus norvegicus (norway rat) 4744687 Sorghum bicolor (sorghum) 5058075 Sorghum bicolor (sorghum) YPL160W Saccharomyces cerevisiae (budding yeast) Smp_194160 Schistosoma mansoni (trematode parasite) SPAC26F1.13c Schizosaccharomyces pombe (fission yeast) 61696 Trichoplax adhaerens (metazoa) TA10995 Theileria annulata (apicomplexan parasite) XP_975388.1 Tribolium castaneum (red flour beetle) Tc00.1047053511049.40 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000021380 Tetraodon nigroviridis (green spotted pufferfish) TP04_0592 Theileria parva (parasitic protozoan) 39979 Thalassiosira pseudonana (marine diatom) ENSTRUP00000012863 Takifugu rubripes (pufferfish Takifugu) 3731.m00029 Tetrahymena thermophila (ciliate protozoa) 91798.m00118 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000004955 Xenopus tropicalis (frog) YALI0E24607g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 326262 modMine - Data generated by the modENCODE project. • FBgn0053123 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV18633 LH21987 ISCW017581 FBgn0232442 FBgn0216678 FBgn0204769 FBgn0194145 FBgn0173050 JGI_V11_300874 FBgn0077313 FBgn0157072 FBgn0140515 FBgn0120672 FBgn0116563 FBgn0091694 CPIJ007075 BGIBMGA001037 ACYPI005219 GB17550 AGAP008297 AAEL006415 PB23917 PHUM103090 PHUM397580 GLEAN_08372
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	anon-EST:Posey266   CG3229 (Fulton et al., 2001, Hughes et al., 2008) CG33123 (Stuart et al., 2007, Keleman et al., 2009.8.5, Hughes et al., 2008, Campos et al., 2010, Ni et al., 2010.12.1, Neumüller et al., 2011)
Name Synonym
Secondary FlyBase IDs
	FBgn0025535 FBgn0031543
References ( 24 )
Generate a list of	All references relating to this gene ( 24 )
List References by type	Research paper  ( 6 ) Supplementary material  ( 4 ) Personal communication to FlyBase  ( 6 ) FlyBase analysis  ( 3 ) Computer file  ( 3 ) Automatic genome annotation  ( 1 )
Recent research papers ( 3 )
	Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593 Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi. [FBrf0213621] Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Campos et al., 2010, Genetics 184(1): 129--140 Genetic screen in Drosophila melanogaster uncovers a novel set of genes required for embryonic epithelial repair. [FBrf0209682] Show all research papers ...