A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\dp

General Information
SymbolDmel\dpSpeciesD. melanogaster
NamedumpyAnnotation symbolCG33196
Feature typeprotein_coding_geneFlyBase IDFBgn0053196
Created / Updated2004-08-10/2004-08-10
Genomic Location
Chromosome (arm)2LRecombination map2-13.0
Cytogenetic map24F4-25A1Sequence location2L:4,479,471..4,591,963 [-]
Map ( GBrowse ) detailed view
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Automatically generated summary

See sections below for more information
The gene dumpy is referred to in FlyBase by the symbol dp (CG33196, FBgn0053196). It has the cytological map location 24F4-25A1. Its sequence location is 2L:4479471..4591963. Its molecular function is described as: electron carrier activity; endonuclease activity; zinc ion binding; 4 iron, 4 sulfur cluster binding; calcium ion binding; serine-type endopeptidase inhibitor activity. It is involved in the biological processes: chitin-based embryonic cuticle biosynthetic process; chitin-based cuticle attachment to epithelium; apposition of dorsal and ventral imaginal disc-derived wing surfaces; open tracheal system development. 268 alleles are reported. The phenotypes of these alleles are annotated with 20 unique terms, many of which group under: adult segment; organ system; embryonic/larval tracheal system; adult mesothoracic segment; adult; thoracic segment; tracheal system; peripheral nervous system; nervous system; adult tracheal system; lateral trunk posterior branch. It has one annotated transcript and one annotated polypeptide.

hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
dp: dumpy
thumb
dpo: dumpy-oblique
From Bridges and Brehme, 1944, Carnegie Inst. Washington Publ. No. 552: 65.
thumb
dpov: dumpy-oblique vortex
Edith Wallace, unpublished.
dp alleles have variable effects on wing length and shape and on the thoracic cuticle. Presence of wing phenotype indicated by o = oblique in the allelic designation and of thoracic phenotype by v = vortex or cm = comma. The wing effect is an oblique truncation affecting the margins of the first and second posterior cells in weak alleles and reducing wings to approximately half normal length in extreme genotypes, where the truncation is more nearly perpendicular to the long axis of wing. Margins remain intact; angle between veins L2 and L5 increased, and intercrossvein distance decreased. Phenotype resembles rudimentary. Thoracic phenotype comprises five types of hypodermal irregularities: first vortices, second vortices, commas, pre-episternal pits, and posterior invagination; all five have the form of pits, eruptions, or raised pits of the cuticle (Metcalfe, 1970, Genetics 65: 627-54). First vortices are hypodermal pits or eruptions located posterolaterally on the scutum; they disrupt the acrostichal rows, resulting in surrounding whorls of microchaete. Second vortices are located anterolaterally on the scutum and resemble first vortices morphologically. Commas are comma-shaped depressions at the anterior margin of the scutum. The pre-episternal pit is in the pre-episternal plate immediately anterior to the sternopleural chaetae, which sometimes exhibit disturbed orientation (Metcalf, 1969, DIS 44: 91). The posterior invagination occurs between the laterotergite plate and the metanotum (Metcalf, 1969); different alleles exhibit different combinations of these traits. Musculature attached to disturbed regions of the cuticle often degenerates (Metcalfe, 1970). Some alleles show reduced body size and small weak legs (dph, dpobw females, dpolv/dpov). Phenotypic expression enhanced by increased temperature during development; wing and thorax effects show dominance when heterozygotes exposed to increased temperatures at 12-16 and 8-10 hr of pupal life, respectively (Blanc and Child, 1940, Physiol. Zool. 13: 65-72). Normal larvae fed 6-azauracil produce adults with oblique phenocopies; 6-azauracil feeding suppresses dp (Rizki and Rizki, 1965, Science 150: 222-23), su(r) enhances the oblique phenotype (Stroman, 1974, Hereditas 78: 157-68). The four genotypes studied [dpo2, dpovN, dpv2, and dpv; e(dpv)] show increased orotate phosphoribosyl transferase activity during third larval instar and enhanced incorportion of labeled glucose into chitin (Blass and Hunt, 1980, Mol. Gen. Genet. 178: 437-42). Many alleles are lethal when homozygous; they are identified by l in the allelic designation. Lethal stages vary among alleles, e.g., dpolv is embryonic lethal; dplv1, and dplvI die at the egg-larval boundary; dplm homozygotes die primarily at larval ecdysis between the first and second larval instar with some death at hatching and at ecdysis of second-instar larvae; dpobm homozygotes die mostly at hatching but a few die during first and second larval instars (Metcalfe, 1971, Genet. Res. 17: 173-83). In Me/+ heterozygotes, many dp alleles show a dominant oblique effect when heterozygous for dp+ and dp; dpv is an exception (Carlson, 1959). dpv homozygotes normal; show thoracic phenotype only if third chromosomes homozygous for e(dpv).
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
24F4-25A1  
Limits computationally determined from genome sequence between P{lacW}Tps1k08903&P{EP}morgueEP1184 and P{lacW}l(2)k10004k10004&P{EP}CG3036EP963  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
25A1-25A2
24F-25A
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\dp for information on other features
detailed view FBtr0077444 FBtr0290006 FBpp0288445 FBpp0077134 FBti0043578 FBti0076344 FBti0045783 FBti0064837 FBti0018091
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0290006
 
  69439
  22971
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
dp-PC  
FBpp0288445  
2446.0  
22971  
4.91  
 
 
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
PDB - Protein Data Bank. An information portal to biological macromolecular structures
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
    UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data
    Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
      Marker for
        Subcellular Localization
        CV Term
        hide Microarray Data
        Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)
        Untitled Document detailed view FBtr0077444 FBtr0290006
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        FlyExpress - Embryonic expression images (BDGP data)
        hide Alleles & Phenotypes
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        Lethality
        Allele
        Other Phenotypes
        Allele
        Sterility
        Allele
        Phenotype manifest in
        Allele