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Gene Dmel\CG33229

General Information
Symbol	Dmel\CG33229	Species	D. melanogaster
Name		Annotation symbol	CG33229
Feature type	protein_coding_gene	FlyBase ID	FBgn0053229
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	61B2-61B2	Sequence location	3L:224,106..225,605 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG33229 (FBgn0053229). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 5 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult Malpighian tubules, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1624535_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG33229. Gene sequence location is 3L:224106..225605.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 61B2-61B2   Limits computationally determined from genome sequence between P{PZ}trh10512 and P{EP}EP3104EP3104 61B2
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG33229 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.40 Gene model reviewed during 5.44
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG33229-RA FBtr0072499  NM_206223   1500   167
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG33229-PA   FBpp0072401   18.6   167   8.34     NP_995945   AAF47358
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA392340   AA540616   AA940706   AA942238   AE014296 AAF47358   AI296137   AI387095   AI405357   AI542079   AI542867   AQ073034   AW942560   AY061287 AAL28835   BE978780   BI169018   BI241911   BI574392   BI584318   BI586386   BI635902   BP554225   BT126006   BZ286404   CA805553   CK132131   CK132229   CO152877   CO179034   CO182161   CO189826   CO262911   CO277829   CO281473   CO283119   CO285023   CO292761   CO294013   CO306834   CO310610   CO312117   CO316538   CO333005   CO340002   CO340531   EC063939   EC085815   EC216675   EC224156   EC226321   EC233931   EC248009   EC249850   EC259280   EC260279   EC260801   EC261159   ES693783   ES695257   EV577908   EV585828   GH747685   GH749545   GH749735   GH751013   GH751399   GH755337   GH756297   GH759443   GH760181   GH763145   GH765056   GH767407   GH770552   GH779009   GH780362   GH780461   GH781765   GH781863   GH782048   GH784256   GH784787   GH786987   GH788055   GH788065   GH788793   GH789349   GH789350   GH791473   GH793042   GH793052   GH795176   GH795381   GH796170   GH796177   GH799616   GH800224   GH800281   GH800650   GH800914   GH801313   GH801465   GH802300   GH802587   GH803485   GH804987   GH805512   GH808813   GH809059   GH809299   GH809506   GH809990   GH812162   GH812242   GH814684   GH814819   GH816903   GH817291   GH818195   GH819285   GH819450   GH820829   GH821741   GH823290   GH825973   GH828675   GH829722   GH830237   GH830379   GH831971   GH832322   GH832341   GH834516   GH836617   GH837856   GH837942   GH838502   GH839174   GH839207   GH842675   GH843242   GH844692   GH845458   GH845609   GH846935   GH847022   GH847325   GH848759   GH849214   GH854573   GH855104   GH856719   GH859273   GH859945   GH860800   GH862525   GH862637   GH863729   GH863960   GH866384   GH867652   GH868126   GH874328   GH874498   GH876280   GH876443   GH880241   GH883355   GH883418   GH883458   GH883781   GH884740   GH885599   GH886488   GH886831   GH887074   GH888950   GH889872   GH891652   GH891671   GH893322   GH893984   GH894096   GH895127   GH895919   GH896210   GH896287   GH896361   GH896514   GH897334   GH898566   GH898966   GH899016   GH902267   GH903515   GH903688   GH904137   GH907386   GH907902   GH910181   GH910195   GH910762   GH911770   GH912419   GH912486   GH912837   GH913133   GH914148   GH917322   GH917845   GH920170   GH920245   GH920564   GH921772   GH922341   GH925787   GH927848   GH931863   GH933779   GH934197   GH934866   GH934889   GH935835   GH937274   GH937913   GH938391   GH938626   GH938770
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q95RM0
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) yolk nucleus   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | faint & ubiquitous   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | faint & ubiquitous   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   organism | faint & ubiquitous   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult Malpighian tubules, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    378.15 Larval Midgut    118.5 Larval Hindgut    208.2 Larval Malpighian Tubules    323.6 Larval Fat Body    266 Larval Salivary Gland    291.2 Larval Trachea    245.35 Larval Carcass    313.9 Adult Head    119.8 Adult Eye    138.475 Adult Brain    185.2 Adult Thoracic-Abdominal Ganglion    129.9 Adult Crop    462.9 Adult Midgut    156.8 Adult Hindgut    296.5 Adult Malpighian Tubules    502.2 Adult Fat Body    133.8 Adult Salivary Gland    363.4 Adult Heart    169.725 Adult VirginFemale Spermatheca    264.3 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    830.9 Adult Testis    25.5 Adult Male Accessory Gland    178.5 Adult Carcass    178 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    378.15 Larval Midgut    118.5 Larval Hindgut    208.2 Larval Malpighian Tubules    323.6 Larval Fat Body    266 Larval Salivary Gland    291.2 Larval Trachea    245.35 Larval Carcass    313.9 Adult Head    119.8 Adult Eye    138.475 Adult Brain    185.2 Adult Thoracic-Abdominal Ganglion    129.9 Adult Crop    462.9 Adult Midgut    156.8 Adult Hindgut    296.5 Adult Malpighian Tubules  502.2 Adult Fat Body    133.8 Adult Salivary Gland    363.4 Adult Heart    169.725 Adult VirginFemale Spermatheca    264.3 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary  (830.9) Adult Testis    25.5 Adult Male Accessory Gland    178.5 Adult Carcass    178 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    378.15 Larval Midgut    118.5 Larval Hindgut    208.2 Larval Malpighian Tubules    323.6 Larval Fat Body    266 Larval Salivary Gland    291.2 Larval Trachea    245.35 Larval Carcass    313.9 Adult Head    119.8 Adult Eye    138.475 Adult Brain    185.2 Adult Thoracic-Abdominal Ganglion    129.9 Adult Crop    462.9 Adult Midgut    156.8 Adult Hindgut    296.5 Adult Malpighian Tubules    502.2 Adult Fat Body    133.8 Adult Salivary Gland    363.4 Adult Heart    169.725 Adult VirginFemale Spermatheca    264.3 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    830.9 Adult Testis    25.5 Adult Male Accessory Gland    178.5 Adult Carcass    178 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    378.15 Larval Midgut    118.5 Larval Hindgut    208.2 Larval Malpighian Tubules    323.6 Larval Fat Body    266 Larval Salivary Gland    291.2 Larval Trachea    245.35 Larval Carcass    313.9 Adult Head    119.8 Adult Eye    138.475 Adult Brain    185.2 Adult Thoracic-Abdominal Ganglion    129.9 Adult Crop    462.9 Adult Midgut    156.8 Adult Hindgut    296.5 Adult Malpighian Tubules    502.2 Adult Fat Body    133.8 Adult Salivary Gland    363.4 Adult Heart    169.725 Adult VirginFemale Spermatheca    264.3 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    830.9 Adult Testis    25.5 Adult Male Accessory Gland    178.5 Adult Carcass    178 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    378.15 Larval Midgut    118.5 Larval Hindgut    208.2 Larval Malpighian Tubules    323.6 Larval Fat Body    266 Larval Salivary Gland    291.2 Larval Trachea    245.35 Larval Carcass    313.9 Adult Head    119.8 Adult Eye    138.475 Adult Brain    185.2 Adult Thoracic-Abdominal Ganglion    129.9 Adult Crop    462.9 Adult Midgut    156.8 Adult Hindgut    296.5 Adult Malpighian Tubules    502.2 Adult Fat Body    133.8 Adult Salivary Gland    363.4 Adult Heart    169.725 Adult VirginFemale Spermatheca    264.3 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    830.9 Adult Testis    25.5 Adult Male Accessory Gland    178.5 Adult Carcass    178 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    378.15 Larval Midgut    118.5 Larval Hindgut    208.2 Larval Malpighian Tubules    323.6 Larval Fat Body    266 Larval Salivary Gland    291.2 Larval Trachea    245.35 Larval Carcass    313.9 Adult Head    119.8 Adult Eye    138.475 Adult Brain    185.2 Adult Thoracic-Abdominal Ganglion    129.9 Adult Crop    462.9 Adult Midgut    156.8 Adult Hindgut    296.5 Adult Malpighian Tubules  502.2 Adult Fat Body    133.8 Adult Salivary Gland    363.4 Adult Heart    169.725 Adult VirginFemale Spermatheca    264.3 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary  (830.9) Adult Testis    25.5 Adult Male Accessory Gland    178.5 Adult Carcass    178 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    378.15 Larval Midgut    118.5 Larval Hindgut    208.2 Larval Malpighian Tubules    323.6 Larval Fat Body    266 Larval Salivary Gland    291.2 Larval Trachea    245.35 Larval Carcass    313.9 Adult Head    119.8 Adult Eye    138.475 Adult Brain    185.2 Adult Thoracic-Abdominal Ganglion    129.9 Adult Crop    462.9 Adult Midgut    156.8 Adult Hindgut    296.5 Adult Malpighian Tubules    502.2 Adult Fat Body    133.8 Adult Salivary Gland    363.4 Adult Heart    169.725 Adult VirginFemale Spermatheca    264.3 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    830.9 Adult Testis    25.5 Adult Male Accessory Gland    178.5 Adult Carcass    178 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    378.15 Larval Midgut    118.5 Larval Hindgut    208.2 Larval Malpighian Tubules    323.6 Larval Fat Body    266 Larval Salivary Gland    291.2 Larval Trachea    245.35 Larval Carcass    313.9 Adult Head    119.8 Adult Eye    138.475 Adult Brain    185.2 Adult Thoracic-Abdominal Ganglion    129.9 Adult Crop    462.9 Adult Midgut    156.8 Adult Hindgut    296.5 Adult Malpighian Tubules    502.2 Adult Fat Body    133.8 Adult Salivary Gland    363.4 Adult Heart    169.725 Adult VirginFemale Spermatheca    264.3 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    830.9 Adult Testis    25.5 Adult Male Accessory Gland    178.5 Adult Carcass    178 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    119.8   NA  Eye    138.475   NA  Brain    185.2   378.15  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    129.9   NA  Crop    462.9   118.5  Midgut    156.8   208.2  Hindgut    296.5   323.6  Malpighian Tubules    502.2   266  Fat Body    133.8   291.2  Salivary Gland    363.4   NA  Heart    169.725   245.35  Trachea    NA   NA  VirginFemale Spermatheca    264.3   NA  InseminatedFemale Spermatheca    231.8   NA  Ovary    830.9   NA  Testis    25.5   NA  Male Accessory Gland    178.5   313.9  Carcass    178 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    29 central nervous system, larvae L3    47 central nervous system, pupae P8    40 head, virgin 1-day female    17 head, virgin 4-day female    11 head, virgin 20-day female    15 head, mated 1-day female    12 head, mated 4-day female    13 head, mated 20-day female    12 head, mated 1-day male    24 head, mated 4-day male    18 head, mated 20-day male    18 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    28 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    13 digestive system, 4-day adult    12 digestive system, 20-day adult    11 fat body, larvae L3 wandering    9 fat body, white prepupae    17 fat body, pupae P8    11 carcass, larvae L3 wandering    36 carcass, 1-day adult    19 carcass, 4-day adult    18 carcass, 20-day adult    16 ovary, virgin 4-day female    70 ovary, mated 4-day female    55 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (29) central nervous system, larvae L3  (47) central nervous system, pupae P8  (40) head, virgin 1-day female    17 head, virgin 4-day female    11 head, virgin 20-day female    15 head, mated 1-day female    12 head, mated 4-day female    13 head, mated 20-day female    12 head, mated 1-day male    24 head, mated 4-day male    18 head, mated 20-day male    18 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae  (28) digestive system, larvae L3 wandering    25 digestive system, 1-day adult    13 digestive system, 4-day adult    12 digestive system, 20-day adult    11 fat body, larvae L3 wandering    9 fat body, white prepupae    17 fat body, pupae P8    11 carcass, larvae L3 wandering  (36) carcass, 1-day adult    19 carcass, 4-day adult    18 carcass, 20-day adult    16 ovary, virgin 4-day female  (70) ovary, mated 4-day female  (55) testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    29 central nervous system, larvae L3    47 central nervous system, pupae P8    40 head, virgin 1-day female    17 head, virgin 4-day female    11 head, virgin 20-day female    15 head, mated 1-day female    12 head, mated 4-day female    13 head, mated 20-day female    12 head, mated 1-day male    24 head, mated 4-day male    18 head, mated 20-day male    18 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    28 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    13 digestive system, 4-day adult    12 digestive system, 20-day adult    11 fat body, larvae L3 wandering    9 fat body, white prepupae    17 fat body, pupae P8    11 carcass, larvae L3 wandering    36 carcass, 1-day adult    19 carcass, 4-day adult    18 carcass, 20-day adult    16 ovary, virgin 4-day female    70 ovary, mated 4-day female    55 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    29 central nervous system, larvae L3    47 central nervous system, pupae P8    40 head, virgin 1-day female    17 head, virgin 4-day female    11 head, virgin 20-day female    15 head, mated 1-day female    12 head, mated 4-day female    13 head, mated 20-day female    12 head, mated 1-day male    24 head, mated 4-day male    18 head, mated 20-day male    18 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    28 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    13 digestive system, 4-day adult    12 digestive system, 20-day adult    11 fat body, larvae L3 wandering    9 fat body, white prepupae    17 fat body, pupae P8    11 carcass, larvae L3 wandering    36 carcass, 1-day adult    19 carcass, 4-day adult    18 carcass, 20-day adult    16 ovary, virgin 4-day female    70 ovary, mated 4-day female    55 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    29 central nervous system, larvae L3    47 central nervous system, pupae P8    40 head, virgin 1-day female    17 head, virgin 4-day female    11 head, virgin 20-day female    15 head, mated 1-day female    12 head, mated 4-day female    13 head, mated 20-day female    12 head, mated 1-day male    24 head, mated 4-day male    18 head, mated 20-day male    18 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    28 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    13 digestive system, 4-day adult    12 digestive system, 20-day adult    11 fat body, larvae L3 wandering    9 fat body, white prepupae    17 fat body, pupae P8    11 carcass, larvae L3 wandering    36 carcass, 1-day adult    19 carcass, 4-day adult    18 carcass, 20-day adult    16 ovary, virgin 4-day female    70 ovary, mated 4-day female    55 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  29 central nervous system, larvae L3  (47) central nervous system, pupae P8  (40) head, virgin 1-day female    17 head, virgin 4-day female    11 head, virgin 20-day female    15 head, mated 1-day female    12 head, mated 4-day female    13 head, mated 20-day female    12 head, mated 1-day male    24 head, mated 4-day male    18 head, mated 20-day male    18 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae  28 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    13 digestive system, 4-day adult    12 digestive system, 20-day adult    11 fat body, larvae L3 wandering    9 fat body, white prepupae    17 fat body, pupae P8    11 carcass, larvae L3 wandering  (36) carcass, 1-day adult    19 carcass, 4-day adult    18 carcass, 20-day adult    16 ovary, virgin 4-day female  (70) ovary, mated 4-day female  (55) testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    29 central nervous system, larvae L3    47 central nervous system, pupae P8    40 head, virgin 1-day female    17 head, virgin 4-day female    11 head, virgin 20-day female    15 head, mated 1-day female    12 head, mated 4-day female    13 head, mated 20-day female    12 head, mated 1-day male    24 head, mated 4-day male    18 head, mated 20-day male    18 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    28 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    13 digestive system, 4-day adult    12 digestive system, 20-day adult    11 fat body, larvae L3 wandering    9 fat body, white prepupae    17 fat body, pupae P8    11 carcass, larvae L3 wandering    36 carcass, 1-day adult    19 carcass, 4-day adult    18 carcass, 20-day adult    16 ovary, virgin 4-day female    70 ovary, mated 4-day female    55 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    29 central nervous system, larvae L3    47 central nervous system, pupae P8    40 head, virgin 1-day female    17 head, virgin 4-day female    11 head, virgin 20-day female    15 head, mated 1-day female    12 head, mated 4-day female    13 head, mated 20-day female    12 head, mated 1-day male    24 head, mated 4-day male    18 head, mated 20-day male    18 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    28 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    13 digestive system, 4-day adult    12 digestive system, 20-day adult    11 fat body, larvae L3 wandering    9 fat body, white prepupae    17 fat body, pupae P8    11 carcass, larvae L3 wandering    36 carcass, 1-day adult    19 carcass, 4-day adult    18 carcass, 20-day adult    16 ovary, virgin 4-day female    70 ovary, mated 4-day female    55 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    74 embryo 02-04hr    64 embryo 04-06hr    57 embryo 06-08hr    84 embryo 08-10hr    58 embryo 10-12hr    77 embryo 12-14hr    62 embryo 14-16hr    49 embryo 16-18hr    55 embryo 18-20hr    57 embryo 20-22hr    70 embryo 22-24hr    76 larva L1    33 larva L2    24 larva L3 12hr old    23 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    69 white prepupae new    62 white prepupae 12hr    116 white prepupae 24hr    73 pupae 2d postWPP    56 pupae 3d postWPP    40 pupae 4d postWPP    53 adult male 01day    29 adult male 05day    22 adult male 30day    24 adult female 01day    39 adult female 05day    55 adult female 30day    58 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (74) embryo 02-04hr  (64) embryo 04-06hr  (57) embryo 06-08hr  (84) embryo 08-10hr  (58) embryo 10-12hr  (77) embryo 12-14hr  (62) embryo 14-16hr  (49) embryo 16-18hr  (55) embryo 18-20hr  (57) embryo 20-22hr  (70) embryo 22-24hr  (76) larva L1  (33) larva L2    24 larva L3 12hr old    23 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6  (49) larva L3 puffstage 7-9  (69) white prepupae new  (62) white prepupae 12hr  (116) white prepupae 24hr  (73) pupae 2d postWPP  (56) pupae 3d postWPP  (40) pupae 4d postWPP  (53) adult male 01day  (29) adult male 05day    22 adult male 30day    24 adult female 01day  (39) adult female 05day  (55) adult female 30day  (58) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    74 embryo 02-04hr    64 embryo 04-06hr    57 embryo 06-08hr    84 embryo 08-10hr    58 embryo 10-12hr    77 embryo 12-14hr    62 embryo 14-16hr    49 embryo 16-18hr    55 embryo 18-20hr    57 embryo 20-22hr    70 embryo 22-24hr    76 larva L1    33 larva L2    24 larva L3 12hr old    23 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    69 white prepupae new    62 white prepupae 12hr  (116) white prepupae 24hr    73 pupae 2d postWPP    56 pupae 3d postWPP    40 pupae 4d postWPP    53 adult male 01day    29 adult male 05day    22 adult male 30day    24 adult female 01day    39 adult female 05day    55 adult female 30day    58 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    74 embryo 02-04hr    64 embryo 04-06hr    57 embryo 06-08hr    84 embryo 08-10hr    58 embryo 10-12hr    77 embryo 12-14hr    62 embryo 14-16hr    49 embryo 16-18hr    55 embryo 18-20hr    57 embryo 20-22hr    70 embryo 22-24hr    76 larva L1    33 larva L2    24 larva L3 12hr old    23 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    69 white prepupae new    62 white prepupae 12hr    116 white prepupae 24hr    73 pupae 2d postWPP    56 pupae 3d postWPP    40 pupae 4d postWPP    53 adult male 01day    29 adult male 05day    22 adult male 30day    24 adult female 01day    39 adult female 05day    55 adult female 30day    58 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    74 embryo 02-04hr    64 embryo 04-06hr    57 embryo 06-08hr    84 embryo 08-10hr    58 embryo 10-12hr    77 embryo 12-14hr    62 embryo 14-16hr    49 embryo 16-18hr    55 embryo 18-20hr    57 embryo 20-22hr    70 embryo 22-24hr    76 larva L1    33 larva L2    24 larva L3 12hr old    23 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    69 white prepupae new    62 white prepupae 12hr    116 white prepupae 24hr    73 pupae 2d postWPP    56 pupae 3d postWPP    40 pupae 4d postWPP    53 adult male 01day    29 adult male 05day    22 adult male 30day    24 adult female 01day    39 adult female 05day    55 adult female 30day    58 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (74) embryo 02-04hr  (64) embryo 04-06hr  (57) embryo 06-08hr  (84) embryo 08-10hr  (58) embryo 10-12hr  (77) embryo 12-14hr  (62) embryo 14-16hr  (49) embryo 16-18hr  (55) embryo 18-20hr  (57) embryo 20-22hr  (70) embryo 22-24hr  (76) larva L1  (33) larva L2    24 larva L3 12hr old    23 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6  (49) larva L3 puffstage 7-9  (69) white prepupae new  (62) white prepupae 12hr  (116) white prepupae 24hr  (73) pupae 2d postWPP  (56) pupae 3d postWPP  (40) pupae 4d postWPP  (53) adult male 01day  29 adult male 05day    22 adult male 30day    24 adult female 01day  (39) adult female 05day  (55) adult female 30day  (58) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    74 embryo 02-04hr    64 embryo 04-06hr    57 embryo 06-08hr    84 embryo 08-10hr    58 embryo 10-12hr    77 embryo 12-14hr    62 embryo 14-16hr    49 embryo 16-18hr    55 embryo 18-20hr    57 embryo 20-22hr    70 embryo 22-24hr    76 larva L1    33 larva L2    24 larva L3 12hr old    23 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    69 white prepupae new    62 white prepupae 12hr  116 white prepupae 24hr    73 pupae 2d postWPP    56 pupae 3d postWPP    40 pupae 4d postWPP    53 adult male 01day    29 adult male 05day    22 adult male 30day    24 adult female 01day    39 adult female 05day    55 adult female 30day    58 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    74 embryo 02-04hr    64 embryo 04-06hr    57 embryo 06-08hr    84 embryo 08-10hr    58 embryo 10-12hr    77 embryo 12-14hr    62 embryo 14-16hr    49 embryo 16-18hr    55 embryo 18-20hr    57 embryo 20-22hr    70 embryo 22-24hr    76 larva L1    33 larva L2    24 larva L3 12hr old    23 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    69 white prepupae new    62 white prepupae 12hr    116 white prepupae 24hr    73 pupae 2d postWPP    56 pupae 3d postWPP    40 pupae 4d postWPP    53 adult male 01day    29 adult male 05day    22 adult male 30day    24 adult female 01day    39 adult female 05day    55 adult female 30day    58 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    13 embryonic 1182-4H    32 embryonic GM2    53 embryonic Kc167    30 embryonic S1    17 embryonic S3    30 leg disc CME L1    13 wing disc CME-W2    30 wing disc ML-DmD8    73 wing disc ML-DmD9    8 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    37 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    41 antennal disc ML-DmD20-c5    51 mixed discs ML-DmD4-c1    43 CNS ML-DmBG1-c1    31 CNS ML-DmBG2-c2    19 tumorous blood cells mbn2    16 ovary fGS/OSS    70 ovary OSC    17 ovary OSS    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (58) Schneider line 2 Sg4    13 embryonic 1182-4H  (32) embryonic GM2  (53) embryonic Kc167  (30) embryonic S1    17 embryonic S3  (30) leg disc CME L1    13 wing disc CME-W2  (30) wing disc ML-DmD8  (73) wing disc ML-DmD9    8 wing disc ML-DmD16-c3    20 wing disc ML-DmD21  (37) wing disc ML-DmD32    11 haltere disc ML-DmD17-c3  (29) eye-antennal disc ML-DmD11  (41) antennal disc ML-DmD20-c5  (51) mixed discs ML-DmD4-c1  (43) CNS ML-DmBG1-c1  (31) CNS ML-DmBG2-c2    19 tumorous blood cells mbn2    16 ovary fGS/OSS  (70) ovary OSC    17 ovary OSS  (30) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    13 embryonic 1182-4H    32 embryonic GM2    53 embryonic Kc167    30 embryonic S1    17 embryonic S3    30 leg disc CME L1    13 wing disc CME-W2    30 wing disc ML-DmD8    73 wing disc ML-DmD9    8 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    37 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    41 antennal disc ML-DmD20-c5    51 mixed discs ML-DmD4-c1    43 CNS ML-DmBG1-c1    31 CNS ML-DmBG2-c2    19 tumorous blood cells mbn2    16 ovary fGS/OSS    70 ovary OSC    17 ovary OSS    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    13 embryonic 1182-4H    32 embryonic GM2    53 embryonic Kc167    30 embryonic S1    17 embryonic S3    30 leg disc CME L1    13 wing disc CME-W2    30 wing disc ML-DmD8    73 wing disc ML-DmD9    8 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    37 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    41 antennal disc ML-DmD20-c5    51 mixed discs ML-DmD4-c1    43 CNS ML-DmBG1-c1    31 CNS ML-DmBG2-c2    19 tumorous blood cells mbn2    16 ovary fGS/OSS    70 ovary OSC    17 ovary OSS    30 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    13 embryonic 1182-4H    32 embryonic GM2    53 embryonic Kc167    30 embryonic S1    17 embryonic S3    30 leg disc CME L1    13 wing disc CME-W2    30 wing disc ML-DmD8    73 wing disc ML-DmD9    8 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    37 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    41 antennal disc ML-DmD20-c5    51 mixed discs ML-DmD4-c1    43 CNS ML-DmBG1-c1    31 CNS ML-DmBG2-c2    19 tumorous blood cells mbn2    16 ovary fGS/OSS    70 ovary OSC    17 ovary OSS    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (58) Schneider line 2 Sg4    13 embryonic 1182-4H  32 embryonic GM2  (53) embryonic Kc167  30 embryonic S1    17 embryonic S3  30 leg disc CME L1    13 wing disc CME-W2  30 wing disc ML-DmD8  (73) wing disc ML-DmD9    8 wing disc ML-DmD16-c3    20 wing disc ML-DmD21  (37) wing disc ML-DmD32    11 haltere disc ML-DmD17-c3  29 eye-antennal disc ML-DmD11  (41) antennal disc ML-DmD20-c5  (51) mixed discs ML-DmD4-c1  (43) CNS ML-DmBG1-c1  31 CNS ML-DmBG2-c2    19 tumorous blood cells mbn2    16 ovary fGS/OSS  (70) ovary OSC    17 ovary OSS  30 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    13 embryonic 1182-4H    32 embryonic GM2    53 embryonic Kc167    30 embryonic S1    17 embryonic S3    30 leg disc CME L1    13 wing disc CME-W2    30 wing disc ML-DmD8    73 wing disc ML-DmD9    8 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    37 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    41 antennal disc ML-DmD20-c5    51 mixed discs ML-DmD4-c1    43 CNS ML-DmBG1-c1    31 CNS ML-DmBG2-c2    19 tumorous blood cells mbn2    16 ovary fGS/OSS    70 ovary OSC    17 ovary OSS    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    13 embryonic 1182-4H    32 embryonic GM2    53 embryonic Kc167    30 embryonic S1    17 embryonic S3    30 leg disc CME L1    13 wing disc CME-W2    30 wing disc ML-DmD8    73 wing disc ML-DmD9    8 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    37 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    41 antennal disc ML-DmD20-c5    51 mixed discs ML-DmD4-c1    43 CNS ML-DmBG1-c1    31 CNS ML-DmBG2-c2    19 tumorous blood cells mbn2    16 ovary fGS/OSS    70 ovary OSC    17 ovary OSS    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    14 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    29 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    45 Copper 0.5 mM 12 hrs, larvae L3    16 Copper 15 mM 48 hrs, 4-day adult    33 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    41 Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    38 Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    30 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    17 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    14 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3  (29) Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult  (45) Copper 0.5 mM 12 hrs, larvae L3    16 Copper 15 mM 48 hrs, 4-day adult  (33) Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3  (41) Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (38) Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult  (30) Paraquat 10 mM 48 hrs, 4-day adult  (29) Rotenone 2 μg 12 hrs, larvae L3    17 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    14 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    29 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    45 Copper 0.5 mM 12 hrs, larvae L3    16 Copper 15 mM 48 hrs, 4-day adult    33 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    41 Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    38 Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    30 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    17 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    14 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    29 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    45 Copper 0.5 mM 12 hrs, larvae L3    16 Copper 15 mM 48 hrs, 4-day adult    33 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    41 Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    38 Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    30 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    17 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    14 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    29 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    45 Copper 0.5 mM 12 hrs, larvae L3    16 Copper 15 mM 48 hrs, 4-day adult    33 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    41 Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    38 Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    30 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    17 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    14 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3  29 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult  (45) Copper 0.5 mM 12 hrs, larvae L3    16 Copper 15 mM 48 hrs, 4-day adult  (33) Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3  (41) Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (38) Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult  30 Paraquat 10 mM 48 hrs, 4-day adult  29 Rotenone 2 μg 12 hrs, larvae L3    17 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    14 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    29 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    45 Copper 0.5 mM 12 hrs, larvae L3    16 Copper 15 mM 48 hrs, 4-day adult    33 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    41 Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    38 Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    30 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    17 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    14 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    29 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    45 Copper 0.5 mM 12 hrs, larvae L3    16 Copper 15 mM 48 hrs, 4-day adult    33 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    41 Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    38 Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    30 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    17 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_27
External Data & Images
Linkouts	BDGP expression data • LD20362 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0053229 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG33229-RA;CT37659 FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG33229 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 9-10 Stages(s) 11-12
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG33229GD8595 CG33229GD10915 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 CG33229GD8595 Phenotype manifest in Allele mesothoracic tergum, with Scer\GAL4pnr-MD237 CG33229GD8595
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of CG33229 Class Mutagen Stocks Known lesion CG33229EY00429 P-element activity 1 -- CG33229DG23208 P-element activity 0 -- CG33229EP3581 P-element activity 0 Yes
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG33229 Class Mutagen Stocks Known lesion CG33229GD10915 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG33229GD8595 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel6084 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8595} NA P{GD10915} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}CR42862EP3581 NA P{EPgy2}CR42862EY00429 NA miscellaneous insertions P{wHy}CR42862DG23208 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
	There is no information supporting a biological process, cellular component or molecular function term for this gene. (Based on a review of available data before: 2006)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG33229 - tws anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG33229 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0053229 DroID - A comprehensive database of gene and protein interactions. • FBgn0053229
Orthologs
OrthoDB Orthologs (23) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG698VMJ Dipteran inclusive ortholog search EOG6THW3P Insect inclusive ortholog search EOG63FFTW Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG698VMJ)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG33229     Drosophila simulans   Dsim\GD13558 Y   Drosophila sechellia   Dsec\GM14320 Y   Drosophila erecta   Dere\GG14704 Y   Drosophila yakuba   Dyak\GE21068 Y   Drosophila ananassae   Dana\GF24747 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA28387 Y   Drosophila persimilis   Dper\GL16117 Y   Drosophila willistoni   Dwil\GK11395 Y   Drosophila virilis   Dvir\GJ17444 Y   Drosophila mojavensis   Dmoj\GI13759 Y   Drosophila grimshawi   Dgri\GH19230 Y
Orthologs in non-Drosophila Dipterans (EOG6THW3P)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL004169   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ010622
Orthologs in non-Dipteran Insects (EOG63FFTW)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB45704   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG019533   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH23996   Atta cephalotes Leafcutter ant  Acep\ACEP24628   Camponotus floridanus Florida carpenter ant  Cflo\CFLO11350   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL17170   Linepithema humile Argentine ant  Lhum\LH18762   Solenopsis invicta Red fire ant  Sinv\SINV25269   Bombyx mori Silkmoth  Bmor\BGIBMGA005011
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD13558 Drosophila sechellia Dsec\GM14320 Drosophila erecta Dere\GG14704 Drosophila yakuba Dyak\GE21068 Drosophila ananassae Dana\GF24747 Drosophila pseudoobscura pseudoobscura Dpse\GA28387 Drosophila persimilis Dper\GL16117 Drosophila willistoni Dwil\GK11395 Drosophila virilis Dvir\GJ17444 Drosophila mojavensis Dmoj\GI13759 Drosophila grimshawi Dgri\GH19230
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	14847 w*; P{EPgy2}CR42862EY00429 CG33229EY00429/TM6B, Tb1
VDRC	v26155 w1118 P{GD10915}v26155 v26157 w1118; P{GD10915}v26157 v19075 w1118; P{GD8595}v19075/TM3
Genomic Clones ( 1 )
	BACR11J11 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 221 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD20362
Other clones	DPiM_LD20362 LP09856
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH17528 GH25334 LD11179 LD22835 LD26334 LP09961 LP13413 LP13589 RE09971 RE39112 RH23401 RH23474 RH26328 SD08150 SD09368 SD17438
Other clones	42479 60164 72370 76070 99431 146395 161567 214417.23 214447.4 280605 475304 525717 bs82g09 Dmel_dig_011476_0587_2460 Dmel_dig_014936_0666_3055 EC22189 EK045245 EK058240 EK086816 EK126934 EK157247 EK162302 EK167946 EK200917 EK205415 EK222122 EK227906 EK252532 EK265218 EK305412 EN00639 EP09845 EP10832 ESG0118c.B21_H05 FGM228F12 RP001018843 RP001029866 RP001035101 RP003001719 RP003004884 RP003008906 RP003010467 RP003016995 RP003046391 RP003049519 RP003060974 RP003062424 RP003064994 RP003065696 RP003066291 RP003068606 RP003070378 RP003070708 RP003078742 RP003080849 RP003083881 RP003084774 RP003087204 RP003115657 RP003115660 RP003118211 RP003125337 RP003130465 RP003131759 RP003139707 RP003153183 RP003154722 RP003160035 RP003161979 RP003162864 RP003168866 RP003170254 RP003177248 RP003183390 RP003186285 RP003186871 RP003189810 RP003190272 RP003190989 RP003192783 RP003192897 RP003202179 RP003203725 RP003208991 RP003215240 RP003216101 RP003218883 RP003225703 RP003227271 RP003238229 RP003239641 RP003246434 RP003248903 RP003252191 RP003252596 RP003262727 RP003265379 RP003268416 RP003269303 RP003273367 RP003294812 RP003295773 RP003301974 RP003303291 RP003303297 RP003306530 RP003314497 RP003314759 RP003316018 RP003317341 RP003317360 RP003324424 RP003336955 RP003339323 RP003342900 RP003347698 RP003348809 RP003356814 RP003358566 RP003372018 RP003376754 RP003391992 RP003400009 RP003402429 RP003403616 RP003405543 RP003409551 RP003422722 RP003440764 RP003449256 RP003449365 RP003455979 RP003456647 RP003457191 RP003462580 RP003464316 RP003464518 RP003471516 RP003472240 RP003478910 RP003479734 RP003482843 RP003485814 RP003488466 RP003490963 RP003499840 RP003503114 RP003509678 RP003518035 RP003518100 RP003520277 RP003522192 RP003523772 RP003523812 RP003527137 RP003527632 RP003531019 RP003538105 RP003545751 RP003560251 RP003561418 RP003563541 RP003567405 RP003570731 RP003570775 RP003570851 RP003572949 RP003575306 RP003582746 RP003584547 RP003590400 RP003590581 RP003594712 RP003607703 RP003611258 RP003617219 RP003618831 RP003621498 RP003624884 RP003625814 RP003627726 RP003627816 RP003628636 RP003630675 RP003634406 RP003637310 RP003637693 RP003639450 RP003642496 RP003644538 RP003645227 RP003647013 RP003651171 RP003653897 RP003654850 RP003655222 RP003656524 RP003657157 RP003660668 RP003664175 RP003665524 RP003674703
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0053229 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 2768996
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	The annotation corresponding to CG33229 was erroneously assigned to the CG16971 annotation in release 3.1 of the genome annotation, when it should have been a separate gene. This has been corrected in release 3.2 of the genome annotation so that CG33229 is annotated as a separate gene from CG16971. (FlyBase Genome Annotators, 2004)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_206223 RefSeq (Proteins) • NP_995945 DDBJ / EMBL / GenBank • AA540616 AAF47358 AAL28835 AQ073034 AW942560 AY061287 BZ286404 Entrez Gene - A searchable database of RefSeq genes. • 2768996 UniProtKB/TrEMBL • Q95RM0
Other Crossreferences
	BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD20362
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0053229 DroID - A comprehensive database of gene and protein interactions. • FBgn0053229 DRSC - Results from RNAi screens. • FBgn0053229 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0053229 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG33229-RA;CT37659 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0053229 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 2768996 modMine - Data generated by the modENCODE project. • FBgn0053229
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	CG16971 (Zhang et al., 2011) CG32492   CG33229
Name Synonym
Secondary FlyBase IDs
	FBgn0035114 FBgn0052492
References ( 14 )
Research paper	Zhang et al., 2011, J. Exp. Biol. 214(23): 4021--4029 Divergent transcriptomic responses to repeated and single cold exposures in Drosophila melanogaster. [FBrf0216629]
Supplementary material	Guruharsha et al., 2011, Cell 147(3): Table S3. [FBrf0218395] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Gelbart, 2008.3.31, DG.xml DG.xml [FBrf0204101] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]