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Gene Dmel\Muc30E

General Information
Symbol	Dmel\Muc30E	Species	D. melanogaster
Name	Mucin 30E	Annotation symbol	CG33300
Feature type	protein_coding_gene	FlyBase ID	FBgn0053300
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	30E1-30E1	Sequence location	2L:9,897,820..9,903,128 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Mucin 30E is referred to in FlyBase by the symbol Dmel\Muc30E (CG33300, FBgn0053300). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: extracellular matrix structural constituent. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of no expression detected. Peak expression observed within 12-18 embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1641356_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Muc30E. Gene sequence location is 2L:9897820..9903128.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 30E1-30E1   Limits computationally determined from genome sequence between P{lacW}l(2)k06416k06416&P{lacW}sopk04603 and P{EP}CG5899EP701 30E1
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Muc30E for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	14-aa repeat motif Gene model reviewed during 5.45
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Muc30E-RC FBtr0305657  NM_205954   5253   1702
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Muc30E-PC   FBpp0296937   191.0   1702   10.92     NP_995676   AAS64673
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAS64673   CA806296
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q7KTF6
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    10.1 Larval Midgut    8.4 Larval Hindgut    6.8 Larval Malpighian Tubules    4.5 Larval Fat Body    9.9 Larval Salivary Gland    6.3 Larval Trachea    1.95 Larval Carcass    4.1 Adult Head    5.2 Adult Eye    4.025 Adult Brain    7.6 Adult Thoracic-Abdominal Ganglion    5.4 Adult Crop    7.4 Adult Midgut    6.5 Adult Hindgut    6.6 Adult Malpighian Tubules    6.9 Adult Fat Body    14 Adult Salivary Gland    14.2 Adult Heart    3.35 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    8.5 Adult Ovary    4 Adult Testis    34.6 Adult Male Accessory Gland    6.9 Adult Carcass    3.3 Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    10.1 Larval Midgut    8.4 Larval Hindgut    6.8 Larval Malpighian Tubules    4.5 Larval Fat Body    9.9 Larval Salivary Gland    6.3 Larval Trachea    1.95 Larval Carcass    4.1 Adult Head    5.2 Adult Eye    4.025 Adult Brain    7.6 Adult Thoracic-Abdominal Ganglion    5.4 Adult Crop    7.4 Adult Midgut    6.5 Adult Hindgut    6.6 Adult Malpighian Tubules    6.9 Adult Fat Body    14 Adult Salivary Gland    14.2 Adult Heart    3.35 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    8.5 Adult Ovary    4 Adult Testis    34.6 Adult Male Accessory Gland    6.9 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    10.1 Larval Midgut    8.4 Larval Hindgut    6.8 Larval Malpighian Tubules    4.5 Larval Fat Body    9.9 Larval Salivary Gland    6.3 Larval Trachea    1.95 Larval Carcass    4.1 Adult Head    5.2 Adult Eye    4.025 Adult Brain    7.6 Adult Thoracic-Abdominal Ganglion    5.4 Adult Crop    7.4 Adult Midgut    6.5 Adult Hindgut    6.6 Adult Malpighian Tubules    6.9 Adult Fat Body    14 Adult Salivary Gland    14.2 Adult Heart    3.35 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    8.5 Adult Ovary    4 Adult Testis    34.6 Adult Male Accessory Gland    6.9 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    10.1 Larval Midgut    8.4 Larval Hindgut    6.8 Larval Malpighian Tubules    4.5 Larval Fat Body    9.9 Larval Salivary Gland    6.3 Larval Trachea    1.95 Larval Carcass    4.1 Adult Head    5.2 Adult Eye    4.025 Adult Brain    7.6 Adult Thoracic-Abdominal Ganglion    5.4 Adult Crop    7.4 Adult Midgut    6.5 Adult Hindgut    6.6 Adult Malpighian Tubules    6.9 Adult Fat Body    14 Adult Salivary Gland    14.2 Adult Heart    3.35 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    8.5 Adult Ovary    4 Adult Testis    34.6 Adult Male Accessory Gland    6.9 Adult Carcass    3.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    10.1 Larval Midgut    8.4 Larval Hindgut    6.8 Larval Malpighian Tubules    4.5 Larval Fat Body    9.9 Larval Salivary Gland    6.3 Larval Trachea    1.95 Larval Carcass    4.1 Adult Head    5.2 Adult Eye    4.025 Adult Brain    7.6 Adult Thoracic-Abdominal Ganglion    5.4 Adult Crop    7.4 Adult Midgut    6.5 Adult Hindgut    6.6 Adult Malpighian Tubules    6.9 Adult Fat Body    14 Adult Salivary Gland    14.2 Adult Heart    3.35 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    8.5 Adult Ovary    4 Adult Testis    34.6 Adult Male Accessory Gland    6.9 Adult Carcass    3.3 Expression Level Scale  None   Low  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    10.1 Larval Midgut    8.4 Larval Hindgut    6.8 Larval Malpighian Tubules    4.5 Larval Fat Body    9.9 Larval Salivary Gland    6.3 Larval Trachea    1.95 Larval Carcass    4.1 Adult Head    5.2 Adult Eye    4.025 Adult Brain    7.6 Adult Thoracic-Abdominal Ganglion    5.4 Adult Crop    7.4 Adult Midgut    6.5 Adult Hindgut    6.6 Adult Malpighian Tubules    6.9 Adult Fat Body    14 Adult Salivary Gland    14.2 Adult Heart    3.35 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    8.5 Adult Ovary    4 Adult Testis    34.6 Adult Male Accessory Gland    6.9 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    10.1 Larval Midgut    8.4 Larval Hindgut    6.8 Larval Malpighian Tubules    4.5 Larval Fat Body    9.9 Larval Salivary Gland    6.3 Larval Trachea    1.95 Larval Carcass    4.1 Adult Head    5.2 Adult Eye    4.025 Adult Brain    7.6 Adult Thoracic-Abdominal Ganglion    5.4 Adult Crop    7.4 Adult Midgut    6.5 Adult Hindgut    6.6 Adult Malpighian Tubules    6.9 Adult Fat Body    14 Adult Salivary Gland    14.2 Adult Heart    3.35 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    8.5 Adult Ovary    4 Adult Testis    34.6 Adult Male Accessory Gland    6.9 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    10.1 Larval Midgut    8.4 Larval Hindgut    6.8 Larval Malpighian Tubules    4.5 Larval Fat Body    9.9 Larval Salivary Gland    6.3 Larval Trachea    1.95 Larval Carcass    4.1 Adult Head    5.2 Adult Eye    4.025 Adult Brain    7.6 Adult Thoracic-Abdominal Ganglion    5.4 Adult Crop    7.4 Adult Midgut    6.5 Adult Hindgut    6.6 Adult Malpighian Tubules    6.9 Adult Fat Body    14 Adult Salivary Gland    14.2 Adult Heart    3.35 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    8.5 Adult Ovary    4 Adult Testis    34.6 Adult Male Accessory Gland    6.9 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    5.2   NA  Eye    4.025   NA  Brain    7.6   no informative data  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    5.4   NA  Crop    7.4   8.4  Midgut    6.5   6.8  Hindgut    6.6   4.5  Malpighian Tubules    6.9   9.9  Fat Body    no informative data   6.3  Salivary Gland    no informative data   NA  Heart    3.35   1.95  Trachea    NA   NA  VirginFemale Spermatheca    4.6   NA  InseminatedFemale Spermatheca    8.5   NA  Ovary    4   NA  Testis    34.6   NA  Male Accessory Gland    6.9   4.1  Carcass    3.3 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    71 central nervous system, larvae L3    0 central nervous system, pupae P8    2 head, virgin 1-day female    3 head, virgin 4-day female    5 head, virgin 20-day female    1 head, mated 1-day female    7 head, mated 4-day female    6 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    6 digestive system, 20-day adult    1 fat body, larvae L3 wandering    4 fat body, white prepupae    17 fat body, pupae P8    3 carcass, larvae L3 wandering    1 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    8 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    32 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (71) central nervous system, larvae L3    0 central nervous system, pupae P8    2 head, virgin 1-day female    3 head, virgin 4-day female    5 head, virgin 20-day female    1 head, mated 1-day female    7 head, mated 4-day female    6 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    6 digestive system, 20-day adult    1 fat body, larvae L3 wandering    4 fat body, white prepupae    17 fat body, pupae P8    3 carcass, larvae L3 wandering    1 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    8 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  (32) accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    71 central nervous system, larvae L3    0 central nervous system, pupae P8    2 head, virgin 1-day female    3 head, virgin 4-day female    5 head, virgin 20-day female    1 head, mated 1-day female    7 head, mated 4-day female    6 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    6 digestive system, 20-day adult    1 fat body, larvae L3 wandering    4 fat body, white prepupae    17 fat body, pupae P8    3 carcass, larvae L3 wandering    1 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    8 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    32 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    71 central nervous system, larvae L3    0 central nervous system, pupae P8    2 head, virgin 1-day female    3 head, virgin 4-day female    5 head, virgin 20-day female    1 head, mated 1-day female    7 head, mated 4-day female    6 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    6 digestive system, 20-day adult    1 fat body, larvae L3 wandering    4 fat body, white prepupae    17 fat body, pupae P8    3 carcass, larvae L3 wandering    1 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    8 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    32 accessory gland, mated 4-day male    12 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    71 central nervous system, larvae L3    0 central nervous system, pupae P8    2 head, virgin 1-day female    3 head, virgin 4-day female    5 head, virgin 20-day female    1 head, mated 1-day female    7 head, mated 4-day female    6 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    6 digestive system, 20-day adult    1 fat body, larvae L3 wandering    4 fat body, white prepupae    17 fat body, pupae P8    3 carcass, larvae L3 wandering    1 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    8 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    32 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (71) central nervous system, larvae L3    0 central nervous system, pupae P8    2 head, virgin 1-day female    3 head, virgin 4-day female    5 head, virgin 20-day female    1 head, mated 1-day female    7 head, mated 4-day female    6 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    6 digestive system, 20-day adult    1 fat body, larvae L3 wandering    4 fat body, white prepupae    17 fat body, pupae P8    3 carcass, larvae L3 wandering    1 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    8 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  32 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    71 central nervous system, larvae L3    0 central nervous system, pupae P8    2 head, virgin 1-day female    3 head, virgin 4-day female    5 head, virgin 20-day female    1 head, mated 1-day female    7 head, mated 4-day female    6 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    6 digestive system, 20-day adult    1 fat body, larvae L3 wandering    4 fat body, white prepupae    17 fat body, pupae P8    3 carcass, larvae L3 wandering    1 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    8 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    32 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    71 central nervous system, larvae L3    0 central nervous system, pupae P8    2 head, virgin 1-day female    3 head, virgin 4-day female    5 head, virgin 20-day female    1 head, mated 1-day female    7 head, mated 4-day female    6 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    6 digestive system, 20-day adult    1 fat body, larvae L3 wandering    4 fat body, white prepupae    17 fat body, pupae P8    3 carcass, larvae L3 wandering    1 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    8 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    32 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of no expression detected. Peak expression observed within 12-18 embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    13 embryo 10-12hr    10 embryo 12-14hr    23 embryo 14-16hr    1 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    13 embryo 10-12hr    10 embryo 12-14hr    23 embryo 14-16hr    1 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    13 embryo 10-12hr    10 embryo 12-14hr    23 embryo 14-16hr    1 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    13 embryo 10-12hr    10 embryo 12-14hr    23 embryo 14-16hr    1 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    13 embryo 10-12hr    10 embryo 12-14hr    23 embryo 14-16hr    1 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    13 embryo 10-12hr    10 embryo 12-14hr    23 embryo 14-16hr    1 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    13 embryo 10-12hr    10 embryo 12-14hr    23 embryo 14-16hr    1 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    13 embryo 10-12hr    10 embryo 12-14hr    23 embryo 14-16hr    1 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    1 embryonic 1182-4H    3 embryonic GM2    6 embryonic Kc167    2 embryonic S1    1 embryonic S3    15 leg disc CME L1    1 wing disc CME-W2    85 wing disc ML-DmD8    3 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    3 tumorous blood cells mbn2    3 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    1 embryonic 1182-4H    3 embryonic GM2    6 embryonic Kc167    2 embryonic S1    1 embryonic S3    15 leg disc CME L1    1 wing disc CME-W2  (85) wing disc ML-DmD8    3 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    3 tumorous blood cells mbn2    3 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    1 embryonic 1182-4H    3 embryonic GM2    6 embryonic Kc167    2 embryonic S1    1 embryonic S3    15 leg disc CME L1    1 wing disc CME-W2    85 wing disc ML-DmD8    3 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    3 tumorous blood cells mbn2    3 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    1 embryonic 1182-4H    3 embryonic GM2    6 embryonic Kc167    2 embryonic S1    1 embryonic S3    15 leg disc CME L1    1 wing disc CME-W2    85 wing disc ML-DmD8    3 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    3 tumorous blood cells mbn2    3 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    1 embryonic 1182-4H    3 embryonic GM2    6 embryonic Kc167    2 embryonic S1    1 embryonic S3    15 leg disc CME L1    1 wing disc CME-W2    85 wing disc ML-DmD8    3 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    3 tumorous blood cells mbn2    3 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    1 embryonic 1182-4H    3 embryonic GM2    6 embryonic Kc167    2 embryonic S1    1 embryonic S3    15 leg disc CME L1    1 wing disc CME-W2  (85) wing disc ML-DmD8    3 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    3 tumorous blood cells mbn2    3 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    1 embryonic 1182-4H    3 embryonic GM2    6 embryonic Kc167    2 embryonic S1    1 embryonic S3    15 leg disc CME L1    1 wing disc CME-W2    85 wing disc ML-DmD8    3 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    3 tumorous blood cells mbn2    3 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    1 embryonic 1182-4H    3 embryonic GM2    6 embryonic Kc167    2 embryonic S1    1 embryonic S3    15 leg disc CME L1    1 wing disc CME-W2    85 wing disc ML-DmD8    3 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    3 tumorous blood cells mbn2    3 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    10 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    50 Ethanol 2.5% 3 hrs, larvae L3    6 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    10 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult  (29) Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult  (50) Ethanol 2.5% 3 hrs, larvae L3    6 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    10 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    50 Ethanol 2.5% 3 hrs, larvae L3    6 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    10 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    50 Ethanol 2.5% 3 hrs, larvae L3    6 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    10 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    50 Ethanol 2.5% 3 hrs, larvae L3    6 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    10 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult  29 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult  (50) Ethanol 2.5% 3 hrs, larvae L3    6 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    10 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    50 Ethanol 2.5% 3 hrs, larvae L3    6 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    10 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    50 Ethanol 2.5% 3 hrs, larvae L3    6 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    11 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (Graveley et al., 2011) mE1_20_mRNA_expression_cluster_07
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0053300 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG33300-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Muc30EGD16753 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of Muc30E Class Mutagen Stocks Known lesion Muc30EMI02147 1 --
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Muc30E Class Mutagen Stocks Known lesion Muc30EGD16753 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}Muc30EMI02147 NA
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
	There is no information supporting a biological process term for this gene. (Based on a review of available data before: 2006)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
extracellular matrix structural constituent inferred from sequence model (Syed et al., 2008)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
extracellular matrix inferred from sequence model (Syed et al., 2008)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Muc30E allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0053300 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 2768931
Orthologs
OrthoDB Orthologs (106) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG63XVNQ Dipteran inclusive ortholog search EOG6CVGFT, EOG67H5XX Insect inclusive ortholog search EOG6BP06K, EOG6WM3PG Arthropod inclusive ortholog search EOG6G4F55, EOG6WDBSM Metazoa inclusive ortholog search EOG6GXTDF
Orthologs in Drosophila Species (EOG63XVNQ)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Muc30E     Drosophila melanogaster fruit fly  Dmel\cpo     Drosophila melanogaster fruit fly  Dmel\bun     Drosophila melanogaster fruit fly  Dmel\CG17341     Drosophila melanogaster fruit fly  Dmel\Cp38     Drosophila melanogaster fruit fly  Dmel\Msp-300     Drosophila sechellia   Dsec\GM18533   Y Drosophila sechellia   Dsec\GM10489   Y Drosophila erecta   Dere\GG25057   Y Drosophila yakuba   Dyak\GE11355   Y Drosophila ananassae   Dana\GF20573   Y Drosophila ananassae   Dana\GF22191   Y Drosophila ananassae   Dana\GF20779   Y Drosophila ananassae   Dana\GF17697   Y Drosophila ananassae   Dana\GF22208   Y Drosophila ananassae   Dana\GF20960   Y Drosophila ananassae   Dana\GF19556   Y Drosophila ananassae   Dana\GF21385   Y Drosophila ananassae   Dana\GF19170   Y Drosophila ananassae   Dana\GF14380   Y Drosophila ananassae   Dana\GF24053   Y Drosophila ananassae   Dana\GF17798   Y Drosophila ananassae   Dana\GF18978   Y Drosophila ananassae   Dana\GF15430   Y Drosophila ananassae   Dana\GF21089   Y Drosophila ananassae   Dana\GF15524   Y Drosophila ananassae   Dana\GF14080   Y Drosophila ananassae   Dana\GF14079   Y Drosophila ananassae   Dana\GF20827   Y Drosophila ananassae   Dana\GF15986   Y Drosophila ananassae   Dana\GF24227   Y Drosophila ananassae   Dana\GF14078   Y Drosophila ananassae   Dana\GF15881   Y Drosophila ananassae   Dana\GF21464   Y Drosophila ananassae   Dana\GF14407   Y Drosophila ananassae   Dana\GF15944   Y Drosophila ananassae   Dana\GF24170   Y Drosophila ananassae   Dana\GF13509   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA25710   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA22003   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA26185   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA13749   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA23573   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA15557   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA23873   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA22279   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA14711   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA12197   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA20123   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA18065   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA23398   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA16351   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA20294   Y Drosophila pseudoobscura pseudoobscura   Dpse\vnd   Y Drosophila pseudoobscura pseudoobscura   Dpse\NT1   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA18550   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA11418   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA24977   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA12497   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA22933   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA28175   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA12387   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA28847   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA27758   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA28547   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA22666   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA25805   Y Drosophila persimilis   Dper\GL25646   Y Drosophila persimilis   Dper\GL18597   Y Drosophila persimilis   Dper\GL26397   Y Drosophila persimilis   Dper\GL18808   Y Drosophila persimilis   Dper\GL12588   Y Drosophila persimilis   Dper\GL24956   Y Drosophila persimilis   Dper\GL21380   Y Drosophila persimilis   Dper\NT1   Y Drosophila persimilis   Dper\GL26207   Y Drosophila willistoni   Dwil\GK24497   Y Drosophila virilis   Dvir\GJ18174   Y Drosophila virilis   Dvir\GJ11172   Y Drosophila virilis   Dvir\GJ11165   Y Drosophila mojavensis   Dmoj\GI21377   Y Drosophila grimshawi   Dgri\GH10368   Y
Orthologs in non-Drosophila Dipterans (EOG6CVGFT, EOG67H5XX)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ015328 Y
Orthologs in non-Dipteran Insects (EOG6BP06K, EOG6WM3PG)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB40010 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG003486 Y Atta cephalotes Leafcutter ant  Acep\ACEP22595 Y Atta cephalotes Leafcutter ant  Acep\ACEP12505 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO18111 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27822 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27935 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27073 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL17549 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10494 Y Linepithema humile Argentine ant  Lhum\LH21008 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB12929 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB21565 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB12507 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB12669 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB18288 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB12994 Y Solenopsis invicta Red fire ant  Sinv\SINV16814 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI002064 Y Bombyx mori Silkmoth  Bmor\BGIBMGA010472 Y Pediculus humanus Human body louse  Phum\PHUM347100 Y
Orthologs in non-Insect Arthropods (EOG6G4F55, EOG6WDBSM)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_99613 Y Daphnia pulex Water flea  Dpux\BF7 Y
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
Bloomington	35970 y1 w*; Mi{MIC}Muc30EMI02147
VDRC	v46768 w1118; P{GD16753}v46768
Genomic Clones ( 2 )
	BACR06G16 BACR22H06 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 1 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	ESG012c.E21_H03
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0053300 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 2768931
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Muc30E CG33300 (Syed et al., 2008)
Source for database merge of
Additional comments
Other Comments
	New annotation (CG33300) in release 3.2 of the genome annotation. (FlyBase Genome Annotators, 2004)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_205954 RefSeq (Proteins) • NP_995676 DDBJ / EMBL / GenBank • AAS64673 Entrez Gene - A searchable database of RefSeq genes. • 2768931 UniProtKB/TrEMBL • Q7KTF6
Other Crossreferences
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0053300 DRSC - Results from RNAi screens. • FBgn0053300 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0053300 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG33300-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0053300 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 2768931 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 2768931 modMine - Data generated by the modENCODE project. • FBgn0053300
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	CG33300 (Syed et al., 2008, ) Muc30E (Syed et al., 2008)
Name Synonym	CG33300   Muc30E   Mucin 30E (Syed et al., 2008, )
Secondary FlyBase IDs
References ( 7 )
Research paper	Syed et al., 2008, PLoS ONE 3(8): e3041 A potential role for Drosophila mucins in development and physiology. [FBrf0205867]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Bellen, 2011.5.24, set932.xml set932.xml [FBrf0213718] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398]