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Gene Dmel\CG33635

General Information
Symbol	Dmel\CG33635	Species	D. melanogaster
Name		Annotation symbol	CG33635
Feature type	protein_coding_gene	FlyBase ID	FBgn0053635
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	21B3-21B3	Sequence location	2L:157,836..158,664 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG33635 (FBgn0053635). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: identical protein binding. Based on sequence similarity, it is predicted to be involved in the biological process: Golgi to endosome transport. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Vesicle transport protein, Got1/SFT2-like; Vesicle transport protein, SFT2-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult central nervous system, larval/adult midgut, larval fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male accessory gland. Comments on Affy2 ProbeSet: ProbeSet 1627824_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG33635. Gene sequence location is 2L:157836..158664.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 21B3-21B3
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG33635 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.48 Gene model reviewed during 5.44
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG33635-RA FBtr0091612  NM_001032044   769   199
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG33635-PA   FBpp0090982   21.8   199   9.86     NP_001027215   AAZ66445
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Vesicle transport protein, Got1/SFT2-like (IPR007305) Vesicle transport protein, SFT2-like (IPR011691)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAZ66445   BT030901   BT030945   BT030960   BT032701   CO185310   CO289848   CX309593   CX309594   EC205875   EC242086   EV594966
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q6II06
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult central nervous system, larval/adult midgut, larval fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male accessory gland. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    85.325 Larval Midgut    123.5 Larval Hindgut    74.6 Larval Malpighian Tubules    91.6 Larval Fat Body    110.9 Larval Salivary Gland    305.4 Larval Trachea    107.025 Larval Carcass    80.375 Adult Head    80.9 Adult Eye    156.925 Adult Brain    101.7 Adult Thoracic-Abdominal Ganglion    117.7 Adult Crop    50 Adult Midgut    129.2 Adult Hindgut    62 Adult Malpighian Tubules    43 Adult Fat Body    81.9 Adult Salivary Gland    160.5 Adult Heart    77.875 Adult VirginFemale Spermatheca    74.7 Adult InseminatedFemale Spermatheca    86.3 Adult Ovary    145.4 Adult Testis    32.5 Adult Male Accessory Gland    261.9 Adult Carcass    48.5 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    85.325 Larval Midgut    123.5 Larval Hindgut    74.6 Larval Malpighian Tubules    91.6 Larval Fat Body    110.9 Larval Salivary Gland    305.4 Larval Trachea    107.025 Larval Carcass    80.375 Adult Head    80.9 Adult Eye    156.925 Adult Brain    101.7 Adult Thoracic-Abdominal Ganglion    117.7 Adult Crop    50 Adult Midgut    129.2 Adult Hindgut    62 Adult Malpighian Tubules    43 Adult Fat Body    81.9 Adult Salivary Gland    160.5 Adult Heart    77.875 Adult VirginFemale Spermatheca    74.7 Adult InseminatedFemale Spermatheca    86.3 Adult Ovary    145.4 Adult Testis    32.5 Adult Male Accessory Gland    261.9 Adult Carcass    48.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    85.325 Larval Midgut    123.5 Larval Hindgut    74.6 Larval Malpighian Tubules    91.6 Larval Fat Body    110.9 Larval Salivary Gland    305.4 Larval Trachea    107.025 Larval Carcass    80.375 Adult Head    80.9 Adult Eye    156.925 Adult Brain    101.7 Adult Thoracic-Abdominal Ganglion    117.7 Adult Crop    50 Adult Midgut    129.2 Adult Hindgut    62 Adult Malpighian Tubules    43 Adult Fat Body    81.9 Adult Salivary Gland    160.5 Adult Heart    77.875 Adult VirginFemale Spermatheca    74.7 Adult InseminatedFemale Spermatheca    86.3 Adult Ovary    145.4 Adult Testis    32.5 Adult Male Accessory Gland    261.9 Adult Carcass    48.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    85.325 Larval Midgut    123.5 Larval Hindgut    74.6 Larval Malpighian Tubules    91.6 Larval Fat Body    110.9 Larval Salivary Gland    305.4 Larval Trachea    107.025 Larval Carcass    80.375 Adult Head    80.9 Adult Eye    156.925 Adult Brain    101.7 Adult Thoracic-Abdominal Ganglion    117.7 Adult Crop    50 Adult Midgut    129.2 Adult Hindgut    62 Adult Malpighian Tubules    43 Adult Fat Body    81.9 Adult Salivary Gland    160.5 Adult Heart    77.875 Adult VirginFemale Spermatheca    74.7 Adult InseminatedFemale Spermatheca    86.3 Adult Ovary    145.4 Adult Testis    32.5 Adult Male Accessory Gland    261.9 Adult Carcass    48.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    85.325 Larval Midgut    123.5 Larval Hindgut    74.6 Larval Malpighian Tubules    91.6 Larval Fat Body    110.9 Larval Salivary Gland    305.4 Larval Trachea    107.025 Larval Carcass    80.375 Adult Head    80.9 Adult Eye    156.925 Adult Brain    101.7 Adult Thoracic-Abdominal Ganglion    117.7 Adult Crop    50 Adult Midgut    129.2 Adult Hindgut    62 Adult Malpighian Tubules    43 Adult Fat Body    81.9 Adult Salivary Gland    160.5 Adult Heart    77.875 Adult VirginFemale Spermatheca    74.7 Adult InseminatedFemale Spermatheca    86.3 Adult Ovary    145.4 Adult Testis    32.5 Adult Male Accessory Gland    261.9 Adult Carcass    48.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    85.325 Larval Midgut    123.5 Larval Hindgut    74.6 Larval Malpighian Tubules    91.6 Larval Fat Body    110.9 Larval Salivary Gland    305.4 Larval Trachea    107.025 Larval Carcass    80.375 Adult Head    80.9 Adult Eye    156.925 Adult Brain    101.7 Adult Thoracic-Abdominal Ganglion    117.7 Adult Crop    50 Adult Midgut    129.2 Adult Hindgut    62 Adult Malpighian Tubules    43 Adult Fat Body    81.9 Adult Salivary Gland    160.5 Adult Heart    77.875 Adult VirginFemale Spermatheca    74.7 Adult InseminatedFemale Spermatheca    86.3 Adult Ovary    145.4 Adult Testis    32.5 Adult Male Accessory Gland    261.9 Adult Carcass    48.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    85.325 Larval Midgut    123.5 Larval Hindgut    74.6 Larval Malpighian Tubules    91.6 Larval Fat Body    110.9 Larval Salivary Gland    305.4 Larval Trachea    107.025 Larval Carcass    80.375 Adult Head    80.9 Adult Eye    156.925 Adult Brain    101.7 Adult Thoracic-Abdominal Ganglion    117.7 Adult Crop    50 Adult Midgut    129.2 Adult Hindgut    62 Adult Malpighian Tubules    43 Adult Fat Body    81.9 Adult Salivary Gland    160.5 Adult Heart    77.875 Adult VirginFemale Spermatheca    74.7 Adult InseminatedFemale Spermatheca    86.3 Adult Ovary    145.4 Adult Testis    32.5 Adult Male Accessory Gland    261.9 Adult Carcass    48.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    85.325 Larval Midgut    123.5 Larval Hindgut    74.6 Larval Malpighian Tubules    91.6 Larval Fat Body    110.9 Larval Salivary Gland    305.4 Larval Trachea    107.025 Larval Carcass    80.375 Adult Head    80.9 Adult Eye    156.925 Adult Brain    101.7 Adult Thoracic-Abdominal Ganglion    117.7 Adult Crop    50 Adult Midgut    129.2 Adult Hindgut    62 Adult Malpighian Tubules    43 Adult Fat Body    81.9 Adult Salivary Gland    160.5 Adult Heart    77.875 Adult VirginFemale Spermatheca    74.7 Adult InseminatedFemale Spermatheca    86.3 Adult Ovary    145.4 Adult Testis    32.5 Adult Male Accessory Gland    261.9 Adult Carcass    48.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    80.9   NA  Eye    156.925   NA  Brain    101.7   85.325  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    117.7   NA  Crop    50   123.5  Midgut    129.2   74.6  Hindgut    62   91.6  Malpighian Tubules    43   110.9  Fat Body    81.9   305.4  Salivary Gland    160.5   NA  Heart    77.875   107.025  Trachea    NA   NA  VirginFemale Spermatheca    74.7   NA  InseminatedFemale Spermatheca    86.3   NA  Ovary    145.4   NA  Testis    32.5   NA  Male Accessory Gland    261.9   80.375  Carcass    48.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    5 central nervous system, larvae L3    3 central nervous system, pupae P8    5 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    4 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    3 head, mated 4-day male    4 head, mated 20-day male    4 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    4 testis, mated 4-day male    4 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    5 central nervous system, larvae L3    3 central nervous system, pupae P8    5 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    4 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    3 head, mated 4-day male    4 head, mated 20-day male    4 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    4 testis, mated 4-day male    4 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    5 central nervous system, larvae L3    3 central nervous system, pupae P8    5 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    4 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    3 head, mated 4-day male    4 head, mated 20-day male    4 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    4 testis, mated 4-day male    4 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    5 central nervous system, larvae L3    3 central nervous system, pupae P8    5 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    4 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    3 head, mated 4-day male    4 head, mated 20-day male    4 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    4 testis, mated 4-day male    4 accessory gland, mated 4-day male    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    5 central nervous system, larvae L3    3 central nervous system, pupae P8    5 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    4 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    3 head, mated 4-day male    4 head, mated 20-day male    4 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    4 testis, mated 4-day male    4 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    5 central nervous system, larvae L3    3 central nervous system, pupae P8    5 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    4 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    3 head, mated 4-day male    4 head, mated 20-day male    4 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    4 testis, mated 4-day male    4 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    5 central nervous system, larvae L3    3 central nervous system, pupae P8    5 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    4 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    3 head, mated 4-day male    4 head, mated 20-day male    4 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    4 testis, mated 4-day male    4 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    5 central nervous system, larvae L3    3 central nervous system, pupae P8    5 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    4 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    3 head, mated 4-day male    4 head, mated 20-day male    4 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    4 testis, mated 4-day male    4 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    10 embryo 02-04hr    7 embryo 04-06hr    9 embryo 06-08hr    6 embryo 08-10hr    7 embryo 10-12hr    6 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    4 larva L1    3 larva L2    6 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    8 white prepupae new    8 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    6 pupae 3d postWPP    3 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    9 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    10 embryo 02-04hr    7 embryo 04-06hr    9 embryo 06-08hr    6 embryo 08-10hr    7 embryo 10-12hr    6 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    4 larva L1    3 larva L2    6 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    8 white prepupae new    8 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    6 pupae 3d postWPP    3 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    9 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    10 embryo 02-04hr    7 embryo 04-06hr    9 embryo 06-08hr    6 embryo 08-10hr    7 embryo 10-12hr    6 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    4 larva L1    3 larva L2    6 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    8 white prepupae new    8 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    6 pupae 3d postWPP    3 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    9 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    10 embryo 02-04hr    7 embryo 04-06hr    9 embryo 06-08hr    6 embryo 08-10hr    7 embryo 10-12hr    6 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    4 larva L1    3 larva L2    6 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    8 white prepupae new    8 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    6 pupae 3d postWPP    3 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    9 adult female 30day    9 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    10 embryo 02-04hr    7 embryo 04-06hr    9 embryo 06-08hr    6 embryo 08-10hr    7 embryo 10-12hr    6 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    4 larva L1    3 larva L2    6 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    8 white prepupae new    8 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    6 pupae 3d postWPP    3 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    9 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    10 embryo 02-04hr    7 embryo 04-06hr    9 embryo 06-08hr    6 embryo 08-10hr    7 embryo 10-12hr    6 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    4 larva L1    3 larva L2    6 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    8 white prepupae new    8 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    6 pupae 3d postWPP    3 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    9 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    10 embryo 02-04hr    7 embryo 04-06hr    9 embryo 06-08hr    6 embryo 08-10hr    7 embryo 10-12hr    6 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    4 larva L1    3 larva L2    6 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    8 white prepupae new    8 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    6 pupae 3d postWPP    3 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    9 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    10 embryo 02-04hr    7 embryo 04-06hr    9 embryo 06-08hr    6 embryo 08-10hr    7 embryo 10-12hr    6 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    4 larva L1    3 larva L2    6 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    8 white prepupae new    8 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    6 pupae 3d postWPP    3 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    9 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    12 embryonic 1182-4H    3 embryonic GM2    11 embryonic Kc167    17 embryonic S1    11 embryonic S3    15 leg disc CME L1    8 wing disc CME-W2    19 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    5 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    31 tumorous blood cells mbn2    37 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (28) Schneider line 2 Sg4    12 embryonic 1182-4H    3 embryonic GM2    11 embryonic Kc167    17 embryonic S1    11 embryonic S3    15 leg disc CME L1    8 wing disc CME-W2    19 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    5 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3  26 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2  (31) tumorous blood cells mbn2  (37) ovary fGS/OSS    3 ovary OSC    4 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    12 embryonic 1182-4H    3 embryonic GM2    11 embryonic Kc167    17 embryonic S1    11 embryonic S3    15 leg disc CME L1    8 wing disc CME-W2    19 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    5 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    31 tumorous blood cells mbn2    37 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    12 embryonic 1182-4H    3 embryonic GM2    11 embryonic Kc167    17 embryonic S1    11 embryonic S3    15 leg disc CME L1    8 wing disc CME-W2    19 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    5 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    31 tumorous blood cells mbn2    37 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    12 embryonic 1182-4H    3 embryonic GM2    11 embryonic Kc167    17 embryonic S1    11 embryonic S3    15 leg disc CME L1    8 wing disc CME-W2    19 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    5 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    31 tumorous blood cells mbn2    37 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  28 Schneider line 2 Sg4    12 embryonic 1182-4H    3 embryonic GM2    11 embryonic Kc167    17 embryonic S1    11 embryonic S3    15 leg disc CME L1    8 wing disc CME-W2    19 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    5 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3  26 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2  31 tumorous blood cells mbn2  (37) ovary fGS/OSS    3 ovary OSC    4 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    12 embryonic 1182-4H    3 embryonic GM2    11 embryonic Kc167    17 embryonic S1    11 embryonic S3    15 leg disc CME L1    8 wing disc CME-W2    19 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    5 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    31 tumorous blood cells mbn2    37 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    12 embryonic 1182-4H    3 embryonic GM2    11 embryonic Kc167    17 embryonic S1    11 embryonic S3    15 leg disc CME L1    8 wing disc CME-W2    19 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    4 wing disc ML-DmD21    5 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    31 tumorous blood cells mbn2    37 ovary fGS/OSS    3 ovary OSC    4 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    1 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    1 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    1 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    1 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    1 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    1 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    1 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    1 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_23 mE1_20_mRNA_expression_cluster_06
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0053635 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • HDC00027
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG33635GD16089 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG33635 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG33635 Class Mutagen Stocks Known lesion CG33635GD16089 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD16089} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
identical protein binding inferred from sequence or structural similarity with UniProtKB:P38166 (FlyBase Genome Annotators, 2005)
Biological Process
CV term Evidence References
Golgi to endosome transport inferred from sequence or structural similarity with UniProtKB:P38166 (FlyBase Genome Annotators, 2005)
Cellular Component
CV term Evidence References
Golgi membrane inferred from sequence or structural similarity with UniProtKB:P38166 (FlyBase Genome Annotators, 2005) integral to membrane inferred from electronic annotation with InterPro:IPR011691 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG33635 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0053635 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 3772540
Orthologs
OrthoDB Orthologs (34) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6BP1Z5 Dipteran inclusive ortholog search EOG6PK2J0 Insect inclusive ortholog search EOG6NVXGP Arthropod inclusive ortholog search EOG6K0P4P Metazoa inclusive ortholog search EOG6MD8WK
Orthologs in Drosophila Species (EOG6BP1Z5)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG33635     Drosophila simulans   Dsim\GD22980 Y   Drosophila sechellia   Dsec\GM16692 Y   Drosophila erecta   Dere\GG24673 Y   Drosophila yakuba   Dyak\GE16372 Y   Drosophila ananassae   Dana\GF24537 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA25900 Y   Drosophila persimilis   Dper\GL19288 Y   Drosophila willistoni   Dwil\GK23762 Y   Drosophila virilis   Dvir\GJ17253 Y   Drosophila mojavensis   Dmoj\GI15147 Y   Drosophila grimshawi   Dgri\GH10230 Y
Orthologs in non-Drosophila Dipterans (EOG6PK2J0)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL006010   Anopheles gambiae Malaria mosquito  Agam\AGAP009524   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ014387
Orthologs in non-Dipteran Insects (EOG6NVXGP)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC411493   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG003799   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH10068   Atta cephalotes Leafcutter ant  Acep\ACEP20605   Camponotus floridanus Florida carpenter ant  Cflo\CFLO15707   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14436   Linepithema humile Argentine ant  Lhum\LH17982   Pogonomyrmex barbatus Red harvester ant  Pbar\PB19676   Solenopsis invicta Red fire ant  Sinv\SINV18079   Acyrthosiphon pisum Pea aphid  Apim\ACYPI005889   Tribolium castaneum Red flour beetle  Tcas\TC006720
Orthologs in non-Insect Arthropods (EOG6K0P4P)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_69953   Ixodes scapularis Deer tick  Isca\ISCW017655
Orthologs in non-Arthropod Metazoa (EOG6MD8WK)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\C18E9.10   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_014113gn   Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000014211   Mus musculus House mouse  Mmus\Sft2d3   Rattus norvegicus Norway rat  Rnor\Sft2d3   Homo sapiens Human  Hsap\SFT2D3
Human Orthologs (1)
Gene OMIM HGNC Hsap\SFT2D3
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD22980 Drosophila sechellia Dsec\GM16692 Drosophila erecta Dere\GG24673 Drosophila yakuba Dyak\GE16372 Drosophila ananassae Dana\GF24537 Drosophila pseudoobscura pseudoobscura Dpse\GA25900 Drosophila persimilis Dper\GL19288 Drosophila willistoni Dwil\GK23762 Drosophila virilis Dvir\GJ17253 Drosophila mojavensis Dmoj\GI15147 Drosophila grimshawi Dgri\GH10230
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
VDRC	v48812 w1118; P{GD16089}v48812 v48813 w1118; P{GD16089}v48813/CyO
Genomic Clones ( 1 )
	BACR09J20 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 8 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones	IP19804 IP19904 IP20004 IP20104
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	AM03001 Dmel_neb_015367_0648_2019 EK007931 EK072225
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0053635 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 3772540
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: CG33635 HDC00027 (FlyBase Genome Annotators, 2005)
Source for database merge of
Additional comments
Other Comments
	New annotation (CG33635) in release 4.2 of the genome annotation. (FlyBase Genome Annotators, 2005)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_001032044 RefSeq (Proteins) • NP_001027215 DDBJ / EMBL / GenBank • AAZ66445 CX309593 CX309594 Entrez Gene - A searchable database of RefSeq genes. • 3772540 UniProtKB/TrEMBL • Q6II06
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Vesicle transport protein, Got1/SFT2-like (IPR007305) Vesicle transport protein, SFT2-like (IPR011691)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0053635 DRSC - Results from RNAi screens. • FBgn0053635 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0053635 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • HDC00027 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0053635 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 3772540 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 3772540 modMine - Data generated by the modENCODE project. • FBgn0053635
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	BP1075 (Yandell et al., 2005) CG33635   HDC00027   unnamed (Yandell et al., 2005)
Name Synonym
Secondary FlyBase IDs
References ( 10 )
Research paper	Yandell et al., 2005, Proc. Natl. Acad. Sci. U.S.A. 102(5): 1566--1571 A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome. [FBrf0183655] Hild et al., 2003, Genome Biol. 5(1): R3 An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome. [FBrf0167699]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Yandell et al., 2005, Proc. Natl. Acad. Sci. U.S.A.: Validation of gene predictions in Drosophila melanogaster. Supplementary information for Yandell et al., 2005, Proc. Natl. Acad. Sci. USA 102(5): 1566--1571. [FBrf0183657]
Personal communication to FlyBase	Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
FlyBase analysis	FlyBase Genome Annotators, 2005, Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome. [FBrf0182792]