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Gene Dmel\His2B:CG33878
| General Information | ||||||||
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| Symbol | Dmel\His2B:CG33878 | Species | D. melanogaster | |||||
| Name | His2B:CG33878 | Annotation symbol | CG33878 | |||||
| Feature type | protein_coding_gene | FlyBase ID | FBgn0053878 | |||||
| Gene Model Status | Current | Stock availability | None publicly available | |||||
| Genomic Location | ||||||||
| Chromosome (arm) | 2L | Recombination map | ||||||
| Cytogenetic map | 39E1-39E1 | Sequence location | 2L:21,512,887..21,513,481 [-] | |||||
Genomic Maps  | 
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 Summary Information | ||||||||
| Automatically generated summary
See sections below for more information | The gene His2B:CG33878 is referred to in FlyBase by the symbol Dmel\His2B:CG33878 (CG33878, FBgn0053878). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: DNA binding. Based on sequence similarity, it is predicted to be involved in the biological process: chromatin assembly or disassembly. No alleles are reported. It has one annotated transcript and one annotated polypeptide. Protein features are: Histone H2B; Histone core; Histone-fold. Summary of modENCODE Temporal Expression Profile: No expression detected at any stage of development. CAVEAT: These RNA-Seq temporal profiles depend upon RNA-Seq reads that are uniquely placed in the genome. For this reason, genes such as histones, Stellates and many classes of RNA genes that are present in multiple exact or near exact copies in the genome, expression levels may be reported as much lower than their true values. Summary of FlyAtlas Anatomical Expression Data: No FlyAtlas data available because no Affy2 ProbeSet aligns to an exon of His2B:CG33878. Comments on Affy2 ProbeSet: No relevant information because no Affy2 ProbeSet aligns to an exon of His2B:CG33878. Gene sequence location is 2L:21513064..21513618. | |||||||
| User Contributed Data | ||||||||
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Recent Updates
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| Description |
What does this section display?
This section contains items that were added to this record for each release.
It currently only tracks new links between this FlyBase report and other
FlyBase data classes (e.g. genes, references, stocks) or controlled
vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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| FB2013_03 | ||||||||
| FB2013_02 | ||||||||
| All updates | Click here to see a list of all updates to this record from FB2010_08 and on. | |||||||
| Detailed Mapping Data | ||||||||
| FlyBase Computed Cytological Location | ||||||||
Cytogenetic map Evidence for location 39E1-39E1
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| Experimentally Determined Cytological Location | ||||||||
Cytogenetic map Notes References | ||||||||
| Experimentally Determined Recombination Data | ||||||||
| Location | ||||||||
| Left of (cM) | ||||||||
| Right of (cM) | ||||||||
| Notes | ||||||||
| Gene Model & Products | ||||||||
Please see the
GBrowse view of
Dmel\His2B:CG33878 for information on other features To submit a correction to a
gene model please use the Contact
FlyBase form 
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| Comments on Gene Model | ||||||||
Gene model reviewed during 5.51 | ||||||||
| Transcript Data | ||||||||
| Annotated Transcripts | ||||||||
Name FlyBase ID RefSeq ID Length (nt) Associated CDS
(aa) FBtr0091882
595
123 | ||||||||
| Additional Transcript Data & Comments | ||||||||
| Reported size (kB) | ||||||||
| Comments | ||||||||
| External Data | ||||||||
| Crossreferences | ||||||||
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Polypeptide Data | ||||||||
| Annotated Polypeptides | ||||||||
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein FBpp0091123 13.7 123
11.04 | ||||||||
| Additional Polypeptide Data & Comments | ||||||||
| Reported size (kDa) | ||||||||
| Comments | ||||||||
| External Data | ||||||||
| Linkouts | ||||||||
| Crossreferences | InterPro
domains - A database of protein families, domains, and functional sites
• | |||||||
| Sequences Consistent with the Gene Model
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| DDBJ / EMBL / GenBank | DNA sequence Protein
sequence Name | |||||||
| UniProtKB/Swiss-Prot | ||||||||
| UniProtKB/TrEMBL | ||||||||
| Mapped Features | ||||||||
Mapped Features have been reorganized, please
see this article for details. Additional mapped features and mutations can
be found on GBrowse or related reports. Type Symbol &
Location Additional Notes References | ||||||||
| External Data | ||||||||
| Linkouts | ||||||||
| Crossreferences | ||||||||
| Expression Data | ||||||||
| Transcript Expression | ||||||||
| Additional Descriptive Data | ||||||||
| Marker for | ||||||||
| Subcellular Localization | ||||||||
| CV Term | ||||||||
| Polypeptide Expression | ||||||||
| Additional Descriptive Data | ||||||||
| Marker for | ||||||||
| Subcellular Localization (GO Cellular Component) | ||||||||
CV term References | ||||||||
| Expression Deduced from Reporters | ||||||||
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High-Throughput Expression Data
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| Associated Tools | ||||||||
| Reference |
See Gelbart and Emmert, 2010.10.13
for analysis details and data files for all genes.
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FlyAtlas Anatomy Microarray
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FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
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modENCODE Anatomy RNA-Seq
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modENCODE Development RNA-Seq
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modENCODE Temporal Expression Data (Graveley et al., 2011) | ||||||||
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modENCODE Cell Lines RNA-Seq
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modENCODE Treatments RNA-Seq
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Expression Clusters
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External Data & Images
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| Linkouts | FLIGHT
- Cell culture data for RNAi and other high-throughput technologies
FlyAtlas
- Adult expression by tissue, using Affymetrix Dros2 array
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| Alleles & Phenotypes | ||||||||
| Summary of Allele Phenotypes | ||||||||
Phenotype manifest
in Allele | ||||||||
| Classical Alleles ( 0 ) | ||||||||
| For All Classical Alleles Show | ||||||||
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| Alleles Carried on Transgenic Constructs
( 0 ) | ||||||||
| For All Alleles Carried on Transgenic Constructs Show | ||||||||
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| Aneuploid Aberrations | ||||||||
| Transgenic Constructs & Insertions
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| Transgenic Constructs | ||||||||
Type of
construct Name Expression
data | ||||||||
| Insertions | ||||||||
Type of insertions Name Expression
data | ||||||||
| Gene Ontology: Function, Process
& Cellular Component ( 6 unique terms ) | ||||||||
| Terms Based on
Experimental Evidence ( 0 terms ) | ||||||||
| Terms Based on Predictions or
Assertions ( 6 terms ) | ||||||||
| Molecular Function | ||||||||
CV term References | ||||||||
inferred from sequence or structural similarity with UniProtKB:P02283 inferred from electronic annotation with InterPro:IPR009072 | ||||||||
| Biological Process | ||||||||
CV term References | ||||||||
inferred from sequence or structural similarity with UniProtKB:P02283 inferred from electronic annotation with InterPro:IPR000558 | ||||||||
| Cellular Component | ||||||||
CV term References | ||||||||
inferred from sequence or structural similarity with UniProtKB:P02283 inferred from electronic annotation with InterPro:IPR000558 | ||||||||
| Sequence Ontology: Class of Gene | ||||||||
| Interactions & Pathways | ||||||||
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Summary of Physical Interactions
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| Summary of Genetic Interactions | ||||||||
| Interacts with | Please look at the allele data
for full details of the genetic interactions His2B:CG33878 allele Gene References | |||||||
| External Data | ||||||||
| Linkouts | DroID
- A comprehensive database of gene and protein interactions.
InterologFinder
Protein-protein interactions (PPI) from both known and predicted PPI data sets.
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| Orthologs
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OrthoDB Orthologs (428)
- based on analysis using Dmel annotation version 5.41
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| OrthoDB Ortholog Groups | ||||||||
OrthoDB orthology group searches Drosophila inclusive ortholog search Dipteran inclusive ortholog search Insect inclusive ortholog search Arthropod inclusive ortholog search Metazoa inclusive ortholog search | ||||||||
| Orthologs in Drosophila Species
(EOG6PG6MN)
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Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group | ||||||||
| Orthologs in non-Drosophila Dipterans
(EOG66T3B4)
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Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group | ||||||||
| Orthologs in non-Dipteran Insects
(EOG6TB382)
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Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee Amel\LOC725344 Y Apis mellifera Western honey bee Amel\LOC724633 Y Apis mellifera Western honey bee Amel\GB47505 Y Apis mellifera Western honey bee Amel\LOC724633 Y Nasonia vitripennis Parasitic wasp Nvit\Nasvi2EG008670 Y Nasonia vitripennis Parasitic wasp Nvit\Nasvi2EG004957 Y Nasonia vitripennis Parasitic wasp Nvit\Nasvi2EG004959 Y Nasonia vitripennis Parasitic wasp Nvit\Nasvi2EG005045 Y Acromyrmex echinatior Panamanian leafcutter ant Aech\AECH20549 Y Acromyrmex echinatior Panamanian leafcutter ant Aech\AECH17313 Y Acromyrmex echinatior Panamanian leafcutter ant Aech\AECH13246 Y Acromyrmex echinatior Panamanian leafcutter ant Aech\AECH20547 Y Atta cephalotes Leafcutter ant Acep\ACEP26429 Y Atta cephalotes Leafcutter ant Acep\ACEP26444 Y Atta cephalotes Leafcutter ant Acep\ACEP13007 Y Atta cephalotes Leafcutter ant Acep\ACEP13011 Y Atta cephalotes Leafcutter ant Acep\ACEP26606 Y Camponotus floridanus Florida carpenter ant Cflo\CFLO19771 Y Camponotus floridanus Florida carpenter ant Cflo\CFLO12608 Y Camponotus floridanus Florida carpenter ant Cflo\CFLO19748 Y Camponotus floridanus Florida carpenter ant Cflo\CFLO17581 Y Harpegnathos saltator Jerdons jumping ant Hsal\HSAL21486 Y Harpegnathos saltator Jerdons jumping ant Hsal\HSAL13535 Y Harpegnathos saltator Jerdons jumping ant Hsal\HSAL21650 Y Linepithema humile Argentine ant Lhum\LH25916 Y Linepithema humile Argentine ant Lhum\LH20876 Y Pogonomyrmex barbatus Red harvester ant Pbar\PB15670 Y Pogonomyrmex barbatus Red harvester ant Pbar\PB12154 Y Pogonomyrmex barbatus Red harvester ant Pbar\PB16074 Y Pogonomyrmex barbatus Red harvester ant Pbar\PB15223 Y Pogonomyrmex barbatus Red harvester ant Pbar\PB26549 Y Solenopsis invicta Red fire ant Sinv\SINV16106 Y Solenopsis invicta Red fire ant Sinv\SINV22824 Y Solenopsis invicta Red fire ant Sinv\SINV19572 Y | ||||||||
| Orthologs in non-Insect Arthropods
(EOG61G1N3)
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Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group | ||||||||
| Orthologs in non-Arthropod Metazoa
(EOG6DNT18)
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Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group | ||||||||
| Human Orthologs (18) | ||||||||
Gene OMIM HGNC | ||||||||
| AAA Orthologs (0)
based on analysis using Dmel annotation version 4.3
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No orthologs identified
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| Stocks & Reagents | ||||||||
| Stocks Listed in FlyBase ( 0 ) | ||||||||
| Genomic Clones ( 1 ) | ||||||||
Please Note FlyBase no
longer curates genomic clone accessions so this list
may not be complete | ||||||||
| cDNA Clones ( 15 ) | ||||||||
This section lists
cDNAs and ESTs that fall within the genomic extent
of the gene model, which may include cDNAs and ESTs
of genes within introns, or of overlapping genes.
Please see GBrowse for alignment of the cDNAs and ESTs
to the gene model. | ||||||||
| cDNA Clones, Fully Sequenced | ||||||||
| BDGP DGC clones | ||||||||
| Other clones | ||||||||
| cDNA Clones, End Sequenced (ESTs) | ||||||||
| BDGP DGC clones | ||||||||
| Other clones | ||||||||
| RNAi & Array Information | ||||||||
| Linkouts | DRSC
- Results from RNAi screens.
GenomeRNAi
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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Antibody Information
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| Other Information | ||||||||
| Discoverer | ||||||||
| Etymology | ||||||||
| Identification | ||||||||
| Relationship to Other Genes | ||||||||
| Source for database identity of | ||||||||
| Source for database merge of | ||||||||
| Member gene of | ||||||||
| Additional comments | ||||||||
| Other Comments | ||||||||
New annotation (CG33878) in release 4.2 of the genome annotation. | ||||||||
| External Crossreferences & Linkouts
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| Sequence Crossreferences | ||||||||
RefSeq (Transcripts) RefSeq (Proteins) Entrez Gene
- A searchable database of RefSeq genes.
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| Other Crossreferences | ||||||||
InterPro
domains - A database of protein families, domains, and functional sites
• | ||||||||
| Linkouts | ||||||||
DroID
- A comprehensive database of gene and protein interactions.
DRSC
- Results from RNAi screens.
FLIGHT
- Cell culture data for RNAi and other high-throughput technologies
FlyAtlas
- Adult expression by tissue, using Affymetrix Dros2 array
FlyMine
- Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InterologFinder
Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine
- Data generated by the modENCODE project.
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| Synonyms & Secondary IDs
( 2 ) | ||||||||
| Reported As | ||||||||
| Symbol Synonym | CG33878 His2B:CG33878 | |||||||
| Name Synonym | His2B:CG33878 | |||||||
| Secondary FlyBase IDs | ||||||||
| References ( 3 ) | ||||||||
| Personal communication to FlyBase |
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| FlyBase analysis |
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