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Gene Dmel\CG33970

General Information
Symbol	Dmel\CG33970	Species	D. melanogaster
Name		Annotation symbol	CG33970
Feature type	protein_coding_gene	FlyBase ID	FBgn0053970
Gene Model Status	Current	Stock availability	10 publicly available
Also Known As	CG14559, CG6162, CG6166
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	97A8-97A10	Sequence location	3R:22,144,077..22,187,708 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG33970 (FBgn0053970). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: ATPase activity, coupled to transmembrane movement of substances; transporter activity. Based on sequence similarity, it is predicted to be involved in the biological process: transport. 8 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: AAA+ ATPase domain; ABC transporter, conserved site; ABC transporter-like; ABC-2; ABC-2 type transporter. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of extremely low expression. Peak expression observed within 18-24 hour embryonic stages, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult crop, adult hindgut, adult salivary gland, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult midgut, larval hindgut, larval trachea, adult testis, larval carcass. Gene sequence location is 3R:22144077..22187708.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 97A8-97A10   Limits computationally determined from genome sequence between P{PZ}l(3)rQ197rQ197 and P{lacW}scribj7B3
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG33970 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.49 Gene merge based on EST/cDNA data Low-frequency RNA-Seq exon junction(s) not annotated. Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG33970-RA FBtr0100012  NM_001038982   3387   777 CG33970-RB FBtr0100013  NM_001038981   2072   518
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG33970-PA   FBpp0099384   86.0   777   6.13     NP_001034071   ABC66191 CG33970-PB   FBpp0099385   58.1   518   4.67     NP_001034070   AAF56585
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • ABC-2 (IPR000412) ABC transporter-like (IPR003439) AAA+ ATPase domain (IPR003593) P-loop containing nucleoside triphosphate hydrolase (IPR027417) ABC transporter, conserved site (IPR017871) ABC-2 type transporter (IPR013525)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF56585   AE014297 ABC66191   AI135085   AI135110   AI135111   AI238079   AI520648   AW940532   AY058373 AAL13602   BF491369   BF494692   BI231332   BI369781   BI484690   BI578174   BT003531 AAO39535   CK658330   CO188659   CO274599   CO282186   CO288653   CO292544   CO296252   CO312827   CO318740   CO323504   CO332514   CO343335   EC058735   EC073513   EC075745   EC201124   EC205936   EC218109   EC221804   EC223643   EC238856   EC239751   EC242066   EC243528   EC247721   GH749630   GH750361   GH755574   GH759716   GH777636   GH778750   GH784340   GH786283   GH790218   GH791414   GH808117   GH810221   GH812944   GH815639   GH817524   GH819017   GH819728   GH820358   GH823427   GH824224   GH824305   GH824803   GH825566   GH828420   GH830345   GH830572   GH834727   GH840399   GH841318   GH843601   GH844761   GH845872   GH853780   GH858136   GH861628   GH861914   GH863874   GH881808   GH883010   GH886325   GH888873   GH891805   GH892411   GH897178   GH897337   GH898312   GH898412   GH901102   GH903144   GH904697   GH906372   GH907779   GH908099   GH908533   GH911757   GH915668   GH920158   GH923015   GH925170   GH929483   GH940904
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q86P18 Q9VBF7 Q95U16
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 13 -- 16   embryonic dorsal epidermis   (Fisher et al., 2012) embryonic head epidermis   (Fisher et al., 2012) embryonic ventral epidermis   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult crop, adult hindgut, adult salivary gland, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult midgut, larval hindgut, larval trachea, adult testis, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    13 head, virgin 4-day female    12 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    20 head, mated 4-day male    23 head, mated 20-day male    34 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    24 digestive system, 4-day adult    25 digestive system, 20-day adult    19 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    0 carcass, larvae L3 wandering    17 carcass, 1-day adult    13 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    4 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    13 head, virgin 4-day female    12 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    20 head, mated 4-day male    23 head, mated 20-day male  (34) salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    24 digestive system, 4-day adult    25 digestive system, 20-day adult    19 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    0 carcass, larvae L3 wandering    17 carcass, 1-day adult    13 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    4 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    13 head, virgin 4-day female    12 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    20 head, mated 4-day male    23 head, mated 20-day male    34 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    24 digestive system, 4-day adult    25 digestive system, 20-day adult    19 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    0 carcass, larvae L3 wandering    17 carcass, 1-day adult    13 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    4 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    13 head, virgin 4-day female    12 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    20 head, mated 4-day male    23 head, mated 20-day male    34 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    24 digestive system, 4-day adult    25 digestive system, 20-day adult    19 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    0 carcass, larvae L3 wandering    17 carcass, 1-day adult    13 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    4 accessory gland, mated 4-day male    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    13 head, virgin 4-day female    12 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    20 head, mated 4-day male    23 head, mated 20-day male    34 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    24 digestive system, 4-day adult    25 digestive system, 20-day adult    19 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    0 carcass, larvae L3 wandering    17 carcass, 1-day adult    13 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    4 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    13 head, virgin 4-day female    12 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    20 head, mated 4-day male    23 head, mated 20-day male  (34) salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    24 digestive system, 4-day adult    25 digestive system, 20-day adult    19 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    0 carcass, larvae L3 wandering    17 carcass, 1-day adult    13 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    4 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    13 head, virgin 4-day female    12 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    20 head, mated 4-day male    23 head, mated 20-day male    34 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    24 digestive system, 4-day adult    25 digestive system, 20-day adult    19 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    0 carcass, larvae L3 wandering    17 carcass, 1-day adult    13 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    4 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    13 head, virgin 4-day female    12 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    20 head, mated 4-day male    23 head, mated 20-day male    34 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    24 digestive system, 4-day adult    25 digestive system, 20-day adult    19 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    0 carcass, larvae L3 wandering    17 carcass, 1-day adult    13 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    4 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of extremely low expression. Peak expression observed within 18-24 hour embryonic stages, during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    5 embryo 16-18hr    51 embryo 18-20hr    57 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    4 larva L2    7 larva L3 12hr old    10 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    17 white prepupae new    7 white prepupae 12hr    65 white prepupae 24hr    23 pupae 2d postWPP    10 pupae 3d postWPP    27 pupae 4d postWPP    43 adult male 01day    27 adult male 05day    32 adult male 30day    32 adult female 01day    14 adult female 05day    10 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    5 embryo 16-18hr  (51) embryo 18-20hr  (57) embryo 20-22hr    5 embryo 22-24hr    7 larva L1    4 larva L2    7 larva L3 12hr old    10 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    17 white prepupae new    7 white prepupae 12hr  (65) white prepupae 24hr    23 pupae 2d postWPP    10 pupae 3d postWPP  (27) pupae 4d postWPP  (43) adult male 01day  (27) adult male 05day  (32) adult male 30day  (32) adult female 01day    14 adult female 05day    10 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    5 embryo 16-18hr    51 embryo 18-20hr    57 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    4 larva L2    7 larva L3 12hr old    10 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    17 white prepupae new    7 white prepupae 12hr    65 white prepupae 24hr    23 pupae 2d postWPP    10 pupae 3d postWPP    27 pupae 4d postWPP    43 adult male 01day    27 adult male 05day    32 adult male 30day    32 adult female 01day    14 adult female 05day    10 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    5 embryo 16-18hr    51 embryo 18-20hr    57 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    4 larva L2    7 larva L3 12hr old    10 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    17 white prepupae new    7 white prepupae 12hr    65 white prepupae 24hr    23 pupae 2d postWPP    10 pupae 3d postWPP    27 pupae 4d postWPP    43 adult male 01day    27 adult male 05day    32 adult male 30day    32 adult female 01day    14 adult female 05day    10 adult female 30day    9 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    5 embryo 16-18hr    51 embryo 18-20hr    57 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    4 larva L2    7 larva L3 12hr old    10 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    17 white prepupae new    7 white prepupae 12hr    65 white prepupae 24hr    23 pupae 2d postWPP    10 pupae 3d postWPP    27 pupae 4d postWPP    43 adult male 01day    27 adult male 05day    32 adult male 30day    32 adult female 01day    14 adult female 05day    10 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    5 embryo 16-18hr  (51) embryo 18-20hr  (57) embryo 20-22hr    5 embryo 22-24hr    7 larva L1    4 larva L2    7 larva L3 12hr old    10 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    17 white prepupae new    7 white prepupae 12hr  (65) white prepupae 24hr    23 pupae 2d postWPP    10 pupae 3d postWPP  27 pupae 4d postWPP  (43) adult male 01day  27 adult male 05day  32 adult male 30day  32 adult female 01day    14 adult female 05day    10 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    5 embryo 16-18hr    51 embryo 18-20hr    57 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    4 larva L2    7 larva L3 12hr old    10 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    17 white prepupae new    7 white prepupae 12hr    65 white prepupae 24hr    23 pupae 2d postWPP    10 pupae 3d postWPP    27 pupae 4d postWPP    43 adult male 01day    27 adult male 05day    32 adult male 30day    32 adult female 01day    14 adult female 05day    10 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    5 embryo 16-18hr    51 embryo 18-20hr    57 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    4 larva L2    7 larva L3 12hr old    10 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    17 white prepupae new    7 white prepupae 12hr    65 white prepupae 24hr    23 pupae 2d postWPP    10 pupae 3d postWPP    27 pupae 4d postWPP    43 adult male 01day    27 adult male 05day    32 adult male 30day    32 adult female 01day    14 adult female 05day    10 adult female 30day    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    2 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    2 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    2 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    2 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    7 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    2 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    2 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    2 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    2 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    5 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    11 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    5 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    11 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    5 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    11 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    5 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    11 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    5 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    11 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    5 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    11 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    5 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    11 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    5 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    11 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_18 mE1_20_mRNA_expression_cluster_14
External Data & Images
Linkouts	BDGP expression data • RE14039 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0053970 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG14559-RA;CG31085-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG33970 Stages(s) 4-6 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL4pnr-MD237 CG33970GD297 CG33970GD7619 Phenotype manifest in Allele
Classical Alleles ( 4 )
For All Classical Alleles Show
Allele of CG33970 Class Mutagen Stocks Known lesion CG33970f04675 1 -- CG33970MB00606 1 -- CG33970MI04364 1 -- CG33970MI04415 1 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG33970 Class Mutagen Stocks Known lesion CG33970GD297 in vitro construct - RNAi in vitro construct - regulatory fusion 3 Yes CG33970GD7619 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG33970KK109988 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG33970GD16848 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)BSC512 (Christensen et al., 2008.4.15)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD297} NA P{GD7619} NA P{GD16848} NA P{KK109988} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}CG33970MI04364 NA Mi{MIC}CG33970MI04415 NA PBac{WH}CG33970f04675 NA insertion of enhancer trap binary system Mi{ET1}CG33970MB00606 No
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
ATPase activity, coupled to transmembrane movement of substances inferred from sequence or structural similarity with NCBI:NP_687295 (FlyBase, 1992-) ATP binding inferred from electronic annotation with InterPro:IPR000412, InterPro:IPR003439, InterPro:IPR017871 (FlyBase Curators et al., 2004-) transporter activity inferred from sequence or structural similarity with NCBI:NP_687295 (FlyBase, 1992-)
Biological Process
CV term Evidence References
transport inferred from sequence or structural similarity with NCBI:NP_687295 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
ATP-binding cassette (ABC) transporter complex inferred from sequence or structural similarity with NCBI:NP_687295 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG33970 - ATPsyn-γ anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Acsl anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Arf102F anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Arf79F anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG10077 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG10425 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG11107 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG13220 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG1416 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG14969 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG2064 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG2065 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG31739 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG3523 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG3689 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG3735 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG4169 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG4611 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG4729 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG5482 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) CG33970 - CG6453 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG6701 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG7878 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - CG9947 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Cctγ anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Cdc42 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Cnx99A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Cp1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Cyp6a20 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Dlc90F anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Dp1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Droj2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - EfTuM anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Fatp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Gale anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - ImpL3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Int6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Kap-α3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - KdelR anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - LRP1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Mpcp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Ns1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Pp2A-29B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Rpt1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Rpt4 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - SF1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Sec61α anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Tapδ anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Top1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - U4-U6-60K anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Ugt anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Vap-33-1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Vps13 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Vps4 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - Zn72D anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - eIF3-S8 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - mRpS24 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - sec63 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - spoon anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG33970 - wal anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG33970 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 68083 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0053970 DroID - A comprehensive database of gene and protein interactions. • FBgn0053970 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43186
Orthologs
OrthoDB Orthologs (63) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG63FHGB Dipteran inclusive ortholog search EOG641QKJ Insect inclusive ortholog search EOG6QFV89 Arthropod inclusive ortholog search EOG67M0CZ Metazoa inclusive ortholog search EOG65F8G7
Orthologs in Drosophila Species (EOG63FHGB)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG33970     Drosophila simulans   Dsim\GD21277 Y   Drosophila sechellia   Dsec\GM10317 Y   Drosophila erecta   Dere\GG11472 Y   Drosophila yakuba   Dyak\GE23664 Y   Drosophila ananassae   Dana\GF20731 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA30176     Drosophila persimilis   Dper\GL21842 Y   Drosophila willistoni   Dwil\GK13315 Y   Drosophila virilis   Dvir\GJ23863 Y   Drosophila mojavensis   Dmoj\GI22617 Y   Drosophila grimshawi   Dgri\GH19414 Y
Orthologs in non-Drosophila Dipterans (EOG641QKJ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL005491   Anopheles gambiae Malaria mosquito  Agam\AGAP002638   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012284
Orthologs in non-Dipteran Insects (EOG6QFV89)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB41188 Y Apis mellifera Western honey bee  Amel\GB50101 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG015546 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG001525 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH13903 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH12683 Y Atta cephalotes Leafcutter ant  Acep\ACEP22684 Y Atta cephalotes Leafcutter ant  Acep\ACEP18549 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO19462 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO13143 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12890 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14602 Y Linepithema humile Argentine ant  Lhum\LH18210 Y Linepithema humile Argentine ant  Lhum\LH10671 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB24680 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB22475 Y Solenopsis invicta Red fire ant  Sinv\SINV22994 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI006347 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI006207 Y Bombyx mori Silkmoth  Bmor\BGIBMGA010726 Y Bombyx mori Silkmoth  Bmor\BGIBMGA010761 Y Pediculus humanus Human body louse  Phum\PHUM066540 Y Tribolium castaneum Red flour beetle  Tcas\TC011755 Y Tribolium castaneum Red flour beetle  Tcas\TC012512 Y
Orthologs in non-Insect Arthropods (EOG67M0CZ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_332183 Y Daphnia pulex Water flea  Dpux\ihh Y Daphnia pulex Water flea  Dpux\JGI_V11_328127 Y Daphnia pulex Water flea  Dpux\COI Y Daphnia pulex Water flea  Dpux\JGI_V11_347474 Y Daphnia pulex Water flea  Dpux\matK Y Daphnia pulex Water flea  Dpux\JGI_V11_347465 Y Daphnia pulex Water flea  Dpux\JGI_V11_340396 Y Daphnia pulex Water flea  Dpux\JGI_V11_228828 Y Daphnia pulex Water flea  Dpux\cytb Y Daphnia pulex Water flea  Dpux\JGI_V11_328125 Y Daphnia pulex Water flea  Dpux\JGI_V11_99394 Y Daphnia pulex Water flea  Dpux\JGI_V11_347478 Y Daphnia pulex Water flea  Dpux\COI Y Daphnia pulex Water flea  Dpux\JGI_V11_104532 Y Daphnia pulex Water flea  Dpux\JGI_V11_347450 Y Ixodes scapularis Deer tick  Isca\ISCW021682 Y Ixodes scapularis Deer tick  Isca\ISCW007246 Y
Orthologs in non-Arthropod Metazoa (EOG65F8G7)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_020045gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_023179gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_000309gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_018088gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_026438gn Y Danio rerio Zebrafish  Drer\abch1 Y
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD21277 Drosophila sechellia Dsec\GM10317 Drosophila erecta Dere\GG11472 Drosophila yakuba Dyak\GE23664 Drosophila ananassae Dana\GF20731 Drosophila persimilis Dper\GL21842 Drosophila willistoni Dwil\GK13315 Drosophila virilis Dvir\GJ23863 Drosophila mojavensis Dmoj\GI22617 Drosophila grimshawi Dgri\GH19414
Stocks & Reagents
Stocks Listed in FlyBase ( 10 )
Bloomington	37666 y1 w*; Mi{MIC}CG33970MI04415 22850 y1 w67c23; Mi{ET1}CG33970MB00606 37648 y1 w*; Mi{MIC}CG33970MI04364/TM3, Sb1 Ser1
Harvard	- PBac{WH}CG33970f04675
VDRC	v101855 P{KK109988}VIE-260B v33088 w1118; P{GD297}v33088 v33090 w1118; P{GD297}v33090 v38661 w1118; P{GD7619}v38661 v46838 w1118; P{GD297}v46838/CyO v38660 w1118; P{GD7619}v38660/CyO
Genomic Clones ( 2 )
	BACR15K06 BACR19L21 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 97 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH14066 RE14039
Other clones	DPiM_RE14039
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT03414 AT28095 GH12712 GH12747 LP15186 RE20783 RE56076 RE67831 RE72005
Other clones	266 33887 44315 64042 71787 81093 82150 172919 276703 CK01.6D.D1 CK01.49B.C5 CK01.87B.F4 EK041411 EK069054 EK114602 EK159740 EK190630 EK200420 EK213230 EK230204 EK273717 EK303728 EP16610 GH12746 RP003037813 RP003040290 RP003061274 RP003062592 RP003065005 RP003084485 RP003087458 RP003090168 RP003113619 RP003116673 RP003129726 RP003133399 RP003136526 RP003138094 RP003139856 RP003159757 RP003161029 RP003165001 RP003182727 RP003189010 RP003189015 RP003218528 RP003221977 RP003222497 RP003233606 RP003238773 RP003240977 RP003246840 RP003269952 RP003276250 RP003280777 RP003281752 RP003285093 RP003287883 RP003294636 RP003328842 RP003335368 RP003335912 RP003352893 RP003358103 RP003359887 RP003383173 RP003437101 RP003443907 RP003444546 RP003456214 RP003478783 RP003479987 RP003500526 RP003533892 RP003546703 RP003585061 RP003594747 RP003599803 RP003602279 RP003618566 RP003629069 RP003635025 RP003651826 RP003665540 RP003672204
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0053970 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43186
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG6162 CG6166 (FlyBase Genome Annotators, 2005, FlyBase Genome Annotators, 2002-2003)
Additional comments	Annotations CG6162 and CG6166 merged as CG31085 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2005, FlyBase Genome Annotators, 2002-2003)
Other Comments
	Shows particularly robust cycling of transcription in adult heads, as assessed by expression analysis using high density oligonucleotide arrays with probe generated during three 12-point time course experiments over the course of 6 days. Shows significant change of expression pattern in circadian mutant background; decreased expression in per01, tim01 and ClkJrk background. (Claridge-Chang et al., 2001)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_001038981 NM_001038982 RefSeq (Proteins) • NP_001034070 NP_001034071 DDBJ / EMBL / GenBank • AAF56582.2 AAF56584.2 AAF56585 AAF56585.2 AAL13602 AAO39535 ABC66191 AI238079 AW940532 AY058373 BT003531 Entrez Gene - A searchable database of RefSeq genes. • 43186 UniProtKB/TrEMBL • Q9VBF7 Q86P18 Q95U16
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • ABC-2 (IPR000412) ABC transporter-like (IPR003439) AAA+ ATPase domain (IPR003593) P-loop containing nucleoside triphosphate hydrolase (IPR027417) ABC transporter, conserved site (IPR017871) ABC-2 type transporter (IPR013525) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE14039
Linkouts
	BioGRID - A database of protein and genetic interactions • 68083 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0053970 DroID - A comprehensive database of gene and protein interactions. • FBgn0053970 DRSC - Results from RNAi screens. • FBgn0053970 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0053970 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG14559-RA;CG31085-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0053970 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43186 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43186 modMine - Data generated by the modENCODE project. • FBgn0053970
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	CG6162 (Dean et al., 2001, Anholt and Mackay, 2001, ) CG6166 (Butler et al., 2003, Claridge-Chang et al., 2001, ) CG14559 (Giot et al., 2003, Hazelett et al., 2009) CG31085 (Qin et al., 2005) CG33970 (Holloway et al., 2008, Keleman et al., 2009.8.5, Wasbrough et al., 2010)
Name Synonym
Secondary FlyBase IDs
	FBgn0039422 FBgn0039423 FBgn0040604 FBgn0051085 FBpp0084366 FBpp0084376 FBpp0084377 FBtr0084993 FBtr0085004 FBtr0085005
References ( 30 )
Generate a list of	All references relating to this gene ( 30 )
List References by type	Research paper  ( 7 ) Supplementary material  ( 7 ) Review  ( 1 ) Personal communication to FlyBase  ( 8 ) FlyBase analysis  ( 3 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 1 )
	Weber et al., 2012, PLoS ONE 7(4): e34745 Genome-Wide Association Analysis of Oxidative Stress Resistance in Drosophila melanogaster. [FBrf0218073] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...