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Gene Dmel\CR34024

General Information
Symbol	Dmel\CR34024	Species	D. melanogaster
Name		Annotation symbol	CR34024
Feature type	non_protein_coding_gene	FlyBase ID	FBgn0054024
Gene Model Status	Uncertain	Stock availability	None publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	96F8-96F8	Sequence location	3R:21,757,123..21,757,738 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CR34024 (FBgn0054024).The gene has a gene model, but the supporting evidence is inconclusive. It is a non_protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has one annotated transcript. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very low expression to a trough of no expression detected. Peak expression observed at stages throughout the pupal period, in adult male stages. Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1638925_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG34024. Gene sequence location is 3R:21757123..21757738.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 96F8-96F8
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CR34024 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Probable lncRNA gene; may encode small polypeptide(s). Gene model reviewed during 5.40 Gene model uncertain: minimal support.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt)   CR34024-RB FBtr0308933  NR_048496   535
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence   Name CX309617   CX309618
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    1.65 Larval Midgut    4.7 Larval Hindgut    1.5 Larval Malpighian Tubules    3.1 Larval Fat Body    0.9 Larval Salivary Gland    3.2 Larval Trachea    3.125 Larval Carcass    1.85 Adult Head    0.9 Adult Eye    2.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    4.2 Adult Midgut    5.9 Adult Hindgut    1.8 Adult Malpighian Tubules    3.7 Adult Fat Body    5.2 Adult Salivary Gland    13.5 Adult Heart    0.825 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    2.1 Adult Testis    5.1 Adult Male Accessory Gland    6.4 Adult Carcass    1.7 Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    1.65 Larval Midgut    4.7 Larval Hindgut    1.5 Larval Malpighian Tubules    3.1 Larval Fat Body    0.9 Larval Salivary Gland    3.2 Larval Trachea    3.125 Larval Carcass    1.85 Adult Head    0.9 Adult Eye    2.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    4.2 Adult Midgut    5.9 Adult Hindgut    1.8 Adult Malpighian Tubules    3.7 Adult Fat Body    5.2 Adult Salivary Gland    13.5 Adult Heart    0.825 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    2.1 Adult Testis    5.1 Adult Male Accessory Gland    6.4 Adult Carcass    1.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    1.65 Larval Midgut    4.7 Larval Hindgut    1.5 Larval Malpighian Tubules    3.1 Larval Fat Body    0.9 Larval Salivary Gland    3.2 Larval Trachea    3.125 Larval Carcass    1.85 Adult Head    0.9 Adult Eye    2.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    4.2 Adult Midgut    5.9 Adult Hindgut    1.8 Adult Malpighian Tubules    3.7 Adult Fat Body    5.2 Adult Salivary Gland    13.5 Adult Heart    0.825 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    2.1 Adult Testis    5.1 Adult Male Accessory Gland    6.4 Adult Carcass    1.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    1.65 Larval Midgut    4.7 Larval Hindgut    1.5 Larval Malpighian Tubules    3.1 Larval Fat Body    0.9 Larval Salivary Gland    3.2 Larval Trachea    3.125 Larval Carcass    1.85 Adult Head    0.9 Adult Eye    2.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    4.2 Adult Midgut    5.9 Adult Hindgut    1.8 Adult Malpighian Tubules    3.7 Adult Fat Body    5.2 Adult Salivary Gland    13.5 Adult Heart    0.825 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    2.1 Adult Testis    5.1 Adult Male Accessory Gland    6.4 Adult Carcass    1.7 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    1.65 Larval Midgut    4.7 Larval Hindgut    1.5 Larval Malpighian Tubules    3.1 Larval Fat Body    0.9 Larval Salivary Gland    3.2 Larval Trachea    3.125 Larval Carcass    1.85 Adult Head    0.9 Adult Eye    2.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    4.2 Adult Midgut    5.9 Adult Hindgut    1.8 Adult Malpighian Tubules    3.7 Adult Fat Body    5.2 Adult Salivary Gland    13.5 Adult Heart    0.825 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    2.1 Adult Testis    5.1 Adult Male Accessory Gland    6.4 Adult Carcass    1.7 Expression Level Scale  None   Low  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    1.65 Larval Midgut    4.7 Larval Hindgut    1.5 Larval Malpighian Tubules    3.1 Larval Fat Body    0.9 Larval Salivary Gland    3.2 Larval Trachea    3.125 Larval Carcass    1.85 Adult Head    0.9 Adult Eye    2.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    4.2 Adult Midgut    5.9 Adult Hindgut    1.8 Adult Malpighian Tubules    3.7 Adult Fat Body    5.2 Adult Salivary Gland    13.5 Adult Heart    0.825 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    2.1 Adult Testis    5.1 Adult Male Accessory Gland    6.4 Adult Carcass    1.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    1.65 Larval Midgut    4.7 Larval Hindgut    1.5 Larval Malpighian Tubules    3.1 Larval Fat Body    0.9 Larval Salivary Gland    3.2 Larval Trachea    3.125 Larval Carcass    1.85 Adult Head    0.9 Adult Eye    2.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    4.2 Adult Midgut    5.9 Adult Hindgut    1.8 Adult Malpighian Tubules    3.7 Adult Fat Body    5.2 Adult Salivary Gland    13.5 Adult Heart    0.825 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    2.1 Adult Testis    5.1 Adult Male Accessory Gland    6.4 Adult Carcass    1.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    1.65 Larval Midgut    4.7 Larval Hindgut    1.5 Larval Malpighian Tubules    3.1 Larval Fat Body    0.9 Larval Salivary Gland    3.2 Larval Trachea    3.125 Larval Carcass    1.85 Adult Head    0.9 Adult Eye    2.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    4.2 Adult Midgut    5.9 Adult Hindgut    1.8 Adult Malpighian Tubules    3.7 Adult Fat Body    5.2 Adult Salivary Gland    13.5 Adult Heart    0.825 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    2.1 Adult Testis    5.1 Adult Male Accessory Gland    6.4 Adult Carcass    1.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    0.9   NA  Eye    2.75   NA  Brain    1.9   1.65  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    1.2   NA  Crop    4.2   4.7  Midgut    5.9   1.5  Hindgut    1.8   3.1  Malpighian Tubules    3.7   0.9  Fat Body    5.2   3.2  Salivary Gland    no informative data   NA  Heart    0.825   3.125  Trachea    NA   NA  VirginFemale Spermatheca    2.5   NA  InseminatedFemale Spermatheca    3.4   NA  Ovary    2.1   NA  Testis    5.1   NA  Male Accessory Gland    6.4   1.85  Carcass    1.7 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Treatments RNA-Seq
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (Graveley et al., 2011) mE1_20_mRNA_expression_cluster_08
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0054024 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • HDC15672
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CR34024 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CR34024 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
	There is no information supporting a biological process, cellular component or molecular function term for this gene. (Based on a review of available data on: 2006-05-23)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	non_protein_coding_gene (FlyBase Genome Annotators, 2011) nuclear_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CR34024 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0054024
Orthologs
OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search No orthologs identified Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (None identified)
No orthologies identified
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (2) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD21252 Drosophila sechellia Dsec\GM10283
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 1 )
	BACR22N13 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 1 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	AM03171
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0054024 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 12798269
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: CG34024 HDC15672 (FlyBase Genome Annotators, 2005)
Source for database merge of
Additional comments
Other Comments
	Annotation CG34024 renamed CR34024 in release 5.40 of the genome annotation. (FlyBase Genome Annotators, 2011) New annotation (CG34024) in release 4.3 of the genome annotation. (FlyBase Genome Annotators, 2005)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NR_048496 DDBJ / EMBL / GenBank • ABC66190 CX309617 CX309618 Entrez Gene - A searchable database of RefSeq genes. • 12798269 UniProtKB/TrEMBL • Q6IJ87
Other Crossreferences
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0054024 DRSC - Results from RNAi screens. • FBgn0054024 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0054024 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • HDC15672 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0054024 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 12798269 modMine - Data generated by the modENCODE project. • FBgn0054024
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	BP1090 (Yandell et al., 2005) CG34024 (Lin and Kellis, 2006.12.15) CR34024 (FlyBase Genome Annotators, 2011) HDC15672   unnamed (Yandell et al., 2005)
Name Synonym
Secondary FlyBase IDs
	FBgn0082650
References ( 8 )
Research paper	Yandell et al., 2005, Proc. Natl. Acad. Sci. U.S.A. 102(5): 1566--1571 A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome. [FBrf0183655] Hild et al., 2003, Genome Biol. 5(1): R3 An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome. [FBrf0167699]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] Yandell et al., 2005, Proc. Natl. Acad. Sci. U.S.A.: Validation of gene predictions in Drosophila melanogaster. Supplementary information for Yandell et al., 2005, Proc. Natl. Acad. Sci. USA 102(5): 1566--1571. [FBrf0183657]
Personal communication to FlyBase	Lin and Kellis, 2006.12.15, Gene models flagged as uncertain or dubious. Gene models flagged as uncertain or dubious. [FBrf0204466]
FlyBase analysis	FlyBase Genome Annotators, 2011, Changes affecting gene model number or type in release 5.40 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 5.40 of the annotated D.melanogaster genome. [FBrf0214297] FlyBase Genome Annotators, 2005, Changes affecting gene model number or type in release 4.3 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 4.3 of the annotated D.melanogaster genome. [FBrf0188580] FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398]