FB2020_01, released Feb 12, 2020

Gene: Dmel\salto

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General Information
Symbol
Dmel\salto
Species
D. melanogaster
Name
salto
Annotation Symbol
CG13164
Feature Type
protein_coding_gene
FlyBase ID
FBgn0061197
Gene Model Status
Current
Stock Availability
4 publicly available
Gene Snapshot
Insufficient genetic data for FlyBase to solicit a summary. [Date last reviewed: 2016-06-30]
Other Summaries
Also Known As

SIP2

Key Links
Genomic Location
Cytogenetic map
48F6-48F6
Sequence location
2R:12,302,544..12,306,269 [-]
Recombination map

2-66

RefSeq locus
NT_033778 REGION:12302544..12306269
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Protein Family (UniProt)
-
Protein Signatures (InterPro)
    -
    Molecular Function (GO)
    [Detailed GO annotations]
    Experimental Evidence
    -
    Predictions / Assertions
    -
    Summaries
    Gene Model and Products
    Number of Transcripts
    4
    Number of Unique Polypeptides
    3

    Please see the GBrowse view of Dmel\salto or the JBrowse view of Dmel\salto for information on other features

    To submit a correction to a gene model please use the Contact FlyBase form

    Protein Domains (via Pfam)
    Isoform displayed:
    Pfam protein domains
    InterPro name
    classification
    start
    end
    Protein Domains (via SMART)
    Isoform displayed:
    SMART protein domains
    InterPro name
    classification
    start
    end
    Comments on Gene Model

    Alternative translation stop created by use of multiphasic reading frames within coding region.

    Low-frequency RNA-Seq exon junction(s) not annotated.

    Gene model reviewed during 5.49

    Sequence Ontology: Class of Gene
    nuclear_gene
    protein_coding_gene
    Transcript Data
    Annotated Transcripts
    Name
    FlyBase ID
    RefSeq ID
    Length (nt)
    Assoc. CDS (aa)
    salto-RA
    FBtr0089669
    NM_136912
    2973
    832
    salto-RC
    FBtr0089670
    NM_165873
    3065
    681
    salto-RE
    FBtr0089671
    NM_165874
    2910
    589
    salto-RG
    FBtr0089668
    NM_176152
    3025
    589
    Additional Transcript Data and Comments
    Reported size (kB)
    Comments
    External Data
    Crossreferences
    Polypeptide Data
    Annotated Polypeptides
    Name
    FlyBase ID
    Predicted MW (kDa)
    Length (aa)
    Theoretical pI
    RefSeq ID
    GenBank
    salto-PA
    FBpp0088611
    95.8
    832
    7.20
    NP_610756
    AAF58537
    salto-PC
    FBpp0088612
    78.6
    681
    9.65
    NP_725124
    AAM68658
    salto-PE
    FBpp0088613
    67.7
    589
    9.84
    NP_725125
    AAM68659
    salto-PG
    FBpp0088610
    67.7
    589
    9.84
    NP_788332
    AAM68660
    Polypeptides with Identical Sequences

    The group(s) of polypeptides indicated below share identical sequence to each other.

    589 aa isoforms: salto-PE, salto-PG
    Additional Polypeptide Data and Comments
    Reported size (kDa)
    Comments
    External Data
    Crossreferences
    Linkouts
    Sequences Consistent with the Gene Model
    Mapped Features

    Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\salto using the Feature Mapper tool.

    External Data
    Crossreferences
    Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
    Linkouts
    Gene Ontology (0 terms)
    Molecular Function (0 terms)
    There is no information supporting a Molecular Function term for this gene. (Based on a review of available data on: 2011-10-13 )
    Terms Based on Experimental Evidence (0 terms)
    Terms Based on Predictions or Assertions (0 terms)
    Biological Process (0 terms)
    There is no information supporting a Biological Process term for this gene. (Based on a review of available data on: 2011-10-13 )
    Terms Based on Experimental Evidence (0 terms)
    Terms Based on Predictions or Assertions (0 terms)
    Cellular Component (0 terms)
    There is no information supporting a Cellular Component term for this gene. (Based on a review of available data on: 2011-10-13 )
    Terms Based on Experimental Evidence (0 terms)
    Terms Based on Predictions or Assertions (0 terms)
    Expression Data
    Expression Summary Ribbons
    Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
    For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
    Transcript Expression
    Additional Descriptive Data
    Marker for
     
    Subcellular Localization
    CV Term
    Polypeptide Expression
    mass spectroscopy
    Stage
    Tissue/Position (including subcellular localization)
    Reference
    day 5 of adulthood & male -- day 7 of adulthood & male
    spermatozoon
    (Wasbrough et al., 2010)
    adult stage
    adult head
    (Aradska et al., 2015)
    Additional Descriptive Data
    Marker for
     
    Subcellular Localization
    CV Term
    Evidence
    References
    Expression Deduced from Reporters
    High-Throughput Expression Data
    Associated Tools

    GBrowse - Visual display of RNA-Seq signals

    View Dmel\salto in GBrowse 2
    RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
    Bulk Downloads
    RNA-Seq RPKM values for all genes
    Reference
    See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
    Developmental Proteome: Life Cycle
    Developmental Proteome: Embryogenesis
    External Data and Images
    Linkouts
    BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
    FLIGHT - Cell culture data for RNAi and other high-throughput technologies
    FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
    Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
    Flygut - An atlas of the Drosophila adult midgut
    Images
    FlyBase Wiki
    Image Based Resources
    Alleles, Insertions, and Transgenic Constructs
    Classical and Insertion Alleles ( 3 )
    For All Classical and Insertion Alleles Show
     
    Other relevant insertions
    Transgenic Constructs ( 4 )
    For All Alleles Carried on Transgenic Constructs Show
    Transgenic constructs containing/affecting coding region of salto
    Transgenic constructs containing regulatory region of salto
    Deletions and Duplications ( 1 )
    Phenotypes
    Orthologs
    Downloads
    Download All DIOPT Orthologs
    Download All OrthoDB Orthologs
    Human Orthologs (via DIOPT v7.1)
    Homo sapiens (Human) (0)
    No records found.
    Model Organism Orthologs (via DIOPT v7.1)
    Mus musculus (laboratory mouse) (0)
    No records found.
    Rattus norvegicus (Norway rat) (0)
    No records found.
    Xenopus tropicalis (Western clawed frog) (0)
    No records found.
    Danio rerio (Zebrafish) (0)
    No records found.
    Caenorhabditis elegans (Nematode, roundworm) (1)
    Cele\myo-5
    1 of 15
    Yes
    No
    Arabidopsis thaliana (thale-cress) (7)
    Atha\AT4G01180
    1 of 9
    Yes
    Yes
    Atha\AT5G59390
    1 of 9
    Yes
    Yes
    Atha\FDM1
    1 of 9
    Yes
    Yes
    Atha\FDM4
    1 of 9
    Yes
    Yes
    Atha\FDM5
    1 of 9
    Yes
    Yes
    Atha\IDN2
    1 of 9
    Yes
    Yes
    Atha\PRP3
    1 of 9
    Yes
    Yes
    Saccharomyces cerevisiae (Brewer's yeast) (0)
    No records found.
    Schizosaccharomyces pombe (Fission yeast) (0)
    No records found.
    Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG091907Q5 )
    Organism
    Common Name
    Gene
    AAA Syntenic Ortholog
    Multiple Dmel Genes in this Orthologous Group
    Drosophila melanogaster
    fruit fly
    Dmel\salto
    Drosophila suzukii
    Spotted wing Drosophila
    Dsuz\DS10_00002599
    Drosophila simulans
    Dsim\GD25850
    Drosophila sechellia
    Dsec\GM20369
    Drosophila sechellia
    Dsec\GM23435
    Drosophila erecta
    Dere\GG22589
    Drosophila yakuba
    Dyak\GE13459
    Drosophila ananassae
    Dana\GF12073
    Drosophila pseudoobscura pseudoobscura
    Dpse\GA26224
    Drosophila pseudoobscura pseudoobscura
    Dpse\GA12090
    Drosophila pseudoobscura pseudoobscura
    Dpse\GA27073
    Drosophila persimilis
    Dper\GL11259
    Drosophila persimilis
    Dper\GL14734
    Drosophila persimilis
    Dper\GL23842
    Drosophila willistoni
    Dwil\GK21411
    Drosophila virilis
    Dvir\GJ21550
    Drosophila mojavensis
    Dmoj\GI18946
    Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG0915026K )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Musca domestica
    House fly
    Mdoa\17021244
    Glossina morsitans
    Tsetse fly
    Gmor\GMOY010067
    Lucilia cuprina
    Australian sheep blowfly
    Lcup\FF38_07363
    Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W01YO )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Acyrthosiphon pisum
    Pea aphid
    Apim\ACYPI083577
    Acyrthosiphon pisum
    Pea aphid
    Apim\ACYPI067697
    Acyrthosiphon pisum
    Pea aphid
    Apim\ACYPI082868
    Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( None identified )
    No non-Insect Arthropod orthologies identified
    Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G02WN )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Ciona intestinalis
    Vase tunicate
    Cint\ENSCING00000000446
    Paralogs
    Downloads
    Download All DIOPT Paralogs
    Paralogs (via DIOPT v7.1)
    Drosophila melanogaster (Fruit fly) (0)
    No records found.
    Human Disease Associations
    FlyBase Human Disease Model Reports
      Disease Model Summary Ribbon
      Disease Ontology (DO) Annotations
      Models Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Evidence
      References
      Potential Models Based on Orthology ( 0 )
      Human Ortholog
      Disease
      Evidence
      References
      Modifiers Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Interaction
      References
      Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)
      Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
      Homo sapiens (Human)
      Gene name
      Score
      OMIM
      OMIM Phenotype
      DO term
      Complementation?
      Transgene?
      Functional Complementation Data
      Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
      Interactions
      Summary of Physical Interactions
      esyN Network Diagram
      Interactions Browser
      Summary of Genetic Interactions
      esyN Network Diagram
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      External Data
      Linkouts
      BioGRID - A database of protein and genetic interactions.
      DroID - A comprehensive database of gene and protein interactions.
      InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
      MIST (protein-protein) - An integrated Molecular Interaction Database
      Pathways
      Signaling Pathways (FlyBase)
      Metabolic Pathways
      External Data
      Linkouts
      Genomic Location and Detailed Mapping Data
      Chromosome (arm)
      2R
      Recombination map

      2-66

      Cytogenetic map
      48F6-48F6
      Sequence location
      2R:12,302,544..12,306,269 [-]
      FlyBase Computed Cytological Location
      Cytogenetic map
      Evidence for location
      48F6-48F6
      Limits computationally determined from genome sequence between P{lacW}Camk11802&P{lacW}l(2)k01103k01103 and P{EP}garzEP2028
      Experimentally Determined Cytological Location
      Cytogenetic map
      Notes
      References
      Experimentally Determined Recombination Data
      Location

      2-66

      (FlyBase, 2016)

      2-68.0

      (Comeron et al., 2012)
      Left of (cM)
      Right of (cM)
      Notes
      Stocks and Reagents
      Stocks (4)
      Genomic Clones (11)
       

      Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

      cDNA Clones (120)
       

      Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

      cDNA clones, fully sequences
      BDGP DGC clones
      Other clones
      Drosophila Genomics Resource Center cDNA clones

      For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

      cDNA Clones, End Sequenced (ESTs)
      BDGP DGC clones
      Other clones
      RNAi and Array Information
      Linkouts
      DRSC - Results frm RNAi screens
      GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
      Antibody Information
      Laboratory Generated Antibodies
       
      Commercially Available Antibodies
       
      Other Information
      Relationship to Other Genes
      Source for database identify of

      Source for identity of: CG13164 SIP2

      (FlyBase, 2009-)

      Source for identity of: salto CG13164

      (Augière et al., 2019)
      Source for database merge of

      Source for merge of: SIP2 CG13164

      (Montana, 2003.9.7)
      Additional comments

      FlyBase curator comment: 'salto' rather than 'sal' is used as the FlyBase gene symbol to minimise confusion with other genes for which 'sal' has been used as a synonym, particularly salm (referred to as 'sal' in >200 publications).

      (Augière et al., 2019)

      The gene symbol "SIP2" has been reverted to "CG13164" as it was originally named based on a 2001 conference abstract (FBrf0144616) and hasn't been named/characterized in a peer-reviewed publication since. Reverting to the CG number will also reduce confusion with the "sip2" ("septin interacting protein 2") gene symbol, from which it differed only by case.

      (FlyBase, 2009-)
      Other Comments

      Identification: in a yeast two hybrid sceen for proteins that interact with Syx1A gene product.

      (Montana and Littleton, 2001)
      Origin and Etymology
      Discoverer
      Etymology

      The gene is named "salto" (French for "somersault") after the mutant phenotype.

      (Augière et al., 2019)
      Identification
      External Crossreferences and Linkouts ( 43 )
      Sequence Crossreferences
      NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
      GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
      GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
      RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
      UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
      Other crossreferences
      BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
      Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
      Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
      Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
      Flygut - An atlas of the Drosophila adult midgut
      GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
      KEGG Genes - Molecular building blocks of life in the genomic space.
      modMine - A data warehouse for the modENCODE project
      Linkouts
      BioGRID - A database of protein and genetic interactions.
      DroID - A comprehensive database of gene and protein interactions.
      DRSC - Results frm RNAi screens
      FLIGHT - Cell culture data for RNAi and other high-throughput technologies
      FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
      FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
      FlyMine - An integrated database for Drosophila genomics
      InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
      MIST (protein-protein) - An integrated Molecular Interaction Database
      Synonyms and Secondary IDs (7)
      Datasets (0)
      Study focus (0)
      Experimental Role
      Project
      Project Type
      Title
      References (30)