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Gene Dyak\28SrRNA

General Information
Symbol	Dyak\28SrRNA	Species	D. yakuba
Name	28SrRNA	Annotation symbol
Feature type	rRNA_gene	FlyBase ID	FBgn0061213
Gene Model Status	Unannotated	Stock availability	None publicly available
Also Known As	28S rRNA
Genomic Location
Chromosome (arm)		Recombination map
Cytogenetic map		Sequence location
Summary Information
Automatically generated summary See sections below for more information	The gene 28SrRNA is referred to in FlyBase by the symbol Dyak\28SrRNA (FBgn0061213). It is a rRNA_gene from Drosophila yakuba. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has no annotated transcripts. Gene has not been localized to the genome sequence.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa)
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name L38440   X71167
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
Mapped Features
Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
modENCODE Anatomy RNA-Seq
modENCODE Development RNA-Seq
modENCODE Cell Lines RNA-Seq
modENCODE Treatments RNA-Seq
Expression Clusters
External Data & Images
Linkouts
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Dyak\28SrRNA Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Dyak\28SrRNA Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	member_gene_array   nuclear_gene   rRNA_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Dyak\28SrRNA allele Gene References
External Data
Linkouts
Orthologs
OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search No orthologs identified Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Ortholog(s) in Drosophila melanogaster (None identified)
No D. melanogaster orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 0 )
cDNA Clones ( 0 )
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Encoded by	Dyak\bb   Dyak\Ybb
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	DDBJ / EMBL / GenBank • L38440 X71167
Other Crossreferences
Linkouts
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	28S (Gao et al., 2011) 28S DNA (Lohe and Roberts, 2000) 28S rRNA (Hayward, 1994.12.8, Stage and Eickbush, 2007) Dyak\28SrRNA
Name Synonym	28S ribosomal RNA (Solignac, 1993.2.2) 28SrRNA
Secondary FlyBase IDs
References ( 6 )
Research paper	Gao et al., 2011, Molec. Phylog. Evol. 60(1): 98--107 Phylogenetic relationships between Sophophora and Lordiphosa, with proposition of a hypothesis on the vicariant divergences of tropical lineages between the Old and New Worlds in the family Drosophilidae. [FBrf0213767] Stage and Eickbush, 2007, Genome Res. 17(12): 1888--1897 Sequence variation within the rRNA gene loci of 12 Drosophila species. [FBrf0202637] Roy et al., 2005, Heredity 94(4): 388--395 Evolution of the chromosomal location of rDNA genes in two Drosophila species subgroups: ananassae and melanogaster. [FBrf0184019] Lohe and Roberts, 2000, Genetica 109(1-2): 125--130 Evolution of DNA in heterochromatin: the Drosophila melanogaster sibling species subgroup as a resource. [FBrf0135791]
DNA/RNA sequence record	Hayward, 1994.12.8, GenBank/EMBL/DDBJ: L38440 Drosophila yakuba 28S ribosomal RNA (28S rRNA) gene, near 3' end. [FBrf0115959] Solignac, 1993.2.2, GenBank/EMBL/DDBJ: X71167 D.yakuba 28S ribosomal RNA, D2 domain. [FBrf0120891]