pncr009:3L , hp-pncr009
Please see the JBrowse view of Dmel\hpRNA:LINR-2 for information on other features
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Gene model reviewed during 5.53
Gene model reviewed during 5.46
Antisense (in part): overlaps CG32212 on opposite strand.
Supported by strand-specific RNA-Seq data.
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 6.02
Gene model reviewed during 6.17
Pseudogene (in part): incorporates a pseudogene similar to 825-Oak, CG18294, and related genes; proximate; partial.
Duplication of the proximate region containing 825-Oak/CG12519, which are related, divergently transcribed genes; supports the hairpin structure.
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\hpRNA:LINR-2 using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: library contains gonads
Tissue-specific RNA-seq reveals that hairpin RNA is dominantly expressed in testis and also accumulates in lbraries from mass-isolated imaginal discs containing larval gonads.
JBrowse - Visual display of RNA-Seq signals
View Dmel\hpRNA:LINR-2 in JBrowse3-45
3-42.8
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
CR33940 reclassified as a pseudogene in release 6.02 of the genome annotation.
The pncr009:3L annotation contains sequence encoding a small-RNA-generating hairpin that produces 21-22 nucleotide RNAs.
New annotation (CR33940) in r4.2 of the genome annotation.
Source for identity of: pncr009:3L BcDNA:RH57193
Source for identity of: hpRNA:CR33940 pncr009:3L
Source for identity of: hpRNA:LINR-2 hpRNA:CR33940
The gene is named 'LINR-2' based on function as an Lsd1(Su(var)3-3)-interacting non-coding RNA.
