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Gene Dmel\att-ORFA

General Information
Symbol	Dmel\att-ORFA	Species	D. melanogaster
Name	alternative testis transcripts open reading frame A	Annotation symbol	CG4241
Feature type	protein_coding_gene	FlyBase ID	FBgn0067783
Gene Model Status	Current	Stock availability	5 publicly available
Also Known As	att
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	92F1-92F1	Sequence location	3R:16,378,111..16,383,403 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene alternative testis transcripts open reading frame A is referred to in FlyBase by the symbol Dmel\att-ORFA (CG4241, FBgn0067783). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: transmembrane transporter activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: transmembrane transport. 5 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Graves disease carrier protein; Mitochondrial carrier domain; Mitochondrial carrier protein; Mitochondrial substrate/solute carrier. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 18-24 hour embryonic stages, during late larval stages, at stages throughout the pupal period, in stages of adults of both sexes. This gene is annotated by FlyBase as a dicistronic gene, meaning that some or all of its transcripts encode two or more polypeptide-coding open reading frames (ORFs) , with each ORF assigned to a different gene. The distribution of RNA-Seq coverage data amongst the different encoded genes cannot be determined. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, adult midgut, adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, adult female reproductive system, adult male reproductive system, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1633573_a_at aligns to a genomic region shared by exons of 2 FlyBase-annotated genes; hence it is impossible to interpret the expression pattern and levels of att-ORFB expression signal. See the GBrowse view of att-ORFB to determine the overlapping gene(s). Gene sequence location is 3R:16378111..16383403.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2012_01	Sequence features BKN29328
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 92F1-92F1   Limits computationally determined from genome sequence between P{PZ}l(3)1058510585 and P{EP}SyndEP409
Experimentally Determined Cytological Location
Cytogenetic map Notes References 92E3-92E4     (Madigan et al., 1996)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\att-ORFA for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	The att locus encodes two proteins, att-ORFA and att-ORFB, that overlap in the DNA sequences that encode them but not in amino acid sequence, due to use of different reading frames (FBrf0089733). Multiphase exon postulated: this gene shares a region of coding sequence with an overlapping gene, but different reading frames are utilized in the overlapping coding region. gene_with_start_codon_CUG ; SO:0001740 Unconventional translation start (CUG) postulated; FBrf0089733.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) att-ORFA-RA FBtr0089480  NM_142634   1914   365 att-ORFA-RB FBtr0089481  NM_169901   1337   290 att-ORFA-RC FBtr0089482  NM_206522   1669   365
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein att-ORFA-PA   FBpp0088485   40.4   365   10.44     NP_650891   AAF55774 att-ORFA-PB   FBpp0088486   32.5   290   10.57     NP_732519   AAN14352 att-ORFA-PC   FBpp0088980   40.4   365   10.44     NP_996244   AAS65181
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Mitochondrial carrier protein (IPR002067) Graves disease carrier protein (IPR002167) Mitochondrial carrier domain (IPR023395) Mitochondrial substrate/solute carrier (IPR018108)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF55774   AE014297 AAN14352   AE014297 AAS65181   BF486020   BF487354   BF489787   BF499175   BF499906   BF505536   BI213518   BI354566   BI372442   BI580135   BI632181   BT021264 AAX33412   BT082015   CL868485   CO189661   CO263812   CO263993   CO275467   CO288906   CO309747   CO310998   CO312274   CO320291   CO341046   CZ479508   CZ480909   EC064175   EC064527   EC072161   EC083347   EC087607   EC196263   EC213553   EC241272   EC244185   EC244220   EC250515
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8IN53 Q9VDL7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0067783    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0067783 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 18-24 hour embryonic stages, during late larval stages, at stages throughout the pupal period, in stages of adults of both sexes. This gene is annotated by FlyBase as a dicistronic gene, meaning that some or all of its transcripts encode two or more polypeptide-coding open reading frames (ORFs) , with each ORF assigned to a different gene. The distribution of RNA-Seq coverage data amongst the different encoded genes cannot be determined. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0067783 expression level Developmental Stage   Expression Level embryo 00-02hr    1260 embryo 02-04hr    432 embryo 04-06hr    276 embryo 06-08hr    564 embryo 08-10hr    695 embryo 10-12hr    907 embryo 12-14hr    826 embryo 14-16hr    1019 embryo 16-18hr    1312 embryo 18-20hr    1492 embryo 20-22hr    1304 embryo 22-24hr    1235 larva L1    1190 larva L2    918 larva L3 12hr old    1046 larva L3 puffstage 1-2    832 larva L3 puffstage 3-6    1203 larva L3 puffstage 7-9    1434 white prepupae new    1441 white prepupae 12hr    1808 white prepupae 24hr    1757 pupae 2d postWPP    1821 pupae 3d postWPP    1724 pupae 4d postWPP    2828 adult male 01day    2914 adult male 05day    3349 adult male 30day    3359 adult female 01day    1520 adult female 05day    1298 adult female 30day    1274 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1260) embryo 02-04hr  (432) embryo 04-06hr  (276) embryo 06-08hr  (564) embryo 08-10hr  (695) embryo 10-12hr  (907) embryo 12-14hr  (826) embryo 14-16hr  (1019) embryo 16-18hr  (1312) embryo 18-20hr  (1492) embryo 20-22hr  (1304) embryo 22-24hr  (1235) larva L1  (1190) larva L2  (918) larva L3 12hr old  (1046) larva L3 puffstage 1-2  (832) larva L3 puffstage 3-6  (1203) larva L3 puffstage 7-9  (1434) white prepupae new  (1441) white prepupae 12hr  (1808) white prepupae 24hr  (1757) pupae 2d postWPP  (1821) pupae 3d postWPP  (1724) pupae 4d postWPP  (2828) adult male 01day  (2914) adult male 05day  (3349) adult male 30day  (3359) adult female 01day  (1520) adult female 05day  (1298) adult female 30day  (1274) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1260 embryo 02-04hr    432 embryo 04-06hr    276 embryo 06-08hr    564 embryo 08-10hr    695 embryo 10-12hr    907 embryo 12-14hr    826 embryo 14-16hr    1019 embryo 16-18hr    1312 embryo 18-20hr  1492 embryo 20-22hr    1304 embryo 22-24hr    1235 larva L1    1190 larva L2    918 larva L3 12hr old    1046 larva L3 puffstage 1-2    832 larva L3 puffstage 3-6    1203 larva L3 puffstage 7-9  1434 white prepupae new  1441 white prepupae 12hr  (1808) white prepupae 24hr  (1757) pupae 2d postWPP  (1821) pupae 3d postWPP  (1724) pupae 4d postWPP  (2828) adult male 01day  (2914) adult male 05day  (3349) adult male 30day  (3359) adult female 01day  (1520) adult female 05day    1298 adult female 30day    1274 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1260 embryo 02-04hr    432 embryo 04-06hr    276 embryo 06-08hr    564 embryo 08-10hr    695 embryo 10-12hr    907 embryo 12-14hr    826 embryo 14-16hr    1019 embryo 16-18hr    1312 embryo 18-20hr    1492 embryo 20-22hr    1304 embryo 22-24hr    1235 larva L1    1190 larva L2    918 larva L3 12hr old    1046 larva L3 puffstage 1-2    832 larva L3 puffstage 3-6    1203 larva L3 puffstage 7-9    1434 white prepupae new    1441 white prepupae 12hr    1808 white prepupae 24hr    1757 pupae 2d postWPP    1821 pupae 3d postWPP    1724 pupae 4d postWPP    2828 adult male 01day    2914 adult male 05day    3349 adult male 30day    3359 adult female 01day    1520 adult female 05day    1298 adult female 30day    1274 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1260 embryo 02-04hr    432 embryo 04-06hr    276 embryo 06-08hr    564 embryo 08-10hr    695 embryo 10-12hr    907 embryo 12-14hr    826 embryo 14-16hr    1019 embryo 16-18hr    1312 embryo 18-20hr    1492 embryo 20-22hr    1304 embryo 22-24hr    1235 larva L1    1190 larva L2    918 larva L3 12hr old    1046 larva L3 puffstage 1-2    832 larva L3 puffstage 3-6    1203 larva L3 puffstage 7-9    1434 white prepupae new    1441 white prepupae 12hr    1808 white prepupae 24hr    1757 pupae 2d postWPP    1821 pupae 3d postWPP    1724 pupae 4d postWPP    2828 adult male 01day    2914 adult male 05day    3349 adult male 30day    3359 adult female 01day    1520 adult female 05day    1298 adult female 30day    1274 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0067783 expression level Developmental Stage   Expression Level embryo 00-02hr    1260 embryo 02-04hr    432 embryo 04-06hr    276 embryo 06-08hr    564 embryo 08-10hr    695 embryo 10-12hr    907 embryo 12-14hr    826 embryo 14-16hr    1019 embryo 16-18hr    1312 embryo 18-20hr    1492 embryo 20-22hr    1304 embryo 22-24hr    1235 larva L1    1190 larva L2    918 larva L3 12hr old    1046 larva L3 puffstage 1-2    832 larva L3 puffstage 3-6    1203 larva L3 puffstage 7-9    1434 white prepupae new    1441 white prepupae 12hr    1808 white prepupae 24hr    1757 pupae 2d postWPP    1821 pupae 3d postWPP    1724 pupae 4d postWPP    2828 adult male 01day    2914 adult male 05day    3349 adult male 30day    3359 adult female 01day    1520 adult female 05day    1298 adult female 30day    1274 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1260) embryo 02-04hr  (432) embryo 04-06hr  (276) embryo 06-08hr  (564) embryo 08-10hr  (695) embryo 10-12hr  (907) embryo 12-14hr  (826) embryo 14-16hr  (1019) embryo 16-18hr  (1312) embryo 18-20hr  (1492) embryo 20-22hr  (1304) embryo 22-24hr  (1235) larva L1  (1190) larva L2  (918) larva L3 12hr old  (1046) larva L3 puffstage 1-2  (832) larva L3 puffstage 3-6  (1203) larva L3 puffstage 7-9  (1434) white prepupae new  (1441) white prepupae 12hr  (1808) white prepupae 24hr  (1757) pupae 2d postWPP  (1821) pupae 3d postWPP  (1724) pupae 4d postWPP  (2828) adult male 01day  (2914) adult male 05day  (3349) adult male 30day  (3359) adult female 01day  (1520) adult female 05day  (1298) adult female 30day  (1274) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1260 embryo 02-04hr    432 embryo 04-06hr    276 embryo 06-08hr    564 embryo 08-10hr    695 embryo 10-12hr    907 embryo 12-14hr    826 embryo 14-16hr    1019 embryo 16-18hr    1312 embryo 18-20hr  1492 embryo 20-22hr    1304 embryo 22-24hr    1235 larva L1    1190 larva L2    918 larva L3 12hr old    1046 larva L3 puffstage 1-2    832 larva L3 puffstage 3-6    1203 larva L3 puffstage 7-9  1434 white prepupae new  1441 white prepupae 12hr  1808 white prepupae 24hr  1757 pupae 2d postWPP  1821 pupae 3d postWPP  1724 pupae 4d postWPP  (2828) adult male 01day  (2914) adult male 05day  (3349) adult male 30day  (3359) adult female 01day  1520 adult female 05day    1298 adult female 30day    1274 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1260 embryo 02-04hr    432 embryo 04-06hr    276 embryo 06-08hr    564 embryo 08-10hr    695 embryo 10-12hr    907 embryo 12-14hr    826 embryo 14-16hr    1019 embryo 16-18hr    1312 embryo 18-20hr    1492 embryo 20-22hr    1304 embryo 22-24hr    1235 larva L1    1190 larva L2    918 larva L3 12hr old    1046 larva L3 puffstage 1-2    832 larva L3 puffstage 3-6    1203 larva L3 puffstage 7-9    1434 white prepupae new    1441 white prepupae 12hr    1808 white prepupae 24hr    1757 pupae 2d postWPP    1821 pupae 3d postWPP    1724 pupae 4d postWPP    2828 adult male 01day    2914 adult male 05day    3349 adult male 30day    3359 adult female 01day    1520 adult female 05day    1298 adult female 30day    1274 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1260 embryo 02-04hr    432 embryo 04-06hr    276 embryo 06-08hr    564 embryo 08-10hr    695 embryo 10-12hr    907 embryo 12-14hr    826 embryo 14-16hr    1019 embryo 16-18hr    1312 embryo 18-20hr    1492 embryo 20-22hr    1304 embryo 22-24hr    1235 larva L1    1190 larva L2    918 larva L3 12hr old    1046 larva L3 puffstage 1-2    832 larva L3 puffstage 3-6    1203 larva L3 puffstage 7-9    1434 white prepupae new    1441 white prepupae 12hr    1808 white prepupae 24hr    1757 pupae 2d postWPP    1821 pupae 3d postWPP    1724 pupae 4d postWPP    2828 adult male 01day    2914 adult male 05day    3349 adult male 30day    3359 adult female 01day    1520 adult female 05day    1298 adult female 30day    1274 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0067783    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0067783 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, adult midgut, adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, adult female reproductive system, adult male reproductive system, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0067783 expression level Tissue   Expression Level Larval Central Nervous System    35.125 Larval Midgut    60.7 Larval Hindgut    55.1 Larval Malpighian Tubules    181.9 Larval Fat Body    221.5 Larval Salivary Gland    39.7 Larval Trachea    41.925 Larval Carcass    67.8 Adult Head    152.8 Adult Eye    110.6 Adult Brain    175.4 Adult Thoracic-Abdominal Ganglion    166.2 Adult Crop    108.7 Adult Midgut    123.4 Adult Hindgut    146.7 Adult Malpighian Tubules    231.3 Adult Fat Body    150.3 Adult Salivary Gland    202.7 Adult Heart    159.275 Adult VirginFemale Spermatheca    126 Adult InseminatedFemale Spermatheca    93.3 Adult Ovary    104.4 Adult Testis    378 Adult Male Accessory Gland    106.9 Adult Carcass    228.1 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    35.125 Larval Midgut    60.7 Larval Hindgut    55.1 Larval Malpighian Tubules    181.9 Larval Fat Body    221.5 Larval Salivary Gland    39.7 Larval Trachea    41.925 Larval Carcass    67.8 Adult Head    152.8 Adult Eye    110.6 Adult Brain    175.4 Adult Thoracic-Abdominal Ganglion    166.2 Adult Crop    108.7 Adult Midgut    123.4 Adult Hindgut    146.7 Adult Malpighian Tubules    231.3 Adult Fat Body    150.3 Adult Salivary Gland    202.7 Adult Heart    159.275 Adult VirginFemale Spermatheca    126 Adult InseminatedFemale Spermatheca    93.3 Adult Ovary    104.4 Adult Testis    378 Adult Male Accessory Gland    106.9 Adult Carcass    228.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    35.125 Larval Midgut    60.7 Larval Hindgut    55.1 Larval Malpighian Tubules    181.9 Larval Fat Body    221.5 Larval Salivary Gland    39.7 Larval Trachea    41.925 Larval Carcass    67.8 Adult Head    152.8 Adult Eye    110.6 Adult Brain    175.4 Adult Thoracic-Abdominal Ganglion    166.2 Adult Crop    108.7 Adult Midgut    123.4 Adult Hindgut    146.7 Adult Malpighian Tubules    231.3 Adult Fat Body    150.3 Adult Salivary Gland    202.7 Adult Heart    159.275 Adult VirginFemale Spermatheca    126 Adult InseminatedFemale Spermatheca    93.3 Adult Ovary    104.4 Adult Testis    378 Adult Male Accessory Gland    106.9 Adult Carcass    228.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    35.125 Larval Midgut    60.7 Larval Hindgut    55.1 Larval Malpighian Tubules    181.9 Larval Fat Body    221.5 Larval Salivary Gland    39.7 Larval Trachea    41.925 Larval Carcass    67.8 Adult Head    152.8 Adult Eye    110.6 Adult Brain    175.4 Adult Thoracic-Abdominal Ganglion    166.2 Adult Crop    108.7 Adult Midgut    123.4 Adult Hindgut    146.7 Adult Malpighian Tubules    231.3 Adult Fat Body    150.3 Adult Salivary Gland    202.7 Adult Heart    159.275 Adult VirginFemale Spermatheca    126 Adult InseminatedFemale Spermatheca    93.3 Adult Ovary    104.4 Adult Testis    378 Adult Male Accessory Gland    106.9 Adult Carcass    228.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0067783 expression level Tissue   Expression Level Larval Central Nervous System    35.125 Larval Midgut    60.7 Larval Hindgut    55.1 Larval Malpighian Tubules    181.9 Larval Fat Body    221.5 Larval Salivary Gland    39.7 Larval Trachea    41.925 Larval Carcass    67.8 Adult Head    152.8 Adult Eye    110.6 Adult Brain    175.4 Adult Thoracic-Abdominal Ganglion    166.2 Adult Crop    108.7 Adult Midgut    123.4 Adult Hindgut    146.7 Adult Malpighian Tubules    231.3 Adult Fat Body    150.3 Adult Salivary Gland    202.7 Adult Heart    159.275 Adult VirginFemale Spermatheca    126 Adult InseminatedFemale Spermatheca    93.3 Adult Ovary    104.4 Adult Testis    378 Adult Male Accessory Gland    106.9 Adult Carcass    228.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    35.125 Larval Midgut    60.7 Larval Hindgut    55.1 Larval Malpighian Tubules    181.9 Larval Fat Body    221.5 Larval Salivary Gland    39.7 Larval Trachea    41.925 Larval Carcass    67.8 Adult Head    152.8 Adult Eye    110.6 Adult Brain    175.4 Adult Thoracic-Abdominal Ganglion    166.2 Adult Crop    108.7 Adult Midgut    123.4 Adult Hindgut    146.7 Adult Malpighian Tubules    231.3 Adult Fat Body    150.3 Adult Salivary Gland    202.7 Adult Heart    159.275 Adult VirginFemale Spermatheca    126 Adult InseminatedFemale Spermatheca    93.3 Adult Ovary    104.4 Adult Testis    378 Adult Male Accessory Gland    106.9 Adult Carcass    228.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    35.125 Larval Midgut    60.7 Larval Hindgut    55.1 Larval Malpighian Tubules    181.9 Larval Fat Body    221.5 Larval Salivary Gland    39.7 Larval Trachea    41.925 Larval Carcass    67.8 Adult Head    152.8 Adult Eye    110.6 Adult Brain    175.4 Adult Thoracic-Abdominal Ganglion    166.2 Adult Crop    108.7 Adult Midgut    123.4 Adult Hindgut    146.7 Adult Malpighian Tubules    231.3 Adult Fat Body    150.3 Adult Salivary Gland    202.7 Adult Heart    159.275 Adult VirginFemale Spermatheca    126 Adult InseminatedFemale Spermatheca    93.3 Adult Ovary    104.4 Adult Testis    378 Adult Male Accessory Gland    106.9 Adult Carcass    228.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    35.125 Larval Midgut    60.7 Larval Hindgut    55.1 Larval Malpighian Tubules    181.9 Larval Fat Body    221.5 Larval Salivary Gland    39.7 Larval Trachea    41.925 Larval Carcass    67.8 Adult Head    152.8 Adult Eye    110.6 Adult Brain    175.4 Adult Thoracic-Abdominal Ganglion    166.2 Adult Crop    108.7 Adult Midgut    123.4 Adult Hindgut    146.7 Adult Malpighian Tubules    231.3 Adult Fat Body    150.3 Adult Salivary Gland    202.7 Adult Heart    159.275 Adult VirginFemale Spermatheca    126 Adult InseminatedFemale Spermatheca    93.3 Adult Ovary    104.4 Adult Testis    378 Adult Male Accessory Gland    106.9 Adult Carcass    228.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    152.8   NA  Eye    110.6   NA  Brain    175.4   35.125  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    166.2   NA  Crop    108.7   60.7  Midgut    123.4   55.1  Hindgut    146.7   181.9  Malpighian Tubules    231.3   221.5  Fat Body    150.3   39.7  Salivary Gland    202.7   NA  Heart    159.275   41.925  Trachea    NA   NA  VirginFemale Spermatheca    126   NA  InseminatedFemale Spermatheca    93.3   NA  Ovary    104.4   NA  Testis    378   NA  Male Accessory Gland    106.9   67.8  Carcass    228.1 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_10
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0067783 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4241-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 4 )
For All Classical Alleles Show
Allele of att-ORFA Class Mutagen Stocks Known lesion att-ORFAe03144 piggyBac transposase 2 Yes att-ORFAe01697 piggyBac transposase 1 -- att-ORFAEY11237 P-element activity 1 -- att-ORFAC861 0 Yes
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of att-ORFA Class Mutagen Stocks Known lesion att-ORFAKK109328 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{KK109328} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}att-ORFAEY11237 NA P{GSV1}CG5180C861 NA miscellaneous insertions PBac{RB}att-ORFAe01697 NA PBac{RB}att-ORFAe03144 NA
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 6 terms )
Molecular Function
CV term Evidence References
binding inferred from electronic annotation with InterPro:IPR002067 (FlyBase Curators et al., 2004-) transmembrane transporter activity inferred from sequence or structural similarity (Nelson, 2000.4.10) inferred from sequence or structural similarity with UniProtKB:P38702 (FlyBase, 1992-)
Biological Process
CV term Evidence References
transmembrane transport inferred from electronic annotation with InterPro:IPR002067 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
integral to membrane inferred from sequence model (Madigan et al., 1996) mitochondrial envelope inferred from sequence or structural similarity (Nelson, 2000.4.10) inferred from sequence or structural similarity with UniProtKB:P38702 (FlyBase, 1992-) mitochondrial inner membrane inferred from electronic annotation with InterPro:IPR002067, InterPro:IPR002167 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	gene_with_recoded_mRNA (Madigan et al., 1996) nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions att-ORFA allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0067783 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42429
Orthologs
Genome-wide drosophilid orthologs	Dana\GF23201 Dere\GG15401 Dgri\GH14166 Dmoj\GI10537 Dper\GL13935 Dpse\GA18055 Dsec\GM23186 Dsim\GD20059 Dvir\GJ24190 Dwil\GK22721 Dyak\GE25066
Curated drosophilid orthologs	Dpse\GA18055
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL014753-PA Aedes aegypti (mosquito) AGAP000097-PA Anopheles gambiae (mosquito) XP_396993.3 Apis mellifera (honey bee) XP_001945408.1 Acyrthosiphon pisum (pea aphid) At4g26180.1 Arabidopsis thaliana (wall cress) 13935 Batrachochytrium dendrobatidis (chytrid fungus) 282150 Branchiostoma floridae (lancelet) 94262 Branchiostoma floridae (lancelet) XP_001897134.1 Brugia malayi (roundworm nematode) BGIBMGA001712-PA Bombyx mori (silk worm) ENSBTAP00000052766 Bos taurus (bovine) CAL0005284 Candida albicans (a form of yeast) CN30955 Caenorhabditis brenneri (small nematode) CBP17529 Caenorhabditis briggsae (nematode) CE10358 Caenorhabditis elegans (worm) ENSCAFP00000021233 Canis familiaris (dog) CAGL0K02915g Candida glabrata (haploid yeast) ENSCINP00000003297 Ciona intestinalis (sea squirt) CMO303C Cyanidioschyzon merolae (red alga) cn09333 Cryptococcus neoformans (yeast-like fungus) CPIJ016473 Culex pipens (mosquito) ENSCPOP00000011783 Cavia porcellus (guinea pig) RP22172 Caenorhabditis remanei (nematode) ENSCSAVP00000000384 Ciona savignyi (sedentary tunicate) 90574 Capitella spl (polychaete worm) DDB0234093 Dictyostelium discoideum (amoeba) DEHA2A07260g Debaryomyces Hansenii (yeast) DEHA2C16302g Debaryomyces Hansenii (yeast) 129893 Daphnia pulex (daphnia) ENSDARP00000089333 Danio rerio (zebra fish) ENSECAP00000009248 Equus caballus (horse) XP_649800 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000020032 Gymnopilus aculeatus (mushroom) ENSGALP00000004118 Gallus gallus (chicken) 186288 Hypsipyla robusta (cedar shoot borer) ENSP00000326693 Homo sapiens (human) ISCW008998-PA Ixodes scapularis (deer tick) KLLA0E18701g Kluyveromyces lactis (yeast) 224744 Lottia gigantea (owl limpet) 32514 Monocosta brevicollis (choanoflagellate) ENSMODP00000004974 Monodelphis domestica (gray opossum) ENSMMUP00000025842 Macaca mulatta (rhesus monkey) ENSMUSP00000105754 Mus musculus (house mouse) 210265 Nematostella vectensis (starlet anemone) XP_001607039.1 Nasonia vitripennis (wasp) ENSOANP00000001644 Ornithorynchus anatinus (platypus) ENSORLP00000019372 Oryzias latipes (japanese killifish) LOC_Os01g38990.1 Oryza sativa (asian rice) 4113 Ostreococcus tauri (green alga) PHUM001920-PA Pediculus humanus (human body louse) 152223 Physcomitrella patens (moss) ENSPPYP00000010930 Pongo pygmaeus (orangutan) 113170 Phytophthora sojae (root rot pathogen) 416317 Populus trichocarpa (black cottonwood) ENSPTRP00000018307 Pan troglodytes (chimpanzee) ENSRNOP00000027615 Rattus norvegicus (norway rat) 4752253 Sorghum bicolor (sorghum) YHR002W Saccharomyces cerevisiae (budding yeast) Smp_142930 Schistosoma mansoni (trematode parasite) SPAC17H9.08 Schizosaccharomyces pombe (fission yeast) XP_001194433.1 Strongylocentrotus purpuratus (purple sea urchin) 23427 Trichoplax adhaerens (metazoa) XP_969629.1 Tribolium castaneum (red flour beetle) ENSTNIP00000018369 Tetraodon nigroviridis (green spotted pufferfish) 31076 Thalassiosira pseudonana (marine diatom) ENSTRUP00000046428 Takifugu rubripes (pufferfish Takifugu) 88271.m00409 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000031355 Xenopus tropicalis (frog) YALI0F01430g Yarrowia lipolytica (nonconventional yeast) YALI0F15433g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB11350 NV10244 LH11984 ISCW008998 FBgn0242154 FBgn0224698 FBgn0211273 FBgn0191540 FBgn0178053 JGI_V11_129893 FBgn0133301 FBgn0121642 FBgn0107652 FBgn0100195 CPIJ016473 BGIBMGA001712 ACYPI005260 ACYPI004852 ACYPI000634 GB17734 AGAP000097 AAEL014753 PHUM174020 GLEAN_13217
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	18121 w1118; PBac{RB}att-ORFAe03144 att-ORFBe03144/TM6B, Tb1 20669 y1 w67c23; P{EPgy2}att-ORFAEY11237/TM3, Sb1 Ser1
Harvard	- PBac{RB}att-ORFAe01697 - PBac{RB}att-ORFAe03144
VDRC	v101378 P{KK109328}VIE-260B
Genomic Clones ( 2 )
	BACR10P06 BACR13J19 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 34 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT07308 RE52377
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT07780 AT13684 AT14684 AT20145 AT22127 AT25941 GM27292 RE18935 RE59401 RE74275 SD25808
Other clones	10219 14767 28679 29326 79263 84287 100431 101443 178475 CK01.55C.B8 CK01.88B.B12 EK044840 EK069638 EK117648 EK136524 EK137116 EK219029 EK223129 EK228317 EK283626 EP11761
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0067783 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42429
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	The relationship between the "att" locus (encoding att-ORFA and att-ORFB), l(3)92Ea and l(3)92Eb is unclear. (Madigan et al., 1996)
Other Comments
	Annotation CG4241 represents the att-ORFA open reading frame. (FlyBase Genome Annotators, 2004) The "att" locus is alternatively expressed at both the RNA and protein levels. The locus encodes RNAs expressed in the soma and a testis specific RNA. The somatic RNAs encode a protein (att-ORFA) with homology to the mammalian Graves' disease carrier proteins. The testis RNA encodes two different proteins from two reading frames. One of these initiates at a CUG codon and represents an N-terminally truncated version of the protein encoded by the somatic RNAs (att-ORFA). The other protein (att-ORFB) initiates at an AUG codon in testis-specific exon 3 (in a different frame from att-ORFA) and is completely novel. Overall orientation not stated: anon-92Ee+ att-ORFA+ anon-92Ef? (Madigan et al., 1996)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_142634 NM_169901 NM_206522 RefSeq (Proteins) • NP_650891 NP_732519 NP_996244 DDBJ / EMBL / GenBank • AAF55774 AAN14352 AAS65181 AAX33412 BI354566 BT021264 CL868485 CZ479508 CZ480909 Entrez Gene - A searchable database of RefSeq genes. • 42429 UniProtKB/TrEMBL • Q8IN53 Q9VDL7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Mitochondrial carrier protein (IPR002067) Graves disease carrier protein (IPR002167) Mitochondrial carrier domain (IPR023395) Mitochondrial substrate/solute carrier (IPR018108)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0067783 DRSC - Results from RNAi screens. • FBgn0067783 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0067783 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4241-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0067783 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42429 InParanoid A subset of ortholog calls from InParanoid. • AAEL014753-PA Aedes aegypti (mosquito) AGAP000097-PA Anopheles gambiae (mosquito) XP_396993.3 Apis mellifera (honey bee) XP_001945408.1 Acyrthosiphon pisum (pea aphid) At4g26180.1 Arabidopsis thaliana (wall cress) 13935 Batrachochytrium dendrobatidis (chytrid fungus) 282150 Branchiostoma floridae (lancelet) 94262 Branchiostoma floridae (lancelet) XP_001897134.1 Brugia malayi (roundworm nematode) BGIBMGA001712-PA Bombyx mori (silk worm) ENSBTAP00000052766 Bos taurus (bovine) CAL0005284 Candida albicans (a form of yeast) CN30955 Caenorhabditis brenneri (small nematode) CBP17529 Caenorhabditis briggsae (nematode) CE10358 Caenorhabditis elegans (worm) ENSCAFP00000021233 Canis familiaris (dog) CAGL0K02915g Candida glabrata (haploid yeast) ENSCINP00000003297 Ciona intestinalis (sea squirt) CMO303C Cyanidioschyzon merolae (red alga) cn09333 Cryptococcus neoformans (yeast-like fungus) CPIJ016473 Culex pipens (mosquito) ENSCPOP00000011783 Cavia porcellus (guinea pig) RP22172 Caenorhabditis remanei (nematode) ENSCSAVP00000000384 Ciona savignyi (sedentary tunicate) 90574 Capitella spl (polychaete worm) DDB0234093 Dictyostelium discoideum (amoeba) DEHA2A07260g Debaryomyces Hansenii (yeast) DEHA2C16302g Debaryomyces Hansenii (yeast) 129893 Daphnia pulex (daphnia) ENSDARP00000089333 Danio rerio (zebra fish) ENSECAP00000009248 Equus caballus (horse) XP_649800 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000020032 Gymnopilus aculeatus (mushroom) ENSGALP00000004118 Gallus gallus (chicken) 186288 Hypsipyla robusta (cedar shoot borer) ENSP00000326693 Homo sapiens (human) ISCW008998-PA Ixodes scapularis (deer tick) KLLA0E18701g Kluyveromyces lactis (yeast) 224744 Lottia gigantea (owl limpet) 32514 Monocosta brevicollis (choanoflagellate) ENSMODP00000004974 Monodelphis domestica (gray opossum) ENSMMUP00000025842 Macaca mulatta (rhesus monkey) ENSMUSP00000105754 Mus musculus (house mouse) 210265 Nematostella vectensis (starlet anemone) XP_001607039.1 Nasonia vitripennis (wasp) ENSOANP00000001644 Ornithorynchus anatinus (platypus) ENSORLP00000019372 Oryzias latipes (japanese killifish) LOC_Os01g38990.1 Oryza sativa (asian rice) 4113 Ostreococcus tauri (green alga) PHUM001920-PA Pediculus humanus (human body louse) 152223 Physcomitrella patens (moss) ENSPPYP00000010930 Pongo pygmaeus (orangutan) 113170 Phytophthora sojae (root rot pathogen) 416317 Populus trichocarpa (black cottonwood) ENSPTRP00000018307 Pan troglodytes (chimpanzee) ENSRNOP00000027615 Rattus norvegicus (norway rat) 4752253 Sorghum bicolor (sorghum) YHR002W Saccharomyces cerevisiae (budding yeast) Smp_142930 Schistosoma mansoni (trematode parasite) SPAC17H9.08 Schizosaccharomyces pombe (fission yeast) XP_001194433.1 Strongylocentrotus purpuratus (purple sea urchin) 23427 Trichoplax adhaerens (metazoa) XP_969629.1 Tribolium castaneum (red flour beetle) ENSTNIP00000018369 Tetraodon nigroviridis (green spotted pufferfish) 31076 Thalassiosira pseudonana (marine diatom) ENSTRUP00000046428 Takifugu rubripes (pufferfish Takifugu) 88271.m00409 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000031355 Xenopus tropicalis (frog) YALI0F01430g Yarrowia lipolytica (nonconventional yeast) YALI0F15433g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42429 modMine - Data generated by the modENCODE project. • FBgn0067783 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB11350 NV10244 LH11984 ISCW008998 FBgn0242154 FBgn0224698 FBgn0211273 FBgn0191540 FBgn0178053 JGI_V11_129893 FBgn0133301 FBgn0121642 FBgn0107652 FBgn0100195 CPIJ016473 BGIBMGA001712 ACYPI005260 ACYPI004852 ACYPI000634 GB17734 AGAP000097 AAEL014753 PHUM174020 GLEAN_13217
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	att (Madigan et al., 1996, Molnar et al., 2006) att-ORFA (Wasbrough et al., 2010) CG4241 (Egli et al., 2006, Molnar et al., 2006, Teleman et al., 2008, Keleman et al., 2009.8.5, Cronin et al., 2009) unnamed (Madigan et al., 1996)
Name Synonym	alternative testis transcripts (Madigan et al., 1996) alternative testis transcripts open reading frame A
Secondary FlyBase IDs
	FBgn0019839 FBgn0038801
References ( 21 )
Generate a list of	All references relating to this gene ( 21 )
List References by type	Research paper  ( 6 ) Supplementary material  ( 2 ) Personal communication to FlyBase  ( 5 ) FlyBase analysis  ( 3 ) Computer file  ( 3 ) Automatic genome annotation  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 1 )
	Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Show all research papers ...