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Gene Dmel\tmod

General Information
Symbol	Dmel\tmod	Species	D. melanogaster
Name	tropomodulin	Annotation symbol	CG1539
Feature type	protein_coding_gene	FlyBase ID	FBgn0082582
Gene Model Status	Current	Stock availability	16 publicly available
Also Known As	spdo, l(3)00848
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	99F7-99F8	Sequence location	3R:26,358,336..26,404,627 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene tropomodulin is referred to in FlyBase by the symbol Dmel\tmod (CG1539, FBgn0082582). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: actin binding. Based on sequence similarity, it is predicted to be involved in the biological process: cytoskeleton organization. 28 alleles are reported. The phenotypes of these alleles are annotated with: striated muscle thin filament; indirect flight muscle. It has 15 annotated transcripts and 15 annotated polypeptides. Protein features are: Tropomodulin. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult eye, larval central nervous system, adult crop, larval hindgut, larval Malpighian tubules, adult heart, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult central nervous system, larval/adult midgut, adult hindgut, adult Malpighian tubules, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult testis. Gene sequence location is 3R:26358336..26404627.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	References Knowles-Barley, 2011.8.24, BrainTrap expression curation. Bellen, 2011.9.26, MI948.xml Alleles tmod[MI02468] Insertions Mi{MIC}tmod[MI02468]
FB2012_01	References Reis et al., 2010, PLoS Genet. 6(11): e1001206 Carreira et al., 2011, BMC Dev. Biol. 11: 32 Sequence features HFA13993 BKN28701 HFA17062 HFA15076 HFA14314
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 99F7-99F8   Limits computationally determined from genome sequence between P{PZ}ncd05884 and P{lacW}l(3)s2500s2500
Experimentally Determined Cytological Location
Cytogenetic map Notes References 99F10-99F11   (determined by in situ hybridisation)   (Spradling et al., 1999) 99F6-99F9   (determined by in situ hybridisation)   (Dye et al., 1998)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\tmod for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Alternative translation stop created by use of multiphasic reading frames within coding region.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) tmod-RA FBtr0085662  NM_057683   2545   367 tmod-RB FBtr0085663  NM_057684   2508   403 tmod-RC FBtr0085661  NM_170506   2716   409 tmod-RD FBtr0085659  NM_170503   2860   439 tmod-RE FBtr0085658  NM_170504   2678   439 tmod-RF FBtr0085660  NM_170505   2724   439 tmod-RG FBtr0113483  NM_001104512   3185   526 tmod-RH FBtr0302110  NM_001170304   2481   372 tmod-RI FBtr0302111  NM_001170305   2713   439 tmod-RJ FBtr0302112  NM_001170306   2753   409 tmod-RK FBtr0302600  NM_001202390   3232   424 tmod-RL FBtr0302601  NM_001202391   2655   439 tmod-RM FBtr0306685     2292   449 tmod-RN FBtr0306686     2652   567 tmod-RO FBtr0306687     3453   424
Additional Transcript Data & Comments
Reported size (kB)	7.9, 7.3, 5.8, 3.6, 3.1, 2.7 (northern blot) (Dye et al., 1998)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein tmod-PA   FBpp0085024   41.4   367   4.83     NP_477031   AAF57066 tmod-PB   FBpp0085025   45.5   403   5.86     NP_477032   AAF57067 tmod-PC   FBpp0085023   46.2   409   4.80     NP_733385   AAF57065 tmod-PD   FBpp0085021   49.4   439   4.54     NP_733382   AAF57064 tmod-PE   FBpp0085020   49.4   439   4.54     NP_733383   AAN14242 tmod-PF   FBpp0085022   49.4   439   4.54     NP_733384   AAN14243 tmod-PG   FBpp0112393   58.8   526   4.33     NP_001097982   ABW08810 tmod-PH   FBpp0291320   41.9   372   4.78     NP_001163775   ACZ95069 tmod-PI   FBpp0291321   49.4   439   4.54     NP_001163776   ACZ95070 tmod-PJ   FBpp0291322   46.2   409   4.80     NP_001163777   ACZ95071 tmod-PK   FBpp0291756   48.2   424   4.86     NP_001189319   ADV37409 tmod-PL   FBpp0291757   49.4   439   4.54     NP_001189320   ADV37410 tmod-PM   FBpp0297624   50.5   449   4.54       tmod-PN   FBpp0297625   63.4   567   4.52       tmod-PO   FBpp0297626   48.2   424   4.86
Additional Polypeptide Data & Comments
Reported size (kDa)	367 (aa) (Dye et al., 1998) 367, 45 (aa); 403, 43 (kD) (Mardahl-Dumesnil and Fowler, 2001)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Tropomodulin (IPR004934)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA264337   AA697437   AE014297 AAF57064   AE014297 AAF57065   AE014297 AAF57066   AE014297 AAF57067   AE014297 AAN14242   AE014297 AAN14243   AE014297 ABW08810   AC008299   AE014297 ACZ95069   AE014297 ACZ95070   AE014297 ACZ95071   AE014297 ADV37409   AE014297 ADV37410   AI293895   AI295112   AI403765   AQ034044   AW940897   AY094727 AAM11080   BI172373   BI227695   BI227923   BI234685   BI484373   BI487096   BI567294   BI568234   BI576568   BI578376   BI592821   BI608899   BI613155   BI613379   BI614607   BI625288   BI627620   BI634976   BP558736   BT014640   BT072890   BT099547   BT099728   BT099746   BT100046   BT120257   CO185323   CO185722   CO187691   CO188746   CO190680   CO263220   CO263669   CO265092   CO277669   CO278390   CO281711   CO282626   CO286769   CO292633   CO296081   CO299906   CO299911   CO304670   CO305283   CO305728   CO306451   CO309422   CO314435   CO314789   CO315136   CO321243   CO323186   CO324830   CO325974   CO326063   CO331033   CO333261   CO339423   CO342150   CZ467313   CZ467324   CZ468708   CZ470564   CZ478701   CZ483140   CZ486118   CZ487584   CZ488298   EC056964   EC057770   EC065819   EC068419   EC069534   EC070811   EC072776   EC073759   EC075693   EC079838   EC080013   EC080912   EC084087   EC085041   EC086565   EC091138   EC200695   EC203466   EC211118   EC214349   EC215339   EC216405   EC225826   EC226873   EC228300   EC233161   EC235299   EC236430   EC242665   EC242739   EC244221   EC244364   EC254357   EC256730   EC256791   EV594197   EV596590   GH953794   GH954605   GH965368   GH967465   U92490 AAC04506
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	O46231 Q9VA56 Q9VA58 Q9VA59 A8JRH3 E1JJ21
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage     (Dye et al., 1998) embryonic stage 9 -- 17   presumptive embryonic/larval central nervous system | precursor   (Dye et al., 1998) embryonic stage 12 -- 17   presumptive embryonic/larval peripheral nervous system   (Dye et al., 1998) embryonic stage 14 -- 16   trichogen cell   (Dye et al., 1998) tormogen cell   (Dye et al., 1998) northern blot Stage Tissue/Position (including subcellular localization) Reference embryonic stage -- adult stage     (Dye et al., 1998) embryonic stage 13 -- adult stage     (Dye et al., 1998) Comment:reference states expression starts at 9-12 hr AEL larval stage -- pupal stage     (Dye et al., 1998) larval stage -- adult stage     (Dye et al., 1998) pupal stage     (Dye et al., 1998)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
immunolocalization Stage Tissue/Position (including subcellular localization) Reference adult stage   muscle cell   • myofibril (Mardahl-Dumesnil and Fowler, 2001) Comment:post-eclosion day 1 mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011) western blot Stage Tissue/Position (including subcellular localization) Reference embryonic stage -- adult stage     (Mardahl-Dumesnil and Fowler, 2001) pupal stage   muscle cell   • myofibril (Mardahl-Dumesnil and Fowler, 2001) pupal stage & adult stage   muscle cell   • striated muscle thin filament (Mardahl-Dumesnil and Fowler, 2001) adult stage   indirect flight muscle   (Mardahl-Dumesnil and Fowler, 2001) muscle cell   • striated muscle thin filament (Mardahl-Dumesnil and Fowler, 2001) adult thorax   (Mardahl-Dumesnil and Fowler, 2001) adult head   (Mardahl-Dumesnil and Fowler, 2001) adult abdomen   (Mardahl-Dumesnil and Fowler, 2001)   (Mardahl-Dumesnil and Fowler, 2001) adult stage | male     (Mardahl-Dumesnil and Fowler, 2001) adult stage | female     (Mardahl-Dumesnil and Fowler, 2001)
Additional Descriptive Data
	The small spdo isoform was detected at all developmental stages tested. In adults, it was enriched in the head and abdomen. The 43kD isoform is the only form detected in myofibrils in pupae, where it is associated with the pointed ends of thin filaments. It is still detected in day 1 adults. (Mardahl-Dumesnil and Fowler, 2001) The 45kD spdo isoform is detected in adult flies, where it is enriched in thoraces and dissected IFM. The 45kD spdo isoform is not detected until 8-12hr after eclosion but is the major form in 2 day adults. It is associated with the thin filament pointed ends. (Mardahl-Dumesnil and Fowler, 2001)
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0082582    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0082582 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed at stages throughout the pupal period. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0082582 expression level Developmental Stage   Expression Level embryo 00-02hr    717 embryo 02-04hr    1088 embryo 04-06hr    2245 embryo 06-08hr    1994 embryo 08-10hr    2342 embryo 10-12hr    3467 embryo 12-14hr    4379 embryo 14-16hr    3355 embryo 16-18hr    3868 embryo 18-20hr    3479 embryo 20-22hr    3534 embryo 22-24hr    4588 larva L1    2442 larva L2    2264 larva L3 12hr old    2072 larva L3 puffstage 1-2    1825 larva L3 puffstage 3-6    2825 larva L3 puffstage 7-9    4830 white prepupae new    9480 white prepupae 12hr    17614 white prepupae 24hr    14895 pupae 2d postWPP    11273 pupae 3d postWPP    5960 pupae 4d postWPP    8372 adult male 01day    7294 adult male 05day    3510 adult male 30day    2166 adult female 01day    4416 adult female 05day    1178 adult female 30day    961 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (717) embryo 02-04hr  (1088) embryo 04-06hr  (2245) embryo 06-08hr  (1994) embryo 08-10hr  (2342) embryo 10-12hr  (3467) embryo 12-14hr  (4379) embryo 14-16hr  (3355) embryo 16-18hr  (3868) embryo 18-20hr  (3479) embryo 20-22hr  (3534) embryo 22-24hr  (4588) larva L1  (2442) larva L2  (2264) larva L3 12hr old  (2072) larva L3 puffstage 1-2  (1825) larva L3 puffstage 3-6  (2825) larva L3 puffstage 7-9  (4830) white prepupae new  (9480) white prepupae 12hr  (17614) white prepupae 24hr  (14895) pupae 2d postWPP  (11273) pupae 3d postWPP  (5960) pupae 4d postWPP  (8372) adult male 01day  (7294) adult male 05day  (3510) adult male 30day  (2166) adult female 01day  (4416) adult female 05day  (1178) adult female 30day  (961) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    717 embryo 02-04hr    1088 embryo 04-06hr  (2245) embryo 06-08hr  (1994) embryo 08-10hr  (2342) embryo 10-12hr  (3467) embryo 12-14hr  (4379) embryo 14-16hr  (3355) embryo 16-18hr  (3868) embryo 18-20hr  (3479) embryo 20-22hr  (3534) embryo 22-24hr  (4588) larva L1  (2442) larva L2  (2264) larva L3 12hr old  (2072) larva L3 puffstage 1-2  (1825) larva L3 puffstage 3-6  (2825) larva L3 puffstage 7-9  (4830) white prepupae new  (9480) white prepupae 12hr  (17614) white prepupae 24hr  (14895) pupae 2d postWPP  (11273) pupae 3d postWPP  (5960) pupae 4d postWPP  (8372) adult male 01day  (7294) adult male 05day  (3510) adult male 30day  (2166) adult female 01day  (4416) adult female 05day    1178 adult female 30day    961 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    717 embryo 02-04hr    1088 embryo 04-06hr    2245 embryo 06-08hr    1994 embryo 08-10hr    2342 embryo 10-12hr    3467 embryo 12-14hr    4379 embryo 14-16hr    3355 embryo 16-18hr    3868 embryo 18-20hr    3479 embryo 20-22hr    3534 embryo 22-24hr    4588 larva L1    2442 larva L2    2264 larva L3 12hr old    2072 larva L3 puffstage 1-2    1825 larva L3 puffstage 3-6    2825 larva L3 puffstage 7-9    4830 white prepupae new    9480 white prepupae 12hr  (17614) white prepupae 24hr  (14895) pupae 2d postWPP  (11273) pupae 3d postWPP    5960 pupae 4d postWPP    8372 adult male 01day    7294 adult male 05day    3510 adult male 30day    2166 adult female 01day    4416 adult female 05day    1178 adult female 30day    961 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    717 embryo 02-04hr    1088 embryo 04-06hr    2245 embryo 06-08hr    1994 embryo 08-10hr    2342 embryo 10-12hr    3467 embryo 12-14hr    4379 embryo 14-16hr    3355 embryo 16-18hr    3868 embryo 18-20hr    3479 embryo 20-22hr    3534 embryo 22-24hr    4588 larva L1    2442 larva L2    2264 larva L3 12hr old    2072 larva L3 puffstage 1-2    1825 larva L3 puffstage 3-6    2825 larva L3 puffstage 7-9    4830 white prepupae new    9480 white prepupae 12hr    17614 white prepupae 24hr    14895 pupae 2d postWPP    11273 pupae 3d postWPP    5960 pupae 4d postWPP    8372 adult male 01day    7294 adult male 05day    3510 adult male 30day    2166 adult female 01day    4416 adult female 05day    1178 adult female 30day    961 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0082582 expression level Developmental Stage   Expression Level embryo 00-02hr    717 embryo 02-04hr    1088 embryo 04-06hr    2245 embryo 06-08hr    1994 embryo 08-10hr    2342 embryo 10-12hr    3467 embryo 12-14hr    4379 embryo 14-16hr    3355 embryo 16-18hr    3868 embryo 18-20hr    3479 embryo 20-22hr    3534 embryo 22-24hr    4588 larva L1    2442 larva L2    2264 larva L3 12hr old    2072 larva L3 puffstage 1-2    1825 larva L3 puffstage 3-6    2825 larva L3 puffstage 7-9    4830 white prepupae new    9480 white prepupae 12hr    17614 white prepupae 24hr    14895 pupae 2d postWPP    11273 pupae 3d postWPP    5960 pupae 4d postWPP    8372 adult male 01day    7294 adult male 05day    3510 adult male 30day    2166 adult female 01day    4416 adult female 05day    1178 adult female 30day    961 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (717) embryo 02-04hr  (1088) embryo 04-06hr  (2245) embryo 06-08hr  (1994) embryo 08-10hr  (2342) embryo 10-12hr  (3467) embryo 12-14hr  (4379) embryo 14-16hr  (3355) embryo 16-18hr  (3868) embryo 18-20hr  (3479) embryo 20-22hr  (3534) embryo 22-24hr  (4588) larva L1  (2442) larva L2  (2264) larva L3 12hr old  (2072) larva L3 puffstage 1-2  (1825) larva L3 puffstage 3-6  (2825) larva L3 puffstage 7-9  (4830) white prepupae new  (9480) white prepupae 12hr  (17614) white prepupae 24hr  (14895) pupae 2d postWPP  (11273) pupae 3d postWPP  (5960) pupae 4d postWPP  (8372) adult male 01day  (7294) adult male 05day  (3510) adult male 30day  (2166) adult female 01day  (4416) adult female 05day  (1178) adult female 30day  (961) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    717 embryo 02-04hr    1088 embryo 04-06hr  2245 embryo 06-08hr  1994 embryo 08-10hr  2342 embryo 10-12hr  (3467) embryo 12-14hr  (4379) embryo 14-16hr  (3355) embryo 16-18hr  (3868) embryo 18-20hr  (3479) embryo 20-22hr  (3534) embryo 22-24hr  (4588) larva L1  2442 larva L2  2264 larva L3 12hr old  2072 larva L3 puffstage 1-2  1825 larva L3 puffstage 3-6  (2825) larva L3 puffstage 7-9  (4830) white prepupae new  (9480) white prepupae 12hr  (17614) white prepupae 24hr  (14895) pupae 2d postWPP  (11273) pupae 3d postWPP  (5960) pupae 4d postWPP  (8372) adult male 01day  (7294) adult male 05day  (3510) adult male 30day  2166 adult female 01day  (4416) adult female 05day    1178 adult female 30day    961 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    717 embryo 02-04hr    1088 embryo 04-06hr    2245 embryo 06-08hr    1994 embryo 08-10hr    2342 embryo 10-12hr    3467 embryo 12-14hr    4379 embryo 14-16hr    3355 embryo 16-18hr    3868 embryo 18-20hr    3479 embryo 20-22hr    3534 embryo 22-24hr    4588 larva L1    2442 larva L2    2264 larva L3 12hr old    2072 larva L3 puffstage 1-2    1825 larva L3 puffstage 3-6    2825 larva L3 puffstage 7-9    4830 white prepupae new    9480 white prepupae 12hr  17614 white prepupae 24hr  14895 pupae 2d postWPP  11273 pupae 3d postWPP    5960 pupae 4d postWPP    8372 adult male 01day    7294 adult male 05day    3510 adult male 30day    2166 adult female 01day    4416 adult female 05day    1178 adult female 30day    961 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    717 embryo 02-04hr    1088 embryo 04-06hr    2245 embryo 06-08hr    1994 embryo 08-10hr    2342 embryo 10-12hr    3467 embryo 12-14hr    4379 embryo 14-16hr    3355 embryo 16-18hr    3868 embryo 18-20hr    3479 embryo 20-22hr    3534 embryo 22-24hr    4588 larva L1    2442 larva L2    2264 larva L3 12hr old    2072 larva L3 puffstage 1-2    1825 larva L3 puffstage 3-6    2825 larva L3 puffstage 7-9    4830 white prepupae new    9480 white prepupae 12hr    17614 white prepupae 24hr    14895 pupae 2d postWPP    11273 pupae 3d postWPP    5960 pupae 4d postWPP    8372 adult male 01day    7294 adult male 05day    3510 adult male 30day    2166 adult female 01day    4416 adult female 05day    1178 adult female 30day    961 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0082582    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0082582 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult eye, larval central nervous system, adult crop, larval hindgut, larval Malpighian tubules, adult heart, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult central nervous system, larval/adult midgut, adult hindgut, adult Malpighian tubules, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Heatmap Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea no informative data Larval Carcass no informative data Adult Head no informative data Adult Eye no informative data Adult Brain no informative data Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary no informative data Adult Testis no informative data Adult Male Accessory Gland no informative data Adult Carcass no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_24
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0082582 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1539-RE;HDC16429
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal tmodCA07346 lethal, with Scer\GAL4Mef2.PR tmodGD9005 lethal | embryonic stage tmodH7 tmodS130910 lethal | embryonic stage, with Scer\GAL4Mef2.PR tmodScer\UAS.cBa lethal | larval stage, with Scer\GAL4Mef2.PR tmodScer\UAS.cBa lethal | recessive tmod00848 tmod02288 tmodf00674 tmodf04997 tmodrG347 tmodS130910 viable tmodCC00416 viable, with Scer\GAL4pnr-MD237 tmodGD9005 Sterility Allele female fertile | germline clone tmod00848 tmodf00674 tmodf04997 Other Phenotypes Allele flight defective | heat sensitive tmodhs.PDL Phenotype manifest in Allele indirect flight muscle tmodhs.PDL indirect flight muscle & striated muscle thick filament tmodhs.PDL indirect flight muscle & striated muscle thin filament tmodhs.PDL indirect flight muscle & Z disc tmodhs.PDL striated muscle thin filament, with Scer\GAL4Mef2.PR tmodScer\UAS.cBa
Classical Alleles ( 23 )
For All Classical Alleles Show
Allele of tmod Class Mutagen Stocks Known lesion tmod00848 P-element activity 1 -- tmodc01645 piggyBac transposase 1 -- tmodc03546 piggyBac transposase 1 -- tmodc06280 piggyBac transposase 1 -- tmodDG23207 P-element activity 1 -- tmode00860 piggyBac transposase 1 -- tmodf00674 piggyBac transposase 1 -- tmodf03538 piggyBac transposase 1 -- tmodf04997 piggyBac transposase 1 -- tmodf05684 piggyBac transposase 1 -- tmodMI02468 1 -- tmodNP3280 1 -- tmod02288 P-element activity 0 -- tmodc01634 piggyBac transposase 0 -- tmodCA07346 P-element activity 0 Yes tmodCC00416 P-element activity 0 Yes tmodCPTI002716 piggyBac transposase 0 Yes tmodCPTI002773 piggyBac transposase 0 Yes tmodCPTI002889 piggyBac transposase 0 Yes tmodf06991 0 -- tmodH7 0 -- tmodrG347 P-element activity 0 -- tmodS130910 Delta2-3 0 Yes
Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Allele of tmod Class Mutagen Stocks Known lesion tmodGD9005 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes tmodJF01094 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes tmodKK108701 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes tmodhs.PDL in vitro construct - regulatory fusion 0 Yes tmodScer\UAS.cBa in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)BSC504 (Christensen et al., 2008.4.15) Df(3R)ZZ27 (Skeath, 2004)
Partially disrupted in	Df(3R)Exel6216 (Abrams et al., 2006)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD9005} NA P{KK108701} NA P{TRiP.JF01094} NA P{UAS-tmod.B} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{lacW}tmodH7 No P{PZ}tmod00848 No P{PZ}tmod02288 No P{PZ}tmodrG347 No miscellaneous insertions Mi{MIC}tmodMI02468 NA P{PTT-GA}tmodCA07346 NA P{PTT-GC}tmodCC00416 NA P{wHy}tmodDG23207 NA PBac{754.P.FSVS-0}tmodCPTI002773 NA PBac{754.P.FSVS-0}tmodCPTI002889 NA PBac{768.FSVS-0}tmodCPTI002716 NA PBac{PB}tmodc01634 NA PBac{PB}tmodc01645 NA PBac{PB}tmodc03546 NA PBac{PB}tmodc06280 NA PBac{RB}tmode00860 NA PBac{WH}tmodf00674 NA PBac{WH}tmodf03538 NA PBac{WH}tmodf04997 NA PBac{WH}tmodf05684 NA PBac{WH}tmodf06991 NA PBac{y+-attP-9A}VK00020 NA insertion of enhancer trap binary system P{GawB}tmodNP3280 No
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
fusome inferred from direct assay (Lighthouse et al., 2008)
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
actin binding inferred from sequence or structural similarity (Goldstein and Gunawardena, 2000) tropomyosin binding inferred from electronic annotation with InterPro:IPR004934 (FlyBase Curators et al., 2004-) non-traceable author statement (Kiger et al., 2003, Dye, 1997.3.8)
Biological Process
CV term Evidence References
cytoskeleton organization inferred from sequence or structural similarity with mouse Tmod1 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
cytoskeleton inferred from electronic annotation with InterPro:IPR004934 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions tmod allele Gene References tmodhs.PDL spdo (Dye et al., 1998)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 68484 DroID - A comprehensive database of gene and protein interactions. • FBgn0082582 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43633
Orthologs
Genome-wide drosophilid orthologs	Dana\GF22912 Dere\GG11761 Dgri\GH14162 Dmoj\GI24865 Dper\GL13473 Dpse\GA13696 Dsec\GM12892 Dsim\GD21531 Dvir\GJ24508 Dwil\GK14144 Dyak\GE10889
Curated drosophilid orthologs
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL007029-PB Aedes aegypti (mosquito) AGAP000969-PA Anopheles gambiae (mosquito) XP_392554.3 Apis mellifera (honey bee) XP_001943364.1 Acyrthosiphon pisum (pea aphid) 222483 Branchiostoma floridae (lancelet) ENSBTAP00000019585 Bos taurus (bovine) CBP34929 Caenorhabditis briggsae (nematode) CE29024 Caenorhabditis elegans (worm) ENSCAFP00000003547 Canis familiaris (dog) ENSCINP00000027433 Ciona intestinalis (sea squirt) CPIJ016769 Culex pipens (mosquito) ENSCPOP00000000431 Cavia porcellus (guinea pig) RP41999 Caenorhabditis remanei (nematode) ENSCSAVP00000009711 Ciona savignyi (sedentary tunicate) 226991 Capitella spl (polychaete worm) 57303 Daphnia pulex (daphnia) ENSDARP00000002475 Danio rerio (zebra fish) ENSECAP00000006294 Equus caballus (horse) ENSGACP00000024585 Gymnopilus aculeatus (mushroom) ENSGALP00000007492 Gallus gallus (chicken) 105912 Hypsipyla robusta (cedar shoot borer) ENSP00000259365 Homo sapiens (human) 227355 Lottia gigantea (owl limpet) ENSMODP00000002430 Monodelphis domestica (gray opossum) ENSMMUP00000016105 Macaca mulatta (rhesus monkey) ENSMUSP00000103402 Mus musculus (house mouse) 102755 Nematostella vectensis (starlet anemone) ENSOANP00000003048 Ornithorynchus anatinus (platypus) ENSORLP00000019797 Oryzias latipes (japanese killifish) PHUM003930-PA Pediculus humanus (human body louse) PP04808 Pristionchus pacificus (nematode) ENSPPYP00000021766 Pongo pygmaeus (orangutan) ENSPTRP00000040338 Pan troglodytes (chimpanzee) ENSRNOP00000013228 Rattus norvegicus (norway rat) Smp_003710 Schistosoma mansoni (trematode parasite) XP_786260.2 Strongylocentrotus purpuratus (purple sea urchin) 49736 Trichoplax adhaerens (metazoa) XP_970292.2 Tribolium castaneum (red flour beetle) ENSTNIP00000021233 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000039954 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000044845 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV50565 LH20007 ISCW005954 FBgn0228722 FBgn0216150 FBgn0211588 FBgn0192957 FBgn0167824 JGI_V11_57303 FBgn0073732 FBgn0151079 FBgn0147585 FBgn0121638 FBgn0104056 FBgn0099906 CPIJ016769 BGIBMGA002509 ACYPI007952 GB15450 AGAP000969 AAEL007029 PB22210 PHUM017950 GLEAN_11298
Stocks & Reagents
Stocks Listed in FlyBase ( 16 )
Harvard	- PBac{PB}tmodc01645 - PBac{PB}tmodc03546 - PBac{PB}tmodc06280 - PBac{RB}tmode00860 - PBac{WH}tmodf00674 - PBac{WH}tmodf03538 - PBac{WH}tmodf04997 - PBac{WH}tmodf05684
Kyoto	104438 w*; P{GawB}tmodNP3280
VDRC	v108389 P{KK108701}VIE-260B v32601 w1118; P{GD9005}v32601 v32602 w1118; P{GD9005}v32602
	More stocks available...
Genomic Clones ( 2 )
	BACR12J15 BACR48G16 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 99 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH23271 LD07593 LP15256 RE70606 RH11839
Other clones	MIP08125 MIP17057 RE01573
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	HL02467 LP07149 LP08648 RE14833 RE24909 RE25314 RE30432 RE67462 RE72242 RH10603 RH13618 RH33156 RH37414 RH39641 RH39964 RH42247 RH42528 RH44027 RH65608 RH68976
Other clones	15598 17647 29329 31617 45153 51153 64109 66808 71767 80304 83614 117441 119712 125728 146666 161549 161583 194202 214223.23 214243.34 214353.24 281384 CK01.3B.F8 CK01.5B.C12 CK01.9C.H10 CK01.50D.D2 CK01.61B.D11 CK01.104D.E11 CK01.106D.D7 CK01.117A.F2 Dmel_neb_009960_0630_0768 Dmel_neb_014961_0873_2823 EK008040 EK011147 EK031701 EK041745 EK049116 EK063816 EK087818 EK089216 EK125745 EK129945 EK141520 EK158623 EK160849 EK176902 EK176909 EK189913 EK194931 EK200635 EK212640 EK217546 EK236232 EK237807 EK239501 EK245507 EK247958 EK249319 EK251051 EK290554 EK297314 EK306327 EP01946 EP03012 EP03157 EP13947 FGM316G09 RP004112038 RP004124567 RP004467121 RP004492889
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0082582 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43633
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: tmod CG1539 (Ye, 1999.11)
Source for database merge of
Additional comments	The "spdo" complementation group corresponds to the CG31020 annotation and not to "tmod" as previously reported in FBrf0102830; molecular lesions in the CG31020 annotation have been identified in 12 spdo alleles, RNAi against CG31020 results in a central nervous system (CNS) phenotype essentially identical to that of spdo mutants and expression of CG31020 throughout the CNS of spdo mutant embryos results in complete to near-complete rescue of the spdo CNS phenotype. (O'Connor-Giles and Skeath, 2003) Annotations CG1539, CG15540, CG11493 merged as CG1539 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003) FlyBase curator comment: FBrf0102830 states that the "spdo" complementation group corresponds to the "tmod, tropomodulin" gene. However, FBrf0162056 shows that this was an error and the spdo complementation group actually corresponds to the CG31020 annotation. (Dye et al., 1998) The "spdo" complementation group corresponds to the CG31020 annotation and not to the CG1539 annotation. It was reported in FBrf0102830 that "spdo" corresponds to the "tmod, tropomodulin" gene (the CG1539 annotation). However, this was subsequently shown to be an error. FBrf0162056 shows that the "spdo" complementation group corresponds instead to the CG31020 annotation. (FlyBase, 1996-)
Other Comments
	dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology. (Kiger et al., 2003) dsRNA made from templates generated with primers directed against this gene is tested in an RNAi screen for effects on actin-based lamella formation. (Rogers et al., 2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_057683 NM_057684 NM_170503 NM_170504 NM_170505 NM_170506 NM_001104512 NM_001170304 NM_001170305 NM_001170306 NM_001202390 NM_001202391 RefSeq (Proteins) • NP_477031 NP_477032 NP_733382 NP_733383 NP_733384 NP_733385 NP_001097982 NP_001163775 NP_001163776 NP_001163777 NP_001189319 NP_001189320 DDBJ / EMBL / GenBank • AA264337 AAC04506 AAF57064 AAF57065 AAF57066 AAF57067 AAM11080 AAN14242 AAN14243 ABW08810 AC008299 ACZ95069 ACZ95070 ACZ95071 ADV37409 ADV37410 AI403765 AQ034044 AW940897 AY094727 BI487096 CZ467313 CZ467324 CZ468708 CZ470564 CZ478701 CZ483140 CZ486118 CZ487584 CZ488298 U92490 Entrez Gene - A searchable database of RefSeq genes. • 43633 UniProtKB/TrEMBL • A8JRH3 E1JJ21 O46231 Q9VA56 Q9VA58 Q9VA59
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Tropomodulin (IPR004934)
Linkouts
	BioGRID - A database of protein and genetic interactions • 68484 DroID - A comprehensive database of gene and protein interactions. • FBgn0082582 DRSC - Results from RNAi screens. • FBgn0082582 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0082582 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1539-RE;HDC16429 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0082582 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43633 InParanoid A subset of ortholog calls from InParanoid. • AAEL007029-PB Aedes aegypti (mosquito) AGAP000969-PA Anopheles gambiae (mosquito) XP_392554.3 Apis mellifera (honey bee) XP_001943364.1 Acyrthosiphon pisum (pea aphid) 222483 Branchiostoma floridae (lancelet) ENSBTAP00000019585 Bos taurus (bovine) CBP34929 Caenorhabditis briggsae (nematode) CE29024 Caenorhabditis elegans (worm) ENSCAFP00000003547 Canis familiaris (dog) ENSCINP00000027433 Ciona intestinalis (sea squirt) CPIJ016769 Culex pipens (mosquito) ENSCPOP00000000431 Cavia porcellus (guinea pig) RP41999 Caenorhabditis remanei (nematode) ENSCSAVP00000009711 Ciona savignyi (sedentary tunicate) 226991 Capitella spl (polychaete worm) 57303 Daphnia pulex (daphnia) ENSDARP00000002475 Danio rerio (zebra fish) ENSECAP00000006294 Equus caballus (horse) ENSGACP00000024585 Gymnopilus aculeatus (mushroom) ENSGALP00000007492 Gallus gallus (chicken) 105912 Hypsipyla robusta (cedar shoot borer) ENSP00000259365 Homo sapiens (human) 227355 Lottia gigantea (owl limpet) ENSMODP00000002430 Monodelphis domestica (gray opossum) ENSMMUP00000016105 Macaca mulatta (rhesus monkey) ENSMUSP00000103402 Mus musculus (house mouse) 102755 Nematostella vectensis (starlet anemone) ENSOANP00000003048 Ornithorynchus anatinus (platypus) ENSORLP00000019797 Oryzias latipes (japanese killifish) PHUM003930-PA Pediculus humanus (human body louse) PP04808 Pristionchus pacificus (nematode) ENSPPYP00000021766 Pongo pygmaeus (orangutan) ENSPTRP00000040338 Pan troglodytes (chimpanzee) ENSRNOP00000013228 Rattus norvegicus (norway rat) Smp_003710 Schistosoma mansoni (trematode parasite) XP_786260.2 Strongylocentrotus purpuratus (purple sea urchin) 49736 Trichoplax adhaerens (metazoa) XP_970292.2 Tribolium castaneum (red flour beetle) ENSTNIP00000021233 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000039954 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000044845 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43633 modMine - Data generated by the modENCODE project. • FBgn0082582 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV50565 LH20007 ISCW005954 FBgn0228722 FBgn0216150 FBgn0211588 FBgn0192957 FBgn0167824 JGI_V11_57303 FBgn0073732 FBgn0151079 FBgn0147585 FBgn0121638 FBgn0104056 FBgn0099906 CPIJ016769 BGIBMGA002509 ACYPI007952 GB15450 AGAP000969 AAEL007029 PB22210 PHUM017950 GLEAN_11298
Synonyms & Secondary IDs ( 17 )
Reported As
Symbol Synonym	1309/10 (Deak et al., 1997) CG1539 (Bellen, 2005.1.25, Skeath, 2004, Goldstein and Gunawardena, 2000, Rogers et al., 2003, Quinones-Coello, 2007, Giot et al., 2003, Keleman et al., 2009.8.5, Ni et al., 2008, Cammarato et al., 2011) CG11493   CG15540   CT3919 (Mardahl-Dumesnil and Fowler, 2001) CT41421 (Mardahl-Dumesnil and Fowler, 2001) E42 (Dye et al., 1998) l(3)00848 (Beaton, 2000.1.31, Spradling et al., 1999) l(3)S130910 (Read et al., 2005) spdo (Kiger et al., 2003, Spradling et al., 1999, Dye et al., 1998, Quinones-Coello, 2007) Tmod (Mardahl-Dumesnil and Fowler, 2000, Ong and Tan, 2010, Bai et al., 2007, Mardahl-Dumesnil and Fowler, 2001) tmod (Abrams et al., 2006, Buszczak et al., 2007, Christensen et al., 2008.4.15, Dietzl et al., 2007, O'Connor-Giles and Skeath, 2003, Carreira et al., 2009, Lighthouse et al., 2008, Reis et al., 2010) unnamed (Treisman and Rubin, 1996)
Name Synonym	sanpodo (Rogers et al., 2003) tropmodulin (Ong and Tan, 2010) Tropomodulin (Jacinto and Baum, 2003) tropomodulin (Carreira et al., 2009, Lighthouse et al., 2008, Ong et al., 2010, Cammarato et al., 2011)
Secondary FlyBase IDs
	FBgn0010731 FBgn0011716 FBgn0039785 FBgn0039786
References ( 55 )
Generate a list of	All references relating to this gene ( 55 )
List References by type	Research paper  ( 19 ) Supplementary material  ( 8 ) Review  ( 1 ) Personal communication to FlyBase  ( 14 ) Abstract  ( 2 ) FlyBase analysis  ( 4 ) Curated genome annotation  ( 1 ) DNA/RNA sequence record  ( 1 ) Computer file  ( 4 ) Automatic genome annotation  ( 1 )
Recent research papers ( 4 )
	Carreira et al., 2011, BMC Dev. Biol. 11: 32 Genetic basis of wing morphogenesis in Drosophila: sexual dimorphism and non-allometric effects of shape variation. [FBrf0214273] Ong and Tan, 2010, Dev. Biol. 337(1): 84--98 Germline cyst formation and incomplete cytokinesis during Drosophila melanogaster oogenesis. [FBrf0209400] Ong et al., 2010, Dev. Biol. 346(2): 161--169 Mutations of DMYPT cause over constriction of contractile rings and ring canals during Drosophila germline cyst formation. [FBrf0211890] Reis et al., 2010, PLoS Genet. 6(11): e1001206 A buoyancy-based screen of Drosophila larvae for fat-storage mutants reveals a role for sir2 in coupling fat storage to nutrient availability. [FBrf0212335] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2010 Show reviews ...