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Gene Dmel\pps

General Information
Symbol	Dmel\pps	Species	D. melanogaster
Name	protein partner of snf	Annotation symbol	CG6525
Feature type	protein_coding_gene	FlyBase ID	FBgn0082831
Gene Model Status	Current	Stock availability	3 publicly available
Also Known As	spp
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	87B9-87B9	Sequence location	3R:8,239,550..8,246,973 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene protein partner of snf is referred to in FlyBase by the symbol Dmel\pps (CG6525, FBgn0082831). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding. There is experimental evidence that it is involved in the biological process: regulation of alternative mRNA splicing, via spliceosome. 6 alleles are reported. The phenotype of these alleles is annotated with: ovary. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: BRK domain; Spen paralogue and orthologue SPOC, C-terminal; Transcription elongation factor S-II, central domain; Zinc finger, FYVE/PHD-type; Zinc finger, PHD-finger; Zinc finger, PHD-type; Zinc finger, PHD-type, conserved site; Zinc finger, RING/FYVE/PHD-type. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system. Comments on Affy2 ProbeSet: ProbeSet 1630626_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of pps. Gene sequence location is 3R:8239550..8246973.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02	Controlled Vocabulary Terms regulation of alternative mRNA splicing, via spliceosome
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 87B9-87B9   Limits computationally determined from genome sequence between P{PZ}svp07842 and P{lacW}Vha55j2E9
Experimentally Determined Cytological Location
Cytogenetic map Notes References 87B-87B     (Chaouki et al., 2003)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\pps for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) pps-RA FBtr0082586  NM_141936   6724   2016 pps-RB FBtr0304744  NM_001260146   6722   2018
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein pps-PA   FBpp0082058   222.0   2016   9.22     NP_650193   AAF54807 pps-PB   FBpp0293286   222.2   2018   9.22     NP_001247075   AFH06393
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, PHD-type (IPR001965) Transcription elongation factor S-II, central domain (IPR003618) BRK domain (IPR006576) Spen paralogue and orthologue SPOC, C-terminal (IPR012921) Zinc finger, FYVE/PHD-type (IPR011011) Zinc finger, PHD-type, conserved site (IPR019786) Zinc finger, PHD-finger (IPR019787) Zinc finger, RING/FYVE/PHD-type (IPR013083)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF54807   AE014297 AFH06393   BI237495   BP545732   BP545733   BT056321   BT100107   CK133654   CO271641   CO273479   CO305766   CO305927   EC077416   EC209363   EC237956   EC243493   EC258171   EL874448   EL874665   ES696062   EW712892   GO270994
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VG78
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
colocalizes_with nuclear chromatin inferred from direct assay (Johnson et al., 2010) colocalizes_with small nuclear ribonucleoprotein complex inferred from direct assay (Johnson et al., 2010)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    105.575 Larval Midgut    25.8 Larval Hindgut    41 Larval Malpighian Tubules    58.1 Larval Fat Body    21.9 Larval Salivary Gland    69.9 Larval Trachea    13.675 Larval Carcass    43.375 Adult Head    43.1 Adult Eye    15.975 Adult Brain    95.3 Adult Thoracic-Abdominal Ganglion    69.5 Adult Crop    34.5 Adult Midgut    37.3 Adult Hindgut    47.4 Adult Malpighian Tubules    13.1 Adult Fat Body    20.7 Adult Salivary Gland    51.8 Adult Heart    5.425 Adult VirginFemale Spermatheca    4 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    76.8 Adult Testis    51 Adult Male Accessory Gland    53.1 Adult Carcass    39.1 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    105.575 Larval Midgut    25.8 Larval Hindgut    41 Larval Malpighian Tubules    58.1 Larval Fat Body    21.9 Larval Salivary Gland    69.9 Larval Trachea    13.675 Larval Carcass    43.375 Adult Head    43.1 Adult Eye    15.975 Adult Brain    95.3 Adult Thoracic-Abdominal Ganglion    69.5 Adult Crop    34.5 Adult Midgut    37.3 Adult Hindgut    47.4 Adult Malpighian Tubules    13.1 Adult Fat Body    20.7 Adult Salivary Gland    51.8 Adult Heart    5.425 Adult VirginFemale Spermatheca    4 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    76.8 Adult Testis    51 Adult Male Accessory Gland    53.1 Adult Carcass    39.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    105.575 Larval Midgut    25.8 Larval Hindgut    41 Larval Malpighian Tubules    58.1 Larval Fat Body    21.9 Larval Salivary Gland    69.9 Larval Trachea    13.675 Larval Carcass    43.375 Adult Head    43.1 Adult Eye    15.975 Adult Brain    95.3 Adult Thoracic-Abdominal Ganglion    69.5 Adult Crop    34.5 Adult Midgut    37.3 Adult Hindgut    47.4 Adult Malpighian Tubules    13.1 Adult Fat Body    20.7 Adult Salivary Gland    51.8 Adult Heart    5.425 Adult VirginFemale Spermatheca    4 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    76.8 Adult Testis    51 Adult Male Accessory Gland    53.1 Adult Carcass    39.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    105.575 Larval Midgut    25.8 Larval Hindgut    41 Larval Malpighian Tubules    58.1 Larval Fat Body    21.9 Larval Salivary Gland    69.9 Larval Trachea    13.675 Larval Carcass    43.375 Adult Head    43.1 Adult Eye    15.975 Adult Brain    95.3 Adult Thoracic-Abdominal Ganglion    69.5 Adult Crop    34.5 Adult Midgut    37.3 Adult Hindgut    47.4 Adult Malpighian Tubules    13.1 Adult Fat Body    20.7 Adult Salivary Gland    51.8 Adult Heart    5.425 Adult VirginFemale Spermatheca    4 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    76.8 Adult Testis    51 Adult Male Accessory Gland    53.1 Adult Carcass    39.1 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    105.575 Larval Midgut    25.8 Larval Hindgut    41 Larval Malpighian Tubules    58.1 Larval Fat Body    21.9 Larval Salivary Gland    69.9 Larval Trachea    13.675 Larval Carcass    43.375 Adult Head    43.1 Adult Eye    15.975 Adult Brain    95.3 Adult Thoracic-Abdominal Ganglion    69.5 Adult Crop    34.5 Adult Midgut    37.3 Adult Hindgut    47.4 Adult Malpighian Tubules    13.1 Adult Fat Body    20.7 Adult Salivary Gland    51.8 Adult Heart    5.425 Adult VirginFemale Spermatheca    4 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    76.8 Adult Testis    51 Adult Male Accessory Gland    53.1 Adult Carcass    39.1 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    105.575 Larval Midgut    25.8 Larval Hindgut    41 Larval Malpighian Tubules    58.1 Larval Fat Body    21.9 Larval Salivary Gland    69.9 Larval Trachea    13.675 Larval Carcass    43.375 Adult Head    43.1 Adult Eye    15.975 Adult Brain    95.3 Adult Thoracic-Abdominal Ganglion    69.5 Adult Crop    34.5 Adult Midgut    37.3 Adult Hindgut    47.4 Adult Malpighian Tubules    13.1 Adult Fat Body    20.7 Adult Salivary Gland    51.8 Adult Heart    5.425 Adult VirginFemale Spermatheca    4 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    76.8 Adult Testis    51 Adult Male Accessory Gland    53.1 Adult Carcass    39.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    105.575 Larval Midgut    25.8 Larval Hindgut    41 Larval Malpighian Tubules    58.1 Larval Fat Body    21.9 Larval Salivary Gland    69.9 Larval Trachea    13.675 Larval Carcass    43.375 Adult Head    43.1 Adult Eye    15.975 Adult Brain    95.3 Adult Thoracic-Abdominal Ganglion    69.5 Adult Crop    34.5 Adult Midgut    37.3 Adult Hindgut    47.4 Adult Malpighian Tubules    13.1 Adult Fat Body    20.7 Adult Salivary Gland    51.8 Adult Heart    5.425 Adult VirginFemale Spermatheca    4 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    76.8 Adult Testis    51 Adult Male Accessory Gland    53.1 Adult Carcass    39.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    105.575 Larval Midgut    25.8 Larval Hindgut    41 Larval Malpighian Tubules    58.1 Larval Fat Body    21.9 Larval Salivary Gland    69.9 Larval Trachea    13.675 Larval Carcass    43.375 Adult Head    43.1 Adult Eye    15.975 Adult Brain    95.3 Adult Thoracic-Abdominal Ganglion    69.5 Adult Crop    34.5 Adult Midgut    37.3 Adult Hindgut    47.4 Adult Malpighian Tubules    13.1 Adult Fat Body    20.7 Adult Salivary Gland    51.8 Adult Heart    5.425 Adult VirginFemale Spermatheca    4 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    76.8 Adult Testis    51 Adult Male Accessory Gland    53.1 Adult Carcass    39.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    43.1   NA  Eye    15.975   NA  Brain    95.3   105.575  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    69.5   NA  Crop    34.5   no informative data  Midgut    no informative data   41  Hindgut    47.4   58.1  Malpighian Tubules    no informative data   no informative data  Fat Body    no informative data   69.9  Salivary Gland    no informative data   NA  Heart    5.425   no informative data  Trachea    NA   NA  VirginFemale Spermatheca    4   NA  InseminatedFemale Spermatheca    3.2   NA  Ovary    76.8   NA  Testis    51   NA  Male Accessory Gland    no informative data   43.375  Carcass    no informative data FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    37 central nervous system, larvae L3    38 central nervous system, pupae P8    14 head, virgin 1-day female    9 head, virgin 4-day female    11 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    16 head, mated 4-day male    14 head, mated 20-day male    14 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    5 fat body, white prepupae    10 fat body, pupae P8    9 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female    48 ovary, mated 4-day female    49 testis, mated 4-day male    16 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (37) central nervous system, larvae L3  (38) central nervous system, pupae P8    14 head, virgin 1-day female    9 head, virgin 4-day female    11 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    16 head, mated 4-day male    14 head, mated 20-day male    14 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    5 fat body, white prepupae    10 fat body, pupae P8    9 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female  (48) ovary, mated 4-day female  (49) testis, mated 4-day male    16 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    37 central nervous system, larvae L3    38 central nervous system, pupae P8    14 head, virgin 1-day female    9 head, virgin 4-day female    11 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    16 head, mated 4-day male    14 head, mated 20-day male    14 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    5 fat body, white prepupae    10 fat body, pupae P8    9 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female    48 ovary, mated 4-day female    49 testis, mated 4-day male    16 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    37 central nervous system, larvae L3    38 central nervous system, pupae P8    14 head, virgin 1-day female    9 head, virgin 4-day female    11 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    16 head, mated 4-day male    14 head, mated 20-day male    14 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    5 fat body, white prepupae    10 fat body, pupae P8    9 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female    48 ovary, mated 4-day female    49 testis, mated 4-day male    16 accessory gland, mated 4-day male    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    37 central nervous system, larvae L3    38 central nervous system, pupae P8    14 head, virgin 1-day female    9 head, virgin 4-day female    11 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    16 head, mated 4-day male    14 head, mated 20-day male    14 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    5 fat body, white prepupae    10 fat body, pupae P8    9 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female    48 ovary, mated 4-day female    49 testis, mated 4-day male    16 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (37) central nervous system, larvae L3  (38) central nervous system, pupae P8    14 head, virgin 1-day female    9 head, virgin 4-day female    11 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    16 head, mated 4-day male    14 head, mated 20-day male    14 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    5 fat body, white prepupae    10 fat body, pupae P8    9 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female  (48) ovary, mated 4-day female  (49) testis, mated 4-day male    16 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    37 central nervous system, larvae L3    38 central nervous system, pupae P8    14 head, virgin 1-day female    9 head, virgin 4-day female    11 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    16 head, mated 4-day male    14 head, mated 20-day male    14 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    5 fat body, white prepupae    10 fat body, pupae P8    9 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female    48 ovary, mated 4-day female    49 testis, mated 4-day male    16 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    37 central nervous system, larvae L3    38 central nervous system, pupae P8    14 head, virgin 1-day female    9 head, virgin 4-day female    11 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    16 head, mated 4-day male    14 head, mated 20-day male    14 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    5 fat body, white prepupae    10 fat body, pupae P8    9 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female    48 ovary, mated 4-day female    49 testis, mated 4-day male    16 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages, during early pupal stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    41 embryo 02-04hr    26 embryo 04-06hr    24 embryo 06-08hr    23 embryo 08-10hr    17 embryo 10-12hr    9 embryo 12-14hr    9 embryo 14-16hr    7 embryo 16-18hr    5 embryo 18-20hr    4 embryo 20-22hr    5 embryo 22-24hr    5 larva L1    8 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    13 white prepupae new    14 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    12 pupae 3d postWPP    8 pupae 4d postWPP    7 adult male 01day    10 adult male 05day    12 adult male 30day    12 adult female 01day    17 adult female 05day    29 adult female 30day    30 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (41) embryo 02-04hr  26 embryo 04-06hr    24 embryo 06-08hr    23 embryo 08-10hr    17 embryo 10-12hr    9 embryo 12-14hr    9 embryo 14-16hr    7 embryo 16-18hr    5 embryo 18-20hr    4 embryo 20-22hr    5 embryo 22-24hr    5 larva L1    8 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    13 white prepupae new    14 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    12 pupae 3d postWPP    8 pupae 4d postWPP    7 adult male 01day    10 adult male 05day    12 adult male 30day    12 adult female 01day    17 adult female 05day  (29) adult female 30day  (30) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    41 embryo 02-04hr    26 embryo 04-06hr    24 embryo 06-08hr    23 embryo 08-10hr    17 embryo 10-12hr    9 embryo 12-14hr    9 embryo 14-16hr    7 embryo 16-18hr    5 embryo 18-20hr    4 embryo 20-22hr    5 embryo 22-24hr    5 larva L1    8 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    13 white prepupae new    14 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    12 pupae 3d postWPP    8 pupae 4d postWPP    7 adult male 01day    10 adult male 05day    12 adult male 30day    12 adult female 01day    17 adult female 05day    29 adult female 30day    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    41 embryo 02-04hr    26 embryo 04-06hr    24 embryo 06-08hr    23 embryo 08-10hr    17 embryo 10-12hr    9 embryo 12-14hr    9 embryo 14-16hr    7 embryo 16-18hr    5 embryo 18-20hr    4 embryo 20-22hr    5 embryo 22-24hr    5 larva L1    8 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    13 white prepupae new    14 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    12 pupae 3d postWPP    8 pupae 4d postWPP    7 adult male 01day    10 adult male 05day    12 adult male 30day    12 adult female 01day    17 adult female 05day    29 adult female 30day    30 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    41 embryo 02-04hr    26 embryo 04-06hr    24 embryo 06-08hr    23 embryo 08-10hr    17 embryo 10-12hr    9 embryo 12-14hr    9 embryo 14-16hr    7 embryo 16-18hr    5 embryo 18-20hr    4 embryo 20-22hr    5 embryo 22-24hr    5 larva L1    8 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    13 white prepupae new    14 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    12 pupae 3d postWPP    8 pupae 4d postWPP    7 adult male 01day    10 adult male 05day    12 adult male 30day    12 adult female 01day    17 adult female 05day    29 adult female 30day    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (41) embryo 02-04hr  26 embryo 04-06hr    24 embryo 06-08hr    23 embryo 08-10hr    17 embryo 10-12hr    9 embryo 12-14hr    9 embryo 14-16hr    7 embryo 16-18hr    5 embryo 18-20hr    4 embryo 20-22hr    5 embryo 22-24hr    5 larva L1    8 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    13 white prepupae new    14 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    12 pupae 3d postWPP    8 pupae 4d postWPP    7 adult male 01day    10 adult male 05day    12 adult male 30day    12 adult female 01day    17 adult female 05day  29 adult female 30day  30 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    41 embryo 02-04hr    26 embryo 04-06hr    24 embryo 06-08hr    23 embryo 08-10hr    17 embryo 10-12hr    9 embryo 12-14hr    9 embryo 14-16hr    7 embryo 16-18hr    5 embryo 18-20hr    4 embryo 20-22hr    5 embryo 22-24hr    5 larva L1    8 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    13 white prepupae new    14 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    12 pupae 3d postWPP    8 pupae 4d postWPP    7 adult male 01day    10 adult male 05day    12 adult male 30day    12 adult female 01day    17 adult female 05day    29 adult female 30day    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    41 embryo 02-04hr    26 embryo 04-06hr    24 embryo 06-08hr    23 embryo 08-10hr    17 embryo 10-12hr    9 embryo 12-14hr    9 embryo 14-16hr    7 embryo 16-18hr    5 embryo 18-20hr    4 embryo 20-22hr    5 embryo 22-24hr    5 larva L1    8 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    13 white prepupae new    14 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    12 pupae 3d postWPP    8 pupae 4d postWPP    7 adult male 01day    10 adult male 05day    12 adult male 30day    12 adult female 01day    17 adult female 05day    29 adult female 30day    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    13 embryonic 1182-4H    20 embryonic GM2    19 embryonic Kc167    17 embryonic S1    25 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    16 wing disc ML-DmD8    17 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    7 wing disc ML-DmD32    29 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    29 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    14 ovary fGS/OSS    30 ovary OSC    28 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (28) Schneider line 2 Sg4    13 embryonic 1182-4H    20 embryonic GM2    19 embryonic Kc167    17 embryonic S1    25 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    16 wing disc ML-DmD8    17 wing disc ML-DmD9    20 wing disc ML-DmD16-c3  26 wing disc ML-DmD21    7 wing disc ML-DmD32  (29) haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1  (29) CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    14 ovary fGS/OSS  (30) ovary OSC  (28) ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    13 embryonic 1182-4H    20 embryonic GM2    19 embryonic Kc167    17 embryonic S1    25 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    16 wing disc ML-DmD8    17 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    7 wing disc ML-DmD32    29 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    29 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    14 ovary fGS/OSS    30 ovary OSC    28 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    13 embryonic 1182-4H    20 embryonic GM2    19 embryonic Kc167    17 embryonic S1    25 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    16 wing disc ML-DmD8    17 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    7 wing disc ML-DmD32    29 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    29 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    14 ovary fGS/OSS    30 ovary OSC    28 ovary OSS    15 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    13 embryonic 1182-4H    20 embryonic GM2    19 embryonic Kc167    17 embryonic S1    25 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    16 wing disc ML-DmD8    17 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    7 wing disc ML-DmD32    29 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    29 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    14 ovary fGS/OSS    30 ovary OSC    28 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  28 Schneider line 2 Sg4    13 embryonic 1182-4H    20 embryonic GM2    19 embryonic Kc167    17 embryonic S1    25 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    16 wing disc ML-DmD8    17 wing disc ML-DmD9    20 wing disc ML-DmD16-c3  26 wing disc ML-DmD21    7 wing disc ML-DmD32  29 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1  29 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    14 ovary fGS/OSS  30 ovary OSC  28 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    13 embryonic 1182-4H    20 embryonic GM2    19 embryonic Kc167    17 embryonic S1    25 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    16 wing disc ML-DmD8    17 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    7 wing disc ML-DmD32    29 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    29 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    14 ovary fGS/OSS    30 ovary OSC    28 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    13 embryonic 1182-4H    20 embryonic GM2    19 embryonic Kc167    17 embryonic S1    25 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    16 wing disc ML-DmD8    17 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    7 wing disc ML-DmD32    29 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    29 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    14 ovary fGS/OSS    30 ovary OSC    28 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    11 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    16 Cadmium 100 mM 48 hrs, 4-day adult    36 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    33 Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    27 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    11 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    16 Cadmium 100 mM 48 hrs, 4-day adult  (36) Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3  (32) Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (33) Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult  (27) Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    11 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    16 Cadmium 100 mM 48 hrs, 4-day adult    36 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    33 Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    27 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    11 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    16 Cadmium 100 mM 48 hrs, 4-day adult    36 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    33 Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    27 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    11 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    16 Cadmium 100 mM 48 hrs, 4-day adult    36 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    33 Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    27 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    11 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    16 Cadmium 100 mM 48 hrs, 4-day adult  (36) Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3  32 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (33) Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult  27 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    11 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    16 Cadmium 100 mM 48 hrs, 4-day adult    36 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    33 Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    27 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    11 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    16 Cadmium 100 mM 48 hrs, 4-day adult    36 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    33 Caffeine 25 mg/ml 48 hrs, 4-day adult    14 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    27 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_06 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0082831 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6525-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Sterility Allele female sterile, with Df(3R)pps1/Df(3R)Exel7316 pps+tJa Phenotype manifest in Allele ovary, with Df(3R)pps1/Df(3R)Exel7316 pps+tJa
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of pps Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 6 )
For All Alleles Carried on Transgenic Constructs Show
Allele of pps Class Mutagen Stocks Known lesion ppsGL00684 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes ppsHMS01741 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes ppsKK100660 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes pps+tJa in vitro construct - genomic fragment 0 Yes ppsGD4591 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes ppsNIG.6525R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6164 (Ryder, 2004.4.26) Df(3R)Exel6165 (Ryder, 2004.4.26) Df(3R)Exel7316 (Ryder, 2004.4.26) Df(3R)pps1 (Johnson et al., 2010)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4591} NA P{KK100660} NA P{NIG.6525R} NA P{TRiP.GL00684} NA P{TRiP.HMS01741} NA characterization construct P{pps+tJa} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 9 unique terms )
Terms Based on Experimental Evidence ( 4 terms )
Molecular Function
CV term Evidence References
protein binding inferred from physical interaction with snf (Johnson et al., 2010)
Biological Process
CV term Evidence References
regulation of alternative mRNA splicing, via spliceosome inferred from mutant phenotype (Johnson et al., 2010)
Cellular Component
CV term Evidence References
colocalizes_with nuclear chromatin inferred from direct assay (Johnson et al., 2010) colocalizes_with small nuclear ribonucleoprotein complex inferred from direct assay (Johnson et al., 2010)
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
hydrolase activity, acting on acid anhydrides inferred from electronic annotation with InterPro:IPR006576 (FlyBase Curators et al., 2004-) sequence-specific DNA binding transcription factor activity inferred from sequence or structural similarity with EMBL:D87685 (FlyBase, 1992-) zinc ion binding inferred from electronic annotation with InterPro:IPR001965 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
regulation of transcription, DNA-dependent inferred from sequence or structural similarity with EMBL:D87685 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
nucleus inferred from sequence or structural similarity with EMBL:D87685 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	gene_with_edited_transcript (Graveley et al., 2011) nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
pps - Ald anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) pps - CG30344 experimental knowledge based (Guruharsha et al., 2011) pps - CG3344 experimental knowledge based (Guruharsha et al., 2011) pps - CG7239 experimental knowledge based (Guruharsha et al., 2011) pps - Cyp4ae1 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions pps allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 66623 DroID - A comprehensive database of gene and protein interactions. • FBgn0082831 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41524
Orthologs
OrthoDB Orthologs (66) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6TF14H Dipteran inclusive ortholog search EOG6640KX Insect inclusive ortholog search EOG6NP5Z9 Arthropod inclusive ortholog search EOG6C5B08 Metazoa inclusive ortholog search EOG63VBN4
Orthologs in Drosophila Species (EOG6TF14H)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\pps     Drosophila simulans   Dsim\GD18829     Drosophila sechellia   Dsec\GM24029 Y   Drosophila erecta   Dere\GG18883 Y   Drosophila yakuba   Dyak\GE26190 Y   Drosophila ananassae   Dana\GF17954 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA19664 Y   Drosophila persimilis   Dper\GL27309 Y   Drosophila willistoni   Dwil\GK14401 Y   Drosophila virilis   Dvir\GJ24469 Y   Drosophila mojavensis   Dmoj\GI24826 Y   Drosophila grimshawi   Dgri\GH13879 Y
Orthologs in non-Drosophila Dipterans (EOG6640KX)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL007181   Anopheles gambiae Malaria mosquito  Agam\AGAP004866   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ013846
Orthologs in non-Dipteran Insects (EOG6NP5Z9)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB47113   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG022746   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH22499   Atta cephalotes Leafcutter ant  Acep\ACEP10603   Camponotus floridanus Florida carpenter ant  Cflo\CFLO16743   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL15687   Linepithema humile Argentine ant  Lhum\LH23158   Pogonomyrmex barbatus Red harvester ant  Pbar\PB22994   Solenopsis invicta Red fire ant  Sinv\SINV17246   Solenopsis invicta Red fire ant  Sinv\SINV13182   Solenopsis invicta Red fire ant  Sinv\SINV12834   Acyrthosiphon pisum Pea aphid  Apim\ACYPI008591   Bombyx mori Silkmoth  Bmor\BGIBMGA003521   Pediculus humanus Human body louse  Phum\PHUM617330   Tribolium castaneum Red flour beetle  Tcas\TC014624
Orthologs in non-Insect Arthropods (EOG6C5B08)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_244749   Daphnia pulex Water flea  Dpux\cytb   Daphnia pulex Water flea  Dpux\JGI_V11_333653   Daphnia pulex Water flea  Dpux\cytb   Daphnia pulex Water flea  Dpux\BTK   Daphnia pulex Water flea  Dpux\JGI_V11_320610   Daphnia pulex Water flea  Dpux\JGI_V11_244754   Daphnia pulex Water flea  Dpux\JGI_V11_332948   Daphnia pulex Water flea  Dpux\cytb   Daphnia pulex Water flea  Dpux\JGI_V11_316924   Daphnia pulex Water flea  Dpux\JGI_V11_269670   Daphnia pulex Water flea  Dpux\COI   Daphnia pulex Water flea  Dpux\gd   Daphnia pulex Water flea  Dpux\JGI_V11_331563   Daphnia pulex Water flea  Dpux\JGI_V11_102106   Daphnia pulex Water flea  Dpux\JGI_V11_251635   Daphnia pulex Water flea  Dpux\matK   Daphnia pulex Water flea  Dpux\JGI_V11_119254   Ixodes scapularis Deer tick  Isca\ISCW000551
Orthologs in non-Arthropod Metazoa (EOG63VBN4)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_012815gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_002559gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_016950gn   Danio rerio Zebrafish  Drer\si:dkey-188i13.1   Danio rerio Zebrafish  Drer\si:ch73-181d5.4   Xenopus tropicalis Western clawed frog  Xtro\dido1   Xenopus tropicalis Western clawed frog  Xtro\phf3   Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000033404   Gallus gallus Domestic chicken  Ggal\PHF3   Mus musculus House mouse  Mmus\Spocd1   Mus musculus House mouse  Mmus\Phf3   Mus musculus House mouse  Mmus\Dido1   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000009936   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000023000   Rattus norvegicus Norway rat  Rnor\Phf3   Homo sapiens Human  Hsap\PHF3   Homo sapiens Human  Hsap\ENSG00000134668
Human Orthologs (2)
Gene OMIM HGNC Hsap\PHF3     Hsap\ENSG00000134668
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila sechellia Dsec\GM24029 Drosophila erecta Dere\GG18883 Drosophila yakuba Dyak\GE26190 Drosophila ananassae Dana\GF17954 Drosophila pseudoobscura pseudoobscura Dpse\GA19664 Drosophila persimilis Dper\GL27309 Drosophila willistoni Dwil\GK14401 Drosophila virilis Dvir\GJ24469 Drosophila mojavensis Dmoj\GI24826 Drosophila grimshawi Dgri\GH13879
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	38529 y1 sc* v1; P{TRiP.HMS01741}attP2 38912 y1 sc* v1; P{TRiP.GL00684}attP40
VDRC	v108086 P{KK100660}VIE-260B
Genomic Clones ( 1 )
	BACR28I14 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 17 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	UT01587
Other clones	IP14651
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RE33732
Other clones	11125 146781 147012 214543.49 CK01.169D.G1 DMG1-chr3R.9.050.a EK104125 EK111116 EK249364 EK249817 FB59-CG6525-RA FGC032H09 IP14451 IP14751
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0082831 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41524
Antibody Information
	polyclonal (Johnson et al., 2010)
Other Information
Discoverer
Etymology
Identification
	Identified in a yeast two hybrid screen for SNF interacting proteins and confirmed via co-IP assays. (Johnson et al., 2007)
Relationship to Other Genes
Source for database identity of	Source for identity of: pps CG6525 (Johnson et al., 2007) Source for identity of: Spp CG6525 (Nagengast and Chaouki, 2003.2.17)
Source for database merge of
Additional comments
Other Comments
	Animals homozygous for a female-lethal antimorphic allele arrest development early in embryogenesis (~1-2 hours after egg deposition), the timing of which coincides with the stable establishment of the autoregulatory splicing loop. (Johnson et al., 2007) Nomenclature: Symbol reverting from 'Spp' to 'CG6525' until more is known about the mutant phenotype. (Kornberg et al., 2005.1.24) Identification: yeast two hybrid assay with Sxl. The CG6525 protein interacts with the product of the Sxl gene. (Chaouki et al., 2003) Genetic data suggests that CG6525 is likely to contribute to the establishment of the Sxl autoregulatory splicing loop. (Chaouki et al., 2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141936 NM_001260146 RefSeq (Proteins) • NP_650193 NP_001247075 DDBJ / EMBL / GenBank • AAF54807 AFH06393 Entrez Gene - A searchable database of RefSeq genes. • 41524 UniProtKB/TrEMBL • Q9VG78
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, PHD-type (IPR001965) Transcription elongation factor S-II, central domain (IPR003618) BRK domain (IPR006576) Spen paralogue and orthologue SPOC, C-terminal (IPR012921) Zinc finger, FYVE/PHD-type (IPR011011) Zinc finger, PHD-type, conserved site (IPR019786) Zinc finger, PHD-finger (IPR019787) Zinc finger, RING/FYVE/PHD-type (IPR013083)
Linkouts
	BioGRID - A database of protein and genetic interactions • 66623 DroID - A comprehensive database of gene and protein interactions. • FBgn0082831 DRSC - Results from RNAi screens. • FBgn0082831 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0082831 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6525-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0082831 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41524 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41524 modMine - Data generated by the modENCODE project. • FBgn0082831
Synonyms & Secondary IDs ( 9 )
Reported As
Symbol Synonym	CG6525 (Johnson et al., 2007, Bienz, 2006, Keleman et al., 2009.8.5, Johnson et al., 2010, Ni et al., 2010.12.1) FBgn0082831 (Lehmann et al., 2010) pps (Johnson et al., 2007, Nurminsky, 2007, Weake et al., 2011, Johnson et al., 2010, Wasbrough et al., 2010, Japanese National Institute of Genetics, 2012.5.21) spp (Nagengast et al., 2004, Nagengast and Salz, 2004) Spp (Nagengast and Chaouki, 2003.2.17) SPP (Chaouki et al., 2003)
Name Synonym	CG6525   protein partner of sans-fille (Johnson et al., 2010) protein partner of snf (Johnson et al., 2007) SNFs Protein Partner (Chaouki et al., 2003)
Secondary FlyBase IDs
	FBgn0038041
References ( 27 )
Generate a list of	All references relating to this gene ( 27 )
List References by type	Research paper  ( 3 ) Supplementary material  ( 7 ) Review  ( 1 ) Personal communication to FlyBase  ( 7 ) Abstract  ( 4 ) FlyBase analysis  ( 1 ) Conference report  ( 1 ) Stock list  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 1 )
	Weake et al., 2011, Genes Dev. 25(14): 1499--1509 Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation. [FBrf0214372] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...