Gene Dmel\CG34116

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General Information

Symbol

Dmel\CG34116

Species

D. melanogaster

Name

Annotation symbol

CG34116

Feature type

protein_coding_gene

FlyBase ID

FBgn0083952

Gene Model Status

Current

Stock availability

None publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

76C6-76C6

Sequence location

3L:19,798,341..19,799,136 [-]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG34116 (FBgn0083952). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: DNA binding. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Zinc finger, BED-type predicted. Summary of modENCODE Temporal Expression Profile: No temporal expression data available due to processing error. This will be corrected the next time these data and summaries are processed. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1628330_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG34116. Gene sequence location is 3L:19798341..19799136.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

76C6-76C6

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG34116 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.46

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG34116-RA

FBtr0110816

NM_001043151

796

211

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG34116-PA

FBpp0110113

24.1

211

6.10

NP_001036616

ABI31263

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Zinc finger, BED-type predicted (IPR003656)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q0E8D0

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		43.775
Larval Midgut		9.3
Larval Hindgut		12.2
Larval Malpighian Tubules		20.2
Larval Fat Body		23
Larval Salivary Gland		22.4
Larval Trachea		30.375
Larval Carcass		13.45
Adult Head		19.4
Adult Eye		20.9
Adult Brain		28.3
Adult Thoracic-Abdominal Ganglion		26.1
Adult Crop		23.8
Adult Midgut		17.5
Adult Hindgut		21
Adult Malpighian Tubules		25.6
Adult Fat Body		16.8
Adult Salivary Gland		34.4
Adult Heart		19.75
Adult VirginFemale Spermatheca		30.1
Adult InseminatedFemale Spermatheca		32.4
Adult Ovary		71.4
Adult Testis		11.7
Adult Male Accessory Gland		28.3
Adult Carcass		15.3
Expression Level Scale		None Low

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		43.775
Larval Midgut		9.3
Larval Hindgut		12.2
Larval Malpighian Tubules		20.2
Larval Fat Body		23
Larval Salivary Gland		22.4
Larval Trachea		30.375
Larval Carcass		13.45
Adult Head		19.4
Adult Eye		20.9
Adult Brain		28.3
Adult Thoracic-Abdominal Ganglion		26.1
Adult Crop		23.8
Adult Midgut		17.5
Adult Hindgut		21
Adult Malpighian Tubules		25.6
Adult Fat Body		16.8
Adult Salivary Gland		34.4
Adult Heart		19.75
Adult VirginFemale Spermatheca		30.1
Adult InseminatedFemale Spermatheca		32.4
Adult Ovary		71.4
Adult Testis		11.7
Adult Male Accessory Gland		28.3
Adult Carcass		15.3
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		43.775
Larval Midgut		9.3
Larval Hindgut		12.2
Larval Malpighian Tubules		20.2
Larval Fat Body		23
Larval Salivary Gland		22.4
Larval Trachea		30.375
Larval Carcass		13.45
Adult Head		19.4
Adult Eye		20.9
Adult Brain		28.3
Adult Thoracic-Abdominal Ganglion		26.1
Adult Crop		23.8
Adult Midgut		17.5
Adult Hindgut		21
Adult Malpighian Tubules		25.6
Adult Fat Body		16.8
Adult Salivary Gland		34.4
Adult Heart		19.75
Adult VirginFemale Spermatheca		30.1
Adult InseminatedFemale Spermatheca		32.4
Adult Ovary		71.4
Adult Testis		11.7
Adult Male Accessory Gland		28.3
Adult Carcass		15.3
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		43.775
Larval Midgut		9.3
Larval Hindgut		12.2
Larval Malpighian Tubules		20.2
Larval Fat Body		23
Larval Salivary Gland		22.4
Larval Trachea		30.375
Larval Carcass		13.45
Adult Head		19.4
Adult Eye		20.9
Adult Brain		28.3
Adult Thoracic-Abdominal Ganglion		26.1
Adult Crop		23.8
Adult Midgut		17.5
Adult Hindgut		21
Adult Malpighian Tubules		25.6
Adult Fat Body		16.8
Adult Salivary Gland		34.4
Adult Heart		19.75
Adult VirginFemale Spermatheca		30.1
Adult InseminatedFemale Spermatheca		32.4
Adult Ovary		71.4
Adult Testis		11.7
Adult Male Accessory Gland		28.3
Adult Carcass		15.3
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		43.775
Larval Midgut		9.3
Larval Hindgut		12.2
Larval Malpighian Tubules		20.2
Larval Fat Body		23
Larval Salivary Gland		22.4
Larval Trachea		30.375
Larval Carcass		13.45
Adult Head		19.4
Adult Eye		20.9
Adult Brain		28.3
Adult Thoracic-Abdominal Ganglion		26.1
Adult Crop		23.8
Adult Midgut		17.5
Adult Hindgut		21
Adult Malpighian Tubules		25.6
Adult Fat Body		16.8
Adult Salivary Gland		34.4
Adult Heart		19.75
Adult VirginFemale Spermatheca		30.1
Adult InseminatedFemale Spermatheca		32.4
Adult Ovary		71.4
Adult Testis		11.7
Adult Male Accessory Gland		28.3
Adult Carcass		15.3
Expression Level Scale		None Low Moderate

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		43.775
Larval Midgut		9.3
Larval Hindgut		12.2
Larval Malpighian Tubules		20.2
Larval Fat Body		23
Larval Salivary Gland		22.4
Larval Trachea		30.375
Larval Carcass		13.45
Adult Head		19.4
Adult Eye		20.9
Adult Brain		28.3
Adult Thoracic-Abdominal Ganglion		26.1
Adult Crop		23.8
Adult Midgut		17.5
Adult Hindgut		21
Adult Malpighian Tubules		25.6
Adult Fat Body		16.8
Adult Salivary Gland		34.4
Adult Heart		19.75
Adult VirginFemale Spermatheca		30.1
Adult InseminatedFemale Spermatheca		32.4
Adult Ovary		71.4
Adult Testis		11.7
Adult Male Accessory Gland		28.3
Adult Carcass		15.3
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		43.775
Larval Midgut		9.3
Larval Hindgut		12.2
Larval Malpighian Tubules		20.2
Larval Fat Body		23
Larval Salivary Gland		22.4
Larval Trachea		30.375
Larval Carcass		13.45
Adult Head		19.4
Adult Eye		20.9
Adult Brain		28.3
Adult Thoracic-Abdominal Ganglion		26.1
Adult Crop		23.8
Adult Midgut		17.5
Adult Hindgut		21
Adult Malpighian Tubules		25.6
Adult Fat Body		16.8
Adult Salivary Gland		34.4
Adult Heart		19.75
Adult VirginFemale Spermatheca		30.1
Adult InseminatedFemale Spermatheca		32.4
Adult Ovary		71.4
Adult Testis		11.7
Adult Male Accessory Gland		28.3
Adult Carcass		15.3
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		43.775
Larval Midgut		9.3
Larval Hindgut		12.2
Larval Malpighian Tubules		20.2
Larval Fat Body		23
Larval Salivary Gland		22.4
Larval Trachea		30.375
Larval Carcass		13.45
Adult Head		19.4
Adult Eye		20.9
Adult Brain		28.3
Adult Thoracic-Abdominal Ganglion		26.1
Adult Crop		23.8
Adult Midgut		17.5
Adult Hindgut		21
Adult Malpighian Tubules		25.6
Adult Fat Body		16.8
Adult Salivary Gland		34.4
Adult Heart		19.75
Adult VirginFemale Spermatheca		30.1
Adult InseminatedFemale Spermatheca		32.4
Adult Ovary		71.4
Adult Testis		11.7
Adult Male Accessory Gland		28.3
Adult Carcass		15.3
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	19.4
NA	Eye	20.9
NA	Brain	28.3
43.775	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	26.1
NA	Crop	23.8
9.3	Midgut	no informative data
12.2	Hindgut	21
20.2	Malpighian Tubules	no informative data
no informative data	Fat Body	no informative data
22.4	Salivary Gland	34.4
NA	Heart	19.75
30.375	Trachea	NA
NA	VirginFemale Spermatheca	30.1
NA	InseminatedFemale Spermatheca	32.4
NA	Ovary	71.4
NA	Testis	11.7
NA	Male Accessory Gland	28.3
no informative data	Carcass	no informative data

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		4
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		1
head, virgin 20-day female		3
head, mated 1-day female		3
head, mated 4-day female		2
head, mated 20-day female		1
head, mated 1-day male		3
head, mated 4-day male		2
head, mated 20-day male		4
salivary gland, larvae L3 wandering		2
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		2
digestive system, 4-day adult		2
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		6
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		4
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		4
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		1
head, virgin 20-day female		3
head, mated 1-day female		3
head, mated 4-day female		2
head, mated 20-day female		1
head, mated 1-day male		3
head, mated 4-day male		2
head, mated 20-day male		4
salivary gland, larvae L3 wandering		2
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		2
digestive system, 4-day adult		2
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		6
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		4
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		4
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		1
head, virgin 20-day female		3
head, mated 1-day female		3
head, mated 4-day female		2
head, mated 20-day female		1
head, mated 1-day male		3
head, mated 4-day male		2
head, mated 20-day male		4
salivary gland, larvae L3 wandering		2
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		2
digestive system, 4-day adult		2
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		6
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		4
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		4
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		1
head, virgin 20-day female		3
head, mated 1-day female		3
head, mated 4-day female		2
head, mated 20-day female		1
head, mated 1-day male		3
head, mated 4-day male		2
head, mated 20-day male		4
salivary gland, larvae L3 wandering		2
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		2
digestive system, 4-day adult		2
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		6
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		4
accessory gland, mated 4-day male		2
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		4
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		1
head, virgin 20-day female		3
head, mated 1-day female		3
head, mated 4-day female		2
head, mated 20-day female		1
head, mated 1-day male		3
head, mated 4-day male		2
head, mated 20-day male		4
salivary gland, larvae L3 wandering		2
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		2
digestive system, 4-day adult		2
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		6
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		4
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		4
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		1
head, virgin 20-day female		3
head, mated 1-day female		3
head, mated 4-day female		2
head, mated 20-day female		1
head, mated 1-day male		3
head, mated 4-day male		2
head, mated 20-day male		4
salivary gland, larvae L3 wandering		2
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		2
digestive system, 4-day adult		2
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		6
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		4
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		4
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		1
head, virgin 20-day female		3
head, mated 1-day female		3
head, mated 4-day female		2
head, mated 20-day female		1
head, mated 1-day male		3
head, mated 4-day male		2
head, mated 20-day male		4
salivary gland, larvae L3 wandering		2
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		2
digestive system, 4-day adult		2
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		6
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		4
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		4
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		1
head, virgin 20-day female		3
head, mated 1-day female		3
head, mated 4-day female		2
head, mated 20-day female		1
head, mated 1-day male		3
head, mated 4-day male		2
head, mated 20-day male		4
salivary gland, larvae L3 wandering		2
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		2
digestive system, 4-day adult		2
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		6
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		4
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		5
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		9
embryonic S1		7
embryonic S3		4
leg disc CME L1		4
wing disc CME-W2		4
wing disc ML-DmD8		4
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		11
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		5
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		7
mixed discs ML-DmD4-c1		4
CNS ML-DmBG1-c1		5
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		7
ovary fGS/OSS		7
ovary OSC		2
ovary OSS		3
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		5
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		9
embryonic S1		7
embryonic S3		4
leg disc CME L1		4
wing disc CME-W2		4
wing disc ML-DmD8		4
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		11
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		5
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		7
mixed discs ML-DmD4-c1		4
CNS ML-DmBG1-c1		5
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		7
ovary fGS/OSS		7
ovary OSC		2
ovary OSS		3
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		5
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		9
embryonic S1		7
embryonic S3		4
leg disc CME L1		4
wing disc CME-W2		4
wing disc ML-DmD8		4
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		11
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		5
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		7
mixed discs ML-DmD4-c1		4
CNS ML-DmBG1-c1		5
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		7
ovary fGS/OSS		7
ovary OSC		2
ovary OSS		3
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		5
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		9
embryonic S1		7
embryonic S3		4
leg disc CME L1		4
wing disc CME-W2		4
wing disc ML-DmD8		4
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		11
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		5
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		7
mixed discs ML-DmD4-c1		4
CNS ML-DmBG1-c1		5
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		7
ovary fGS/OSS		7
ovary OSC		2
ovary OSS		3
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		5
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		9
embryonic S1		7
embryonic S3		4
leg disc CME L1		4
wing disc CME-W2		4
wing disc ML-DmD8		4
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		11
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		5
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		7
mixed discs ML-DmD4-c1		4
CNS ML-DmBG1-c1		5
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		7
ovary fGS/OSS		7
ovary OSC		2
ovary OSS		3
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		5
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		9
embryonic S1		7
embryonic S3		4
leg disc CME L1		4
wing disc CME-W2		4
wing disc ML-DmD8		4
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		11
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		5
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		7
mixed discs ML-DmD4-c1		4
CNS ML-DmBG1-c1		5
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		7
ovary fGS/OSS		7
ovary OSC		2
ovary OSS		3
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		5
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		9
embryonic S1		7
embryonic S3		4
leg disc CME L1		4
wing disc CME-W2		4
wing disc ML-DmD8		4
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		11
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		5
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		7
mixed discs ML-DmD4-c1		4
CNS ML-DmBG1-c1		5
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		7
ovary fGS/OSS		7
ovary OSC		2
ovary OSS		3
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		5
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		9
embryonic S1		7
embryonic S3		4
leg disc CME L1		4
wing disc CME-W2		4
wing disc ML-DmD8		4
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		11
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		5
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		7
mixed discs ML-DmD4-c1		4
CNS ML-DmBG1-c1		5
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		7
ovary fGS/OSS		7
ovary OSC		2
ovary OSS		3
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		4
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		5
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		0
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		3
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		3
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		1
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		4
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		5
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		0
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		3
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		3
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		1
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		4
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		5
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		0
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		3
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		3
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		4
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		5
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		0
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		3
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		3
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		1
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		4
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		5
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		0
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		3
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		3
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		1
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		4
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		5
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		0
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		3
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		3
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		1
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		4
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		5
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		0
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		3
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		3
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		4
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		5
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		0
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		3
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		3
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010, Graveley et al., 2011)

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0083952

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

S.C3L002478;CG14103-RA

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of CG34116	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG34116	Class	Mutagen	Stocks	Known lesion
CG34116^NIG.14103R		in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{NIG.14103R}

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 1 unique term )

There is no information supporting a biological process or cellular component term for this gene.

(Based on a review of available data on: 2006-05-23)

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 1 term )

Molecular Function

CV term

Evidence

References

DNA binding

inferred from electronic annotation with InterPro:IPR003656

(FlyBase Curators et al., 2004-)

Biological Process ( 0 terms)

Cellular Component ( 0 terms)

Sequence Ontology: Class of Gene

nuclear_gene

(FlyBase Genome Annotators, 2006)

protein_coding_gene

(FlyBase Genome Annotators, 2006)

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG34116 allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0083952

Orthologs

OrthoDB Orthologs (13) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG64J34F

Dipteran inclusive ortholog search

No orthologs identified

Insect inclusive ortholog search

No orthologs identified

Arthropod inclusive ortholog search

No orthologs identified

Metazoa inclusive ortholog search

No orthologs identified

Orthologs in Drosophila Species (EOG64J34F)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA23501

Drosophila persimilis

Dper\GL15680

Drosophila willistoni

Dwil\GK16703

Drosophila virilis

Dvir\GJ14005

Drosophila mojavensis

Dmoj\GI13669

Drosophila grimshawi

Dgri\GH16915

Orthologs in non-Drosophila Dipterans (None identified)

No non-Drosophilid orthologies identified

Orthologs in non-Dipteran Insects (None identified)

No non-Dipteran orthologies identified

Orthologs in non-Insect Arthropods (None identified)

No non-Insect Arthropod orthologies identified

Orthologs in non-Arthropod Metazoa (None identified)

No non-Arthropod Metazoa orthologies identified

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 0 )

Genomic Clones ( 1 )

BACR01B21

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 2 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

IP21319

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

ESG018c.E21_A09

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

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FBgn0083952

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

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4379912

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

The 5' part of release 2 annotation CG14103 (which was deleted in the release 3.1 version of CG14103) has been restored as a distinct annotation, CG34116, in release 5.1 of the genome annotation.

(FlyBase Genome Annotators, 2006)

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

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NM_001043151

RefSeq (Proteins)

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NP_001036616

DDBJ / EMBL / GenBank

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ABI31263

Entrez Gene - A searchable database of RefSeq genes.

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4379912

UniProtKB/TrEMBL

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Q0E8D0

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

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Zinc finger, BED-type predicted (IPR003656)

Linkouts

DroID - A comprehensive database of gene and protein interactions.

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FBgn0083952

DRSC - Results from RNAi screens.

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FBgn0083952

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

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FBgn0083952

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

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S.C3L002478;CG14103-RA

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

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FBgn0083952

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

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4379912

modMine - Data generated by the modENCODE project.

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FBgn0083952

Synonyms & Secondary IDs ( 2 )

Reported As

Symbol Synonym

CG14103

(FlyBase Genome Annotators, 2006)

CG34116

(Cooper et al., 2010, Japanese National Institute of Genetics, 2012.5.21)

Name Synonym

Secondary FlyBase IDs

References ( 7 )

Research paper

Cooper et al., 2010, Genetics 185(3): 811--822: Molecular Genetic Analysis of Chd3 and Polytene Chromosome Region 76B-D in Drosophila melanogaster. [FBrf0211329]

Supplementary material

Graveley et al., 2011, Nature 471(7339):: Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980]
The modENCODE Consortium, 2010, Science 330(6012):: DataS14: Gene co-expression clusters. [FBrf0213979]

Personal communication to FlyBase

FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.: Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]

FlyBase analysis

FlyBase Genome Annotators, 2006, Changes affecting gene model number or type in release 5.1 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in release 5.1 of the annotated D.melanogaster genome. [FBrf0191550]
FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase.: Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398]

Stock list

Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY.: RNAi stocks available from NIG-FLY. [FBrf0218457]