Gene Dmel\CG34150

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General Information

Symbol

Dmel\CG34150

Species

D. melanogaster

Name

Annotation symbol

CG34150

Feature type

protein_coding_gene

FlyBase ID

FBgn0083986

Gene Model Status

Current

Stock availability

1 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

96A23-96A23

Sequence location

3R:20,639,984..20,640,652 [+]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG34150 (FBgn0083986). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Complex 1 LYR protein. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 06-12 and 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1626728_at partially aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG34150: 6 out of 12 probes fall into this exonic region. Gene sequence location is 3R:20639984..20640652.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

96A23-96A23

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG34150 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.45

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG34150-RB

FBtr0301004

NM_001043291

495

137

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG34150-PB

FBpp0290226

15.5

137

9.23

NP_001036756

ABI31206

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Complex 1 LYR protein (IPR008011)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q0KI15

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 3

organism | ubiquitous

(Fisher et al., 2012)

Comment:maternally deposited

embryonic stage 4 -- 6

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 7 -- 8

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 9 -- 10

anterior endoderm

(Fisher et al., 2012)

organism | ubiquitous

(Fisher et al., 2012)

posterior endoderm

(Fisher et al., 2012)

embryonic stage 11 -- 12

adult posterior midgut primordium

(Fisher et al., 2012)

anterior midgut primordium

(Fisher et al., 2012)

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 13 -- 16

embryonic/larval midgut

(Fisher et al., 2012)

organism | ubiquitous

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		11.675
Larval Midgut		12.3
Larval Hindgut		8.9
Larval Malpighian Tubules		11.7
Larval Fat Body		16.1
Larval Salivary Gland		14.6
Larval Trachea		4.55
Larval Carcass		11.325
Adult Head		17.2
Adult Eye		17.975
Adult Brain		21.1
Adult Thoracic-Abdominal Ganglion		24.6
Adult Crop		17.2
Adult Midgut		9.4
Adult Hindgut		9.3
Adult Malpighian Tubules		14.4
Adult Fat Body		8.1
Adult Salivary Gland		23.4
Adult Heart		10.875
Adult VirginFemale Spermatheca		3.2
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		10.4
Adult Testis		20.1
Adult Male Accessory Gland		15.3
Adult Carcass		24.1
Expression Level Scale		None Low

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		11.675
Larval Midgut		12.3
Larval Hindgut		8.9
Larval Malpighian Tubules		11.7
Larval Fat Body		16.1
Larval Salivary Gland		14.6
Larval Trachea		4.55
Larval Carcass		11.325
Adult Head		17.2
Adult Eye		17.975
Adult Brain		21.1
Adult Thoracic-Abdominal Ganglion		24.6
Adult Crop		17.2
Adult Midgut		9.4
Adult Hindgut		9.3
Adult Malpighian Tubules		14.4
Adult Fat Body		8.1
Adult Salivary Gland		23.4
Adult Heart		10.875
Adult VirginFemale Spermatheca		3.2
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		10.4
Adult Testis		20.1
Adult Male Accessory Gland		15.3
Adult Carcass		24.1
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		11.675
Larval Midgut		12.3
Larval Hindgut		8.9
Larval Malpighian Tubules		11.7
Larval Fat Body		16.1
Larval Salivary Gland		14.6
Larval Trachea		4.55
Larval Carcass		11.325
Adult Head		17.2
Adult Eye		17.975
Adult Brain		21.1
Adult Thoracic-Abdominal Ganglion		24.6
Adult Crop		17.2
Adult Midgut		9.4
Adult Hindgut		9.3
Adult Malpighian Tubules		14.4
Adult Fat Body		8.1
Adult Salivary Gland		23.4
Adult Heart		10.875
Adult VirginFemale Spermatheca		3.2
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		10.4
Adult Testis		20.1
Adult Male Accessory Gland		15.3
Adult Carcass		24.1
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		11.675
Larval Midgut		12.3
Larval Hindgut		8.9
Larval Malpighian Tubules		11.7
Larval Fat Body		16.1
Larval Salivary Gland		14.6
Larval Trachea		4.55
Larval Carcass		11.325
Adult Head		17.2
Adult Eye		17.975
Adult Brain		21.1
Adult Thoracic-Abdominal Ganglion		24.6
Adult Crop		17.2
Adult Midgut		9.4
Adult Hindgut		9.3
Adult Malpighian Tubules		14.4
Adult Fat Body		8.1
Adult Salivary Gland		23.4
Adult Heart		10.875
Adult VirginFemale Spermatheca		3.2
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		10.4
Adult Testis		20.1
Adult Male Accessory Gland		15.3
Adult Carcass		24.1
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		11.675
Larval Midgut		12.3
Larval Hindgut		8.9
Larval Malpighian Tubules		11.7
Larval Fat Body		16.1
Larval Salivary Gland		14.6
Larval Trachea		4.55
Larval Carcass		11.325
Adult Head		17.2
Adult Eye		17.975
Adult Brain		21.1
Adult Thoracic-Abdominal Ganglion		24.6
Adult Crop		17.2
Adult Midgut		9.4
Adult Hindgut		9.3
Adult Malpighian Tubules		14.4
Adult Fat Body		8.1
Adult Salivary Gland		23.4
Adult Heart		10.875
Adult VirginFemale Spermatheca		3.2
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		10.4
Adult Testis		20.1
Adult Male Accessory Gland		15.3
Adult Carcass		24.1
Expression Level Scale		None Low

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		11.675
Larval Midgut		12.3
Larval Hindgut		8.9
Larval Malpighian Tubules		11.7
Larval Fat Body		16.1
Larval Salivary Gland		14.6
Larval Trachea		4.55
Larval Carcass		11.325
Adult Head		17.2
Adult Eye		17.975
Adult Brain		21.1
Adult Thoracic-Abdominal Ganglion		24.6
Adult Crop		17.2
Adult Midgut		9.4
Adult Hindgut		9.3
Adult Malpighian Tubules		14.4
Adult Fat Body		8.1
Adult Salivary Gland		23.4
Adult Heart		10.875
Adult VirginFemale Spermatheca		3.2
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		10.4
Adult Testis		20.1
Adult Male Accessory Gland		15.3
Adult Carcass		24.1
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		11.675
Larval Midgut		12.3
Larval Hindgut		8.9
Larval Malpighian Tubules		11.7
Larval Fat Body		16.1
Larval Salivary Gland		14.6
Larval Trachea		4.55
Larval Carcass		11.325
Adult Head		17.2
Adult Eye		17.975
Adult Brain		21.1
Adult Thoracic-Abdominal Ganglion		24.6
Adult Crop		17.2
Adult Midgut		9.4
Adult Hindgut		9.3
Adult Malpighian Tubules		14.4
Adult Fat Body		8.1
Adult Salivary Gland		23.4
Adult Heart		10.875
Adult VirginFemale Spermatheca		3.2
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		10.4
Adult Testis		20.1
Adult Male Accessory Gland		15.3
Adult Carcass		24.1
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		11.675
Larval Midgut		12.3
Larval Hindgut		8.9
Larval Malpighian Tubules		11.7
Larval Fat Body		16.1
Larval Salivary Gland		14.6
Larval Trachea		4.55
Larval Carcass		11.325
Adult Head		17.2
Adult Eye		17.975
Adult Brain		21.1
Adult Thoracic-Abdominal Ganglion		24.6
Adult Crop		17.2
Adult Midgut		9.4
Adult Hindgut		9.3
Adult Malpighian Tubules		14.4
Adult Fat Body		8.1
Adult Salivary Gland		23.4
Adult Heart		10.875
Adult VirginFemale Spermatheca		3.2
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		10.4
Adult Testis		20.1
Adult Male Accessory Gland		15.3
Adult Carcass		24.1
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	no informative data
NA	Eye	no informative data
NA	Brain	21.1
no informative data	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	24.6
NA	Crop	no informative data
no informative data	Midgut	9.4
8.9	Hindgut	9.3
no informative data	Malpighian Tubules	no informative data
no informative data	Fat Body	8.1
no informative data	Salivary Gland	no informative data
NA	Heart	no informative data
4.55	Trachea	NA
NA	VirginFemale Spermatheca	3.2
NA	InseminatedFemale Spermatheca	4.3
NA	Ovary	no informative data
NA	Testis	20.1
NA	Male Accessory Gland	no informative data
no informative data	Carcass	no informative data

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		12
central nervous system, larvae L3		7
central nervous system, pupae P8		5
head, virgin 1-day female		7
head, virgin 4-day female		5
head, virgin 20-day female		7
head, mated 1-day female		6
head, mated 4-day female		8
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		13
head, mated 20-day male		14
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		5
digestive system, 1-day adult		6
digestive system, 4-day adult		6
digestive system, 20-day adult		4
fat body, larvae L3 wandering		2
fat body, white prepupae		3
fat body, pupae P8		0
carcass, larvae L3 wandering		8
carcass, 1-day adult		9
carcass, 4-day adult		11
carcass, 20-day adult		13
ovary, virgin 4-day female		12
ovary, mated 4-day female		9
testis, mated 4-day male		16
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		12
central nervous system, larvae L3		7
central nervous system, pupae P8		5
head, virgin 1-day female		7
head, virgin 4-day female		5
head, virgin 20-day female		7
head, mated 1-day female		6
head, mated 4-day female		8
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		13
head, mated 20-day male		14
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		5
digestive system, 1-day adult		6
digestive system, 4-day adult		6
digestive system, 20-day adult		4
fat body, larvae L3 wandering		2
fat body, white prepupae		3
fat body, pupae P8		0
carcass, larvae L3 wandering		8
carcass, 1-day adult		9
carcass, 4-day adult		11
carcass, 20-day adult		13
ovary, virgin 4-day female		12
ovary, mated 4-day female		9
testis, mated 4-day male		16
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		12
central nervous system, larvae L3		7
central nervous system, pupae P8		5
head, virgin 1-day female		7
head, virgin 4-day female		5
head, virgin 20-day female		7
head, mated 1-day female		6
head, mated 4-day female		8
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		13
head, mated 20-day male		14
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		5
digestive system, 1-day adult		6
digestive system, 4-day adult		6
digestive system, 20-day adult		4
fat body, larvae L3 wandering		2
fat body, white prepupae		3
fat body, pupae P8		0
carcass, larvae L3 wandering		8
carcass, 1-day adult		9
carcass, 4-day adult		11
carcass, 20-day adult		13
ovary, virgin 4-day female		12
ovary, mated 4-day female		9
testis, mated 4-day male		16
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		12
central nervous system, larvae L3		7
central nervous system, pupae P8		5
head, virgin 1-day female		7
head, virgin 4-day female		5
head, virgin 20-day female		7
head, mated 1-day female		6
head, mated 4-day female		8
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		13
head, mated 20-day male		14
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		5
digestive system, 1-day adult		6
digestive system, 4-day adult		6
digestive system, 20-day adult		4
fat body, larvae L3 wandering		2
fat body, white prepupae		3
fat body, pupae P8		0
carcass, larvae L3 wandering		8
carcass, 1-day adult		9
carcass, 4-day adult		11
carcass, 20-day adult		13
ovary, virgin 4-day female		12
ovary, mated 4-day female		9
testis, mated 4-day male		16
accessory gland, mated 4-day male		6
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		12
central nervous system, larvae L3		7
central nervous system, pupae P8		5
head, virgin 1-day female		7
head, virgin 4-day female		5
head, virgin 20-day female		7
head, mated 1-day female		6
head, mated 4-day female		8
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		13
head, mated 20-day male		14
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		5
digestive system, 1-day adult		6
digestive system, 4-day adult		6
digestive system, 20-day adult		4
fat body, larvae L3 wandering		2
fat body, white prepupae		3
fat body, pupae P8		0
carcass, larvae L3 wandering		8
carcass, 1-day adult		9
carcass, 4-day adult		11
carcass, 20-day adult		13
ovary, virgin 4-day female		12
ovary, mated 4-day female		9
testis, mated 4-day male		16
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		12
central nervous system, larvae L3		7
central nervous system, pupae P8		5
head, virgin 1-day female		7
head, virgin 4-day female		5
head, virgin 20-day female		7
head, mated 1-day female		6
head, mated 4-day female		8
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		13
head, mated 20-day male		14
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		5
digestive system, 1-day adult		6
digestive system, 4-day adult		6
digestive system, 20-day adult		4
fat body, larvae L3 wandering		2
fat body, white prepupae		3
fat body, pupae P8		0
carcass, larvae L3 wandering		8
carcass, 1-day adult		9
carcass, 4-day adult		11
carcass, 20-day adult		13
ovary, virgin 4-day female		12
ovary, mated 4-day female		9
testis, mated 4-day male		16
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		12
central nervous system, larvae L3		7
central nervous system, pupae P8		5
head, virgin 1-day female		7
head, virgin 4-day female		5
head, virgin 20-day female		7
head, mated 1-day female		6
head, mated 4-day female		8
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		13
head, mated 20-day male		14
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		5
digestive system, 1-day adult		6
digestive system, 4-day adult		6
digestive system, 20-day adult		4
fat body, larvae L3 wandering		2
fat body, white prepupae		3
fat body, pupae P8		0
carcass, larvae L3 wandering		8
carcass, 1-day adult		9
carcass, 4-day adult		11
carcass, 20-day adult		13
ovary, virgin 4-day female		12
ovary, mated 4-day female		9
testis, mated 4-day male		16
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		12
central nervous system, larvae L3		7
central nervous system, pupae P8		5
head, virgin 1-day female		7
head, virgin 4-day female		5
head, virgin 20-day female		7
head, mated 1-day female		6
head, mated 4-day female		8
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		13
head, mated 20-day male		14
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		5
digestive system, 1-day adult		6
digestive system, 4-day adult		6
digestive system, 20-day adult		4
fat body, larvae L3 wandering		2
fat body, white prepupae		3
fat body, pupae P8		0
carcass, larvae L3 wandering		8
carcass, 1-day adult		9
carcass, 4-day adult		11
carcass, 20-day adult		13
ovary, virgin 4-day female		12
ovary, mated 4-day female		9
testis, mated 4-day male		16
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 06-12 and 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in stages of adults of both sexes.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		2
embryo 04-06hr		6
embryo 06-08hr		15
embryo 08-10hr		16
embryo 10-12hr		20
embryo 12-14hr		18
embryo 14-16hr		12
embryo 16-18hr		16
embryo 18-20hr		12
embryo 20-22hr		16
embryo 22-24hr		20
larva L1		19
larva L2		28
larva L3 12hr old		24
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		15
white prepupae new		11
white prepupae 12hr		14
white prepupae 24hr		15
pupae 2d postWPP		23
pupae 3d postWPP		38
pupae 4d postWPP		20
adult male 01day		27
adult male 05day		30
adult male 30day		24
adult female 01day		16
adult female 05day		22
adult female 30day		21
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		2
embryo 04-06hr		6
embryo 06-08hr		15
embryo 08-10hr		16
embryo 10-12hr		20
embryo 12-14hr		18
embryo 14-16hr		12
embryo 16-18hr		16
embryo 18-20hr		12
embryo 20-22hr		16
embryo 22-24hr		20
larva L1		19
larva L2		(28)
larva L3 12hr old		24
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		15
white prepupae new		11
white prepupae 12hr		14
white prepupae 24hr		15
pupae 2d postWPP		23
pupae 3d postWPP		(38)
pupae 4d postWPP		20
adult male 01day		(27)
adult male 05day		(30)
adult male 30day		24
adult female 01day		16
adult female 05day		22
adult female 30day		21
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		2
embryo 04-06hr		6
embryo 06-08hr		15
embryo 08-10hr		16
embryo 10-12hr		20
embryo 12-14hr		18
embryo 14-16hr		12
embryo 16-18hr		16
embryo 18-20hr		12
embryo 20-22hr		16
embryo 22-24hr		20
larva L1		19
larva L2		28
larva L3 12hr old		24
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		15
white prepupae new		11
white prepupae 12hr		14
white prepupae 24hr		15
pupae 2d postWPP		23
pupae 3d postWPP		38
pupae 4d postWPP		20
adult male 01day		27
adult male 05day		30
adult male 30day		24
adult female 01day		16
adult female 05day		22
adult female 30day		21
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		2
embryo 04-06hr		6
embryo 06-08hr		15
embryo 08-10hr		16
embryo 10-12hr		20
embryo 12-14hr		18
embryo 14-16hr		12
embryo 16-18hr		16
embryo 18-20hr		12
embryo 20-22hr		16
embryo 22-24hr		20
larva L1		19
larva L2		28
larva L3 12hr old		24
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		15
white prepupae new		11
white prepupae 12hr		14
white prepupae 24hr		15
pupae 2d postWPP		23
pupae 3d postWPP		38
pupae 4d postWPP		20
adult male 01day		27
adult male 05day		30
adult male 30day		24
adult female 01day		16
adult female 05day		22
adult female 30day		21
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		2
embryo 04-06hr		6
embryo 06-08hr		15
embryo 08-10hr		16
embryo 10-12hr		20
embryo 12-14hr		18
embryo 14-16hr		12
embryo 16-18hr		16
embryo 18-20hr		12
embryo 20-22hr		16
embryo 22-24hr		20
larva L1		19
larva L2		28
larva L3 12hr old		24
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		15
white prepupae new		11
white prepupae 12hr		14
white prepupae 24hr		15
pupae 2d postWPP		23
pupae 3d postWPP		38
pupae 4d postWPP		20
adult male 01day		27
adult male 05day		30
adult male 30day		24
adult female 01day		16
adult female 05day		22
adult female 30day		21
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		2
embryo 04-06hr		6
embryo 06-08hr		15
embryo 08-10hr		16
embryo 10-12hr		20
embryo 12-14hr		18
embryo 14-16hr		12
embryo 16-18hr		16
embryo 18-20hr		12
embryo 20-22hr		16
embryo 22-24hr		20
larva L1		19
larva L2		28
larva L3 12hr old		24
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		15
white prepupae new		11
white prepupae 12hr		14
white prepupae 24hr		15
pupae 2d postWPP		23
pupae 3d postWPP		(38)
pupae 4d postWPP		20
adult male 01day		27
adult male 05day		30
adult male 30day		24
adult female 01day		16
adult female 05day		22
adult female 30day		21
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		2
embryo 04-06hr		6
embryo 06-08hr		15
embryo 08-10hr		16
embryo 10-12hr		20
embryo 12-14hr		18
embryo 14-16hr		12
embryo 16-18hr		16
embryo 18-20hr		12
embryo 20-22hr		16
embryo 22-24hr		20
larva L1		19
larva L2		28
larva L3 12hr old		24
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		15
white prepupae new		11
white prepupae 12hr		14
white prepupae 24hr		15
pupae 2d postWPP		23
pupae 3d postWPP		38
pupae 4d postWPP		20
adult male 01day		27
adult male 05day		30
adult male 30day		24
adult female 01day		16
adult female 05day		22
adult female 30day		21
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		2
embryo 04-06hr		6
embryo 06-08hr		15
embryo 08-10hr		16
embryo 10-12hr		20
embryo 12-14hr		18
embryo 14-16hr		12
embryo 16-18hr		16
embryo 18-20hr		12
embryo 20-22hr		16
embryo 22-24hr		20
larva L1		19
larva L2		28
larva L3 12hr old		24
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		15
white prepupae new		11
white prepupae 12hr		14
white prepupae 24hr		15
pupae 2d postWPP		23
pupae 3d postWPP		38
pupae 4d postWPP		20
adult male 01day		27
adult male 05day		30
adult male 30day		24
adult female 01day		16
adult female 05day		22
adult female 30day		21
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		25
Schneider line 2 Sg4		14
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		25
embryonic S1		11
embryonic S3		15
leg disc CME L1		13
wing disc CME-W2		22
wing disc ML-DmD8		12
wing disc ML-DmD9		10
wing disc ML-DmD16-c3		9
wing disc ML-DmD21		20
wing disc ML-DmD32		7
haltere disc ML-DmD17-c3		12
eye-antennal disc ML-DmD11		15
antennal disc ML-DmD20-c5		13
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		22
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		9
ovary fGS/OSS		7
ovary OSC		12
ovary OSS		6
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		25
Schneider line 2 Sg4		14
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		25
embryonic S1		11
embryonic S3		15
leg disc CME L1		13
wing disc CME-W2		22
wing disc ML-DmD8		12
wing disc ML-DmD9		10
wing disc ML-DmD16-c3		9
wing disc ML-DmD21		20
wing disc ML-DmD32		7
haltere disc ML-DmD17-c3		12
eye-antennal disc ML-DmD11		15
antennal disc ML-DmD20-c5		13
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		22
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		9
ovary fGS/OSS		7
ovary OSC		12
ovary OSS		6
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		25
Schneider line 2 Sg4		14
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		25
embryonic S1		11
embryonic S3		15
leg disc CME L1		13
wing disc CME-W2		22
wing disc ML-DmD8		12
wing disc ML-DmD9		10
wing disc ML-DmD16-c3		9
wing disc ML-DmD21		20
wing disc ML-DmD32		7
haltere disc ML-DmD17-c3		12
eye-antennal disc ML-DmD11		15
antennal disc ML-DmD20-c5		13
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		22
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		9
ovary fGS/OSS		7
ovary OSC		12
ovary OSS		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		25
Schneider line 2 Sg4		14
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		25
embryonic S1		11
embryonic S3		15
leg disc CME L1		13
wing disc CME-W2		22
wing disc ML-DmD8		12
wing disc ML-DmD9		10
wing disc ML-DmD16-c3		9
wing disc ML-DmD21		20
wing disc ML-DmD32		7
haltere disc ML-DmD17-c3		12
eye-antennal disc ML-DmD11		15
antennal disc ML-DmD20-c5		13
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		22
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		9
ovary fGS/OSS		7
ovary OSC		12
ovary OSS		6
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		25
Schneider line 2 Sg4		14
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		25
embryonic S1		11
embryonic S3		15
leg disc CME L1		13
wing disc CME-W2		22
wing disc ML-DmD8		12
wing disc ML-DmD9		10
wing disc ML-DmD16-c3		9
wing disc ML-DmD21		20
wing disc ML-DmD32		7
haltere disc ML-DmD17-c3		12
eye-antennal disc ML-DmD11		15
antennal disc ML-DmD20-c5		13
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		22
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		9
ovary fGS/OSS		7
ovary OSC		12
ovary OSS		6
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		25
Schneider line 2 Sg4		14
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		25
embryonic S1		11
embryonic S3		15
leg disc CME L1		13
wing disc CME-W2		22
wing disc ML-DmD8		12
wing disc ML-DmD9		10
wing disc ML-DmD16-c3		9
wing disc ML-DmD21		20
wing disc ML-DmD32		7
haltere disc ML-DmD17-c3		12
eye-antennal disc ML-DmD11		15
antennal disc ML-DmD20-c5		13
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		22
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		9
ovary fGS/OSS		7
ovary OSC		12
ovary OSS		6
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		25
Schneider line 2 Sg4		14
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		25
embryonic S1		11
embryonic S3		15
leg disc CME L1		13
wing disc CME-W2		22
wing disc ML-DmD8		12
wing disc ML-DmD9		10
wing disc ML-DmD16-c3		9
wing disc ML-DmD21		20
wing disc ML-DmD32		7
haltere disc ML-DmD17-c3		12
eye-antennal disc ML-DmD11		15
antennal disc ML-DmD20-c5		13
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		22
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		9
ovary fGS/OSS		7
ovary OSC		12
ovary OSS		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		25
Schneider line 2 Sg4		14
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		25
embryonic S1		11
embryonic S3		15
leg disc CME L1		13
wing disc CME-W2		22
wing disc ML-DmD8		12
wing disc ML-DmD9		10
wing disc ML-DmD16-c3		9
wing disc ML-DmD21		20
wing disc ML-DmD32		7
haltere disc ML-DmD17-c3		12
eye-antennal disc ML-DmD11		15
antennal disc ML-DmD20-c5		13
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		22
CNS ML-DmBG2-c2		6
tumorous blood cells mbn2		9
ovary fGS/OSS		7
ovary OSC		12
ovary OSS		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		0
heat shock, 4-day adult		5
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		9
Cadmium 100 mM 48 hrs, 4-day adult		4
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		7
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		11
Ethanol 10% 3 hrs, larvae L3		5
Caffeine 1.5 mg/ml 4 hrs, larvae L3		7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		5
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		8
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		4
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		0
heat shock, 4-day adult		5
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		9
Cadmium 100 mM 48 hrs, 4-day adult		4
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		7
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		11
Ethanol 10% 3 hrs, larvae L3		5
Caffeine 1.5 mg/ml 4 hrs, larvae L3		7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		5
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		8
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		4
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		0
heat shock, 4-day adult		5
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		9
Cadmium 100 mM 48 hrs, 4-day adult		4
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		7
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		11
Ethanol 10% 3 hrs, larvae L3		5
Caffeine 1.5 mg/ml 4 hrs, larvae L3		7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		5
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		8
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		4
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		0
heat shock, 4-day adult		5
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		9
Cadmium 100 mM 48 hrs, 4-day adult		4
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		7
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		11
Ethanol 10% 3 hrs, larvae L3		5
Caffeine 1.5 mg/ml 4 hrs, larvae L3		7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		5
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		8
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		4
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		0
heat shock, 4-day adult		5
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		9
Cadmium 100 mM 48 hrs, 4-day adult		4
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		7
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		11
Ethanol 10% 3 hrs, larvae L3		5
Caffeine 1.5 mg/ml 4 hrs, larvae L3		7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		5
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		8
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		4
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		0
heat shock, 4-day adult		5
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		9
Cadmium 100 mM 48 hrs, 4-day adult		4
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		7
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		11
Ethanol 10% 3 hrs, larvae L3		5
Caffeine 1.5 mg/ml 4 hrs, larvae L3		7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		5
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		8
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		4
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		0
heat shock, 4-day adult		5
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		9
Cadmium 100 mM 48 hrs, 4-day adult		4
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		7
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		11
Ethanol 10% 3 hrs, larvae L3		5
Caffeine 1.5 mg/ml 4 hrs, larvae L3		7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		5
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		8
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		4
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		0
heat shock, 4-day adult		5
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		9
Cadmium 100 mM 48 hrs, 4-day adult		4
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		7
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		11
Ethanol 10% 3 hrs, larvae L3		5
Caffeine 1.5 mg/ml 4 hrs, larvae L3		7
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		5
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		8
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		4
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010, Graveley et al., 2011)

External Data & Images

Linkouts

BDGP expression data

•

IP18284

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0083986

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

S.C3R002771

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 1 )

For All Classical Alleles Show

Allele of CG34150	Class	Mutagen	Stocks	Known lesion
CG34150^f00361			1	--

Alleles Carried on Transgenic Constructs ( 0 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG34150	Class	Mutagen	Stocks	Known lesion

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{WH}CG34150^f00361

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

gene_with_edited_transcript

(Graveley et al., 2011)

nuclear_gene

(FlyBase Genome Annotators, 2006)

protein_coding_gene

(FlyBase Genome Annotators, 2006)

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG34150 allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0083986

Orthologs

OrthoDB Orthologs (40) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG6549K9

Dipteran inclusive ortholog search

EOG6B5PFP

Insect inclusive ortholog search

EOG6D51VP

Arthropod inclusive ortholog search

EOG6J6Q7T

Metazoa inclusive ortholog search

EOG6XSZKQ

Orthologs in Drosophila Species (EOG6549K9)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA26851

Drosophila persimilis

Dper\GL13630

Drosophila willistoni

Dwil\GK14109

Drosophila virilis

Dvir\GJ23543

Drosophila mojavensis

Dmoj\GI23568

Drosophila grimshawi

Dgri\GH19114

Orthologs in non-Drosophila Dipterans (EOG6B5PFP)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL009961

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL015292

Anopheles gambiae

Malaria mosquito

Agam\AGAP006878

Orthologs in non-Dipteran Insects (EOG6D51VP)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Apis mellifera

Western honey bee

Amel\GB41412

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG008813

Acromyrmex echinatior

Panamanian leafcutter ant

Aech\AECH19450

Atta cephalotes

Leafcutter ant

Acep\ACEP24635

Camponotus floridanus

Florida carpenter ant

Cflo\CFLO11505

Harpegnathos saltator

Jerdons jumping ant

Hsal\HSAL20274

Linepithema humile

Argentine ant

Lhum\LH25447

Pogonomyrmex barbatus

Red harvester ant

Pbar\PB22389

Solenopsis invicta

Red fire ant

Sinv\SINV12700

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI004138

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI006534

Bombyx mori

Silkmoth

Bmor\BGIBMGA002454

Tribolium castaneum

Red flour beetle

Tcas\GLEAN_14889

Tribolium castaneum

Red flour beetle

Tcas\GLEAN_14889

Orthologs in non-Insect Arthropods (EOG6J6Q7T)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Daphnia pulex

Water flea

Dpux\JGI_V11_310790

Ixodes scapularis

Deer tick

Isca\ISCW024287

Ixodes scapularis

Deer tick

Isca\ISCW024653

Orthologs in non-Arthropod Metazoa (EOG6XSZKQ)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_028632gn

Danio rerio

Zebrafish

Drer\zgc:165597

Xenopus tropicalis

Western clawed frog

Xtro\lyrm7

Gallus gallus

Domestic chicken

Ggal\LYRM7

Mus musculus

House mouse

Mmus\Lyrm7

Rattus norvegicus

Norway rat

Rnor\ENSRNOG00000010340

Rattus norvegicus

Norway rat

Rnor\ENSRNOG00000028529

Homo sapiens

Human

Hsap\LYRM7

Human Orthologs (1)

Gene

OMIM

HGNC

Hsap\LYRM7

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 1 )

Harvard

PBac{WH}CG34150^f00361

Genomic Clones ( 1 )

BACR33F18

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 7 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0083986

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

4379863

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Other Comments

New annotation (CG34150) in release 5.1 of the genome annotation.

(FlyBase Genome Annotators, 2006)

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_001043291

RefSeq (Proteins)

•

NP_001036756

DDBJ / EMBL / GenBank

•

ABI31206

Entrez Gene - A searchable database of RefSeq genes.

•

4379863

UniProtKB/TrEMBL

•

Q0KI15

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Complex 1 LYR protein (IPR008011)

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

•

IP18284

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0083986

DRSC - Results from RNAi screens.

•

FBgn0083986

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0083986

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

S.C3R002771

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0083986

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

4379863

modMine - Data generated by the modENCODE project.

•

FBgn0083986

Synonyms & Secondary IDs ( 1 )

Reported As

Symbol Synonym

CG34150

Name Synonym

Secondary FlyBase IDs

References ( 6 )

Supplementary material

Graveley et al., 2011, Nature 471(7339):: Supplementary Table 29. Summary of A-to-I RNA Editing Sites Discovered. [FBrf0213715]
Graveley et al., 2011, Nature 471(7339):: Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980]
The modENCODE Consortium, 2010, Science 330(6012):: DataS14: Gene co-expression clusters. [FBrf0213979]

FlyBase analysis

FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations.: Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
FlyBase Genome Annotators, 2006, Changes affecting gene model number or type in release 5.1 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in release 5.1 of the annotated D.melanogaster genome. [FBrf0191550]

Website

Fisher et al., 2012, BDGP insitu homepage: BDGP insitu homepage [FBrf0219073]