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Gene Dmoj\β4GalT7

General Information
Symbol	Dmoj\β4GalT7	Species	D. mojavensis
Name	β1,4-galactosyltransferase 7	Annotation symbol	GI22222
Feature type	protein_coding_gene	FlyBase ID	FBgn0084187
Gene Model Status	Current	Stock availability	None publicly available
Genomic Location
Chromosome (arm)	scaffold_6540	Recombination map
Cytogenetic map		Sequence location	scaffold_6540:28,884,269..28,885,311 [-]
Genomic Maps	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene β1,4-galactosyltransferase 7 is referred to in FlyBase by the symbol Dmoj\β4GalT7 (GI22222, FBgn0084187). It is a protein_coding_gene from Drosophila mojavensis. An electronic pipeline based on InterPro domains suggests that it has the molecular function: transferase activity, transferring glycosyl groups. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: carbohydrate metabolic process. No alleles are reported. It has one annotated transcript and one annotated polypeptide. Protein features are: Galactosyltransferase, metazoa. Gene sequence location is scaffold_6540:28884269..28885311.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmoj\β4GalT7 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Dmoj\beta4GalT7-RA FBtr0172947  XM_002000967   930   309
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Dmoj\beta4GalT7-PA   FBpp0171439   35.3   309   8.24     XP_002001003   EDW16464
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Galactosyltransferase, metazoa (IPR003859)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AM231258 CAJ77191   CH933806 EDW16464
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q2HPP1 B4K7U3
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
Expression Clusters
External Data & Images
Linkouts
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Dmoj\β4GalT7 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Dmoj\β4GalT7 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
transferase activity, transferring glycosyl groups inferred from electronic annotation with InterPro:IPR003859 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
carbohydrate metabolic process inferred from electronic annotation with InterPro:IPR003859 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	gene   nuclear_gene (Drosophila 12 Genomes Consortium, 2008) protein_coding_gene (Drosophila 12 Genomes Consortium, 2008)
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Dmoj\β4GalT7 allele Gene References
External Data
Linkouts
Orthologs
Genome-wide drosophilid orthologs	Dmel\β4GalT7
Curated drosophilid orthologs
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV17801 LH18127 ISCW003979 FBgn0084525 FBgn0216195 FBgn0211423 FBgn0084229 FBgn0084181 JGI_V11_48345 FBgn0071250 FBgn0161998 FBgn0039258 FBgn0129700 FBgn0084099 FBgn0084773 CPIJ015322 BGIBMGA010795 BGIBMGA010796 ACYPI000541 GB10470 AAEL007895 PB25288 PHUM457130 GLEAN_12167
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 0 )
cDNA Clones ( 0 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • XM_002000967 RefSeq (Proteins) • XP_002001003 DDBJ / EMBL / GenBank • AM231258 CAJ77191 EDW16464 Entrez Gene - A searchable database of RefSeq genes. • 6574976 UniProtKB/TrEMBL • B4K7U3 Q2HPP1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Galactosyltransferase, metazoa (IPR003859)
Linkouts
	FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0084187 modMine - Data generated by the modENCODE project. • FBgn0084187 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV17801 LH18127 ISCW003979 FBgn0084525 FBgn0216195 FBgn0211423 FBgn0084229 FBgn0084181 JGI_V11_48345 FBgn0071250 FBgn0161998 FBgn0039258 FBgn0129700 FBgn0084099 FBgn0084773 CPIJ015322 BGIBMGA010795 BGIBMGA010796 ACYPI000541 GB10470 AAEL007895 PB25288 PHUM457130 GLEAN_12167
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	beta4GalT7 (Drosophila 12 Genomes Consortium, 2008) dmoj_GLEANR_7457 (Drosophila 12 Genomes Consortium, 2008) Dmoj\beta4GalT7 (Drosophila 12 Genomes Consortium, 2008) Dmoj\β4GalT7 (Drosophila 12 Genomes Consortium, 2008) β4Gal-T7 (Oriol, 2006.2.16)
Name Synonym	β1,4-galactosyltransferase 7
Secondary FlyBase IDs
References ( 5 )
Research paper	Drosophila 12 Genomes Consortium et al., 2007, Nature 450(7167): 203--218 Evolution of genes and genomes on the Drosophila phylogeny. [FBrf0200326]
Personal communication to FlyBase	Drosophila 12 Genomes Consortium, 2008, personal communication to FlyBase Symbols and class of gene information for the GLEANR consensus sequences of the 11 sequenced non-melanogaster Drosophila species (Drosophila ananassae, erecta, grimshawi, mojavensis, persimilis, pseudoobscura, sechellia, simulans, willistoni, virilis and yakuba). [FBrf0202436] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
FlyBase analysis	FlyBase, 2008, Newly sequenced Drosophila genomes: associations of GLEANR gene predictions (Releases 1.0) with previously known genes in FlyBase. Newly sequenced Drosophila genomes: associations of GLEANR gene predictions (Releases 1.0) with previously known genes in FlyBase. [FBrf0202439]
DNA/RNA sequence record	Oriol, 2006.2.16, GenBank/EMBL/DDBJ: AM231258 Drosophila mojavensis mRNA for beta1,4-galactosyltransferase 7 (b4Gal-T7 gene). [FBrf0196839]