Gene Dmel\CG34228

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General Information

Symbol

Dmel\CG34228

Species

D. melanogaster

Name

Annotation symbol

CG34228

Feature type

protein_coding_gene

FlyBase ID

FBgn0085257

Gene Model Status

Current

Stock availability

None publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

48B4-48B4

Sequence location

2R:7,539,362..7,539,844 [+]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG34228 (FBgn0085257). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed during early larval stages, during late pupal stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1640230_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG34228. Gene sequence location is 2R:7539362..7539844.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

48B4-48B4

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG34228 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.44

Gene model reviewed during 5.49

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG34228-RA

FBtr0112421

NM_001103804

415

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG34228-PA

FBpp0111336

9.9

9.55

NP_001097274

ABV53767

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q6IGN6

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

day 7 of adulthood -- day 49 of adulthood

adult heart

(Cammarato et al., 2011)

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		183.125
Larval Midgut		166.1
Larval Hindgut		268.1
Larval Malpighian Tubules		326.7
Larval Fat Body		77.1
Larval Salivary Gland		184.1
Larval Trachea		119.375
Larval Carcass		226.5
Adult Head		292
Adult Eye		338.425
Adult Brain		262.7
Adult Thoracic-Abdominal Ganglion		412.3
Adult Crop		400.1
Adult Midgut		163.5
Adult Hindgut		484.8
Adult Malpighian Tubules		257.9
Adult Fat Body		387.2
Adult Salivary Gland		373.2
Adult Heart		312.725
Adult VirginFemale Spermatheca		187.6
Adult InseminatedFemale Spermatheca		195.5
Adult Ovary		125.5
Adult Testis		123.2
Adult Male Accessory Gland		180.2
Adult Carcass		314.3
Expression Level Scale		None Low Moderate High

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		183.125
Larval Midgut		166.1
Larval Hindgut		268.1
Larval Malpighian Tubules		326.7
Larval Fat Body		77.1
Larval Salivary Gland		184.1
Larval Trachea		119.375
Larval Carcass		226.5
Adult Head		292
Adult Eye		338.425
Adult Brain		262.7
Adult Thoracic-Abdominal Ganglion		412.3
Adult Crop		400.1
Adult Midgut		163.5
Adult Hindgut		484.8
Adult Malpighian Tubules		257.9
Adult Fat Body		387.2
Adult Salivary Gland		373.2
Adult Heart		312.725
Adult VirginFemale Spermatheca		187.6
Adult InseminatedFemale Spermatheca		195.5
Adult Ovary		125.5
Adult Testis		123.2
Adult Male Accessory Gland		180.2
Adult Carcass		314.3
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		183.125
Larval Midgut		166.1
Larval Hindgut		268.1
Larval Malpighian Tubules		326.7
Larval Fat Body		77.1
Larval Salivary Gland		184.1
Larval Trachea		119.375
Larval Carcass		226.5
Adult Head		292
Adult Eye		338.425
Adult Brain		262.7
Adult Thoracic-Abdominal Ganglion		412.3
Adult Crop		400.1
Adult Midgut		163.5
Adult Hindgut		484.8
Adult Malpighian Tubules		257.9
Adult Fat Body		387.2
Adult Salivary Gland		373.2
Adult Heart		312.725
Adult VirginFemale Spermatheca		187.6
Adult InseminatedFemale Spermatheca		195.5
Adult Ovary		125.5
Adult Testis		123.2
Adult Male Accessory Gland		180.2
Adult Carcass		314.3
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		183.125
Larval Midgut		166.1
Larval Hindgut		268.1
Larval Malpighian Tubules		326.7
Larval Fat Body		77.1
Larval Salivary Gland		184.1
Larval Trachea		119.375
Larval Carcass		226.5
Adult Head		292
Adult Eye		338.425
Adult Brain		262.7
Adult Thoracic-Abdominal Ganglion		412.3
Adult Crop		400.1
Adult Midgut		163.5
Adult Hindgut		484.8
Adult Malpighian Tubules		257.9
Adult Fat Body		387.2
Adult Salivary Gland		373.2
Adult Heart		312.725
Adult VirginFemale Spermatheca		187.6
Adult InseminatedFemale Spermatheca		195.5
Adult Ovary		125.5
Adult Testis		123.2
Adult Male Accessory Gland		180.2
Adult Carcass		314.3
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		183.125
Larval Midgut		166.1
Larval Hindgut		268.1
Larval Malpighian Tubules		326.7
Larval Fat Body		77.1
Larval Salivary Gland		184.1
Larval Trachea		119.375
Larval Carcass		226.5
Adult Head		292
Adult Eye		338.425
Adult Brain		262.7
Adult Thoracic-Abdominal Ganglion		412.3
Adult Crop		400.1
Adult Midgut		163.5
Adult Hindgut		484.8
Adult Malpighian Tubules		257.9
Adult Fat Body		387.2
Adult Salivary Gland		373.2
Adult Heart		312.725
Adult VirginFemale Spermatheca		187.6
Adult InseminatedFemale Spermatheca		195.5
Adult Ovary		125.5
Adult Testis		123.2
Adult Male Accessory Gland		180.2
Adult Carcass		314.3
Expression Level Scale		None Low Moderate High

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		183.125
Larval Midgut		166.1
Larval Hindgut		268.1
Larval Malpighian Tubules		326.7
Larval Fat Body		77.1
Larval Salivary Gland		184.1
Larval Trachea		119.375
Larval Carcass		226.5
Adult Head		292
Adult Eye		338.425
Adult Brain		262.7
Adult Thoracic-Abdominal Ganglion		412.3
Adult Crop		400.1
Adult Midgut		163.5
Adult Hindgut		484.8
Adult Malpighian Tubules		257.9
Adult Fat Body		387.2
Adult Salivary Gland		373.2
Adult Heart		312.725
Adult VirginFemale Spermatheca		187.6
Adult InseminatedFemale Spermatheca		195.5
Adult Ovary		125.5
Adult Testis		123.2
Adult Male Accessory Gland		180.2
Adult Carcass		314.3
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		183.125
Larval Midgut		166.1
Larval Hindgut		268.1
Larval Malpighian Tubules		326.7
Larval Fat Body		77.1
Larval Salivary Gland		184.1
Larval Trachea		119.375
Larval Carcass		226.5
Adult Head		292
Adult Eye		338.425
Adult Brain		262.7
Adult Thoracic-Abdominal Ganglion		412.3
Adult Crop		400.1
Adult Midgut		163.5
Adult Hindgut		484.8
Adult Malpighian Tubules		257.9
Adult Fat Body		387.2
Adult Salivary Gland		373.2
Adult Heart		312.725
Adult VirginFemale Spermatheca		187.6
Adult InseminatedFemale Spermatheca		195.5
Adult Ovary		125.5
Adult Testis		123.2
Adult Male Accessory Gland		180.2
Adult Carcass		314.3
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		183.125
Larval Midgut		166.1
Larval Hindgut		268.1
Larval Malpighian Tubules		326.7
Larval Fat Body		77.1
Larval Salivary Gland		184.1
Larval Trachea		119.375
Larval Carcass		226.5
Adult Head		292
Adult Eye		338.425
Adult Brain		262.7
Adult Thoracic-Abdominal Ganglion		412.3
Adult Crop		400.1
Adult Midgut		163.5
Adult Hindgut		484.8
Adult Malpighian Tubules		257.9
Adult Fat Body		387.2
Adult Salivary Gland		373.2
Adult Heart		312.725
Adult VirginFemale Spermatheca		187.6
Adult InseminatedFemale Spermatheca		195.5
Adult Ovary		125.5
Adult Testis		123.2
Adult Male Accessory Gland		180.2
Adult Carcass		314.3
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	292
NA	Eye	338.425
NA	Brain	262.7
183.125	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	412.3
NA	Crop	400.1
166.1	Midgut	163.5
268.1	Hindgut	484.8
326.7	Malpighian Tubules	257.9
77.1	Fat Body	387.2
184.1	Salivary Gland	373.2
NA	Heart	312.725
119.375	Trachea	NA
NA	VirginFemale Spermatheca	187.6
NA	InseminatedFemale Spermatheca	195.5
NA	Ovary	125.5
NA	Testis	123.2
NA	Male Accessory Gland	180.2
226.5	Carcass	314.3

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		19
central nervous system, larvae L3		15
central nervous system, pupae P8		22
head, virgin 1-day female		37
head, virgin 4-day female		40
head, virgin 20-day female		24
head, mated 1-day female		47
head, mated 4-day female		36
head, mated 20-day female		24
head, mated 1-day male		41
head, mated 4-day male		61
head, mated 20-day male		63
salivary gland, larvae L3 wandering		13
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		23
digestive system, 1-day adult		35
digestive system, 4-day adult		34
digestive system, 20-day adult		24
fat body, larvae L3 wandering		15
fat body, white prepupae		13
fat body, pupae P8		38
carcass, larvae L3 wandering		19
carcass, 1-day adult		31
carcass, 4-day adult		36
carcass, 20-day adult		30
ovary, virgin 4-day female		31
ovary, mated 4-day female		29
testis, mated 4-day male		16
accessory gland, mated 4-day male		22
Expression Level Scale		Very low Low Moderate Moderately high High

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		19
central nervous system, larvae L3		15
central nervous system, pupae P8		22
head, virgin 1-day female		(37)
head, virgin 4-day female		(40)
head, virgin 20-day female		24
head, mated 1-day female		(47)
head, mated 4-day female		(36)
head, mated 20-day female		24
head, mated 1-day male		(41)
head, mated 4-day male		(61)
head, mated 20-day male		(63)
salivary gland, larvae L3 wandering		13
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		23
digestive system, 1-day adult		(35)
digestive system, 4-day adult		(34)
digestive system, 20-day adult		24
fat body, larvae L3 wandering		15
fat body, white prepupae		13
fat body, pupae P8		(38)
carcass, larvae L3 wandering		19
carcass, 1-day adult		(31)
carcass, 4-day adult		(36)
carcass, 20-day adult		(30)
ovary, virgin 4-day female		(31)
ovary, mated 4-day female		(29)
testis, mated 4-day male		16
accessory gland, mated 4-day male		22
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		19
central nervous system, larvae L3		15
central nervous system, pupae P8		22
head, virgin 1-day female		37
head, virgin 4-day female		40
head, virgin 20-day female		24
head, mated 1-day female		47
head, mated 4-day female		36
head, mated 20-day female		24
head, mated 1-day male		41
head, mated 4-day male		61
head, mated 20-day male		63
salivary gland, larvae L3 wandering		13
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		23
digestive system, 1-day adult		35
digestive system, 4-day adult		34
digestive system, 20-day adult		24
fat body, larvae L3 wandering		15
fat body, white prepupae		13
fat body, pupae P8		38
carcass, larvae L3 wandering		19
carcass, 1-day adult		31
carcass, 4-day adult		36
carcass, 20-day adult		30
ovary, virgin 4-day female		31
ovary, mated 4-day female		29
testis, mated 4-day male		16
accessory gland, mated 4-day male		22
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		19
central nervous system, larvae L3		15
central nervous system, pupae P8		22
head, virgin 1-day female		37
head, virgin 4-day female		40
head, virgin 20-day female		24
head, mated 1-day female		47
head, mated 4-day female		36
head, mated 20-day female		24
head, mated 1-day male		41
head, mated 4-day male		61
head, mated 20-day male		63
salivary gland, larvae L3 wandering		13
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		23
digestive system, 1-day adult		35
digestive system, 4-day adult		34
digestive system, 20-day adult		24
fat body, larvae L3 wandering		15
fat body, white prepupae		13
fat body, pupae P8		38
carcass, larvae L3 wandering		19
carcass, 1-day adult		31
carcass, 4-day adult		36
carcass, 20-day adult		30
ovary, virgin 4-day female		31
ovary, mated 4-day female		29
testis, mated 4-day male		16
accessory gland, mated 4-day male		22
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		19
central nervous system, larvae L3		15
central nervous system, pupae P8		22
head, virgin 1-day female		37
head, virgin 4-day female		40
head, virgin 20-day female		24
head, mated 1-day female		47
head, mated 4-day female		36
head, mated 20-day female		24
head, mated 1-day male		41
head, mated 4-day male		61
head, mated 20-day male		63
salivary gland, larvae L3 wandering		13
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		23
digestive system, 1-day adult		35
digestive system, 4-day adult		34
digestive system, 20-day adult		24
fat body, larvae L3 wandering		15
fat body, white prepupae		13
fat body, pupae P8		38
carcass, larvae L3 wandering		19
carcass, 1-day adult		31
carcass, 4-day adult		36
carcass, 20-day adult		30
ovary, virgin 4-day female		31
ovary, mated 4-day female		29
testis, mated 4-day male		16
accessory gland, mated 4-day male		22
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		19
central nervous system, larvae L3		15
central nervous system, pupae P8		22
head, virgin 1-day female		(37)
head, virgin 4-day female		(40)
head, virgin 20-day female		24
head, mated 1-day female		(47)
head, mated 4-day female		(36)
head, mated 20-day female		24
head, mated 1-day male		(41)
head, mated 4-day male		(61)
head, mated 20-day male		(63)
salivary gland, larvae L3 wandering		13
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		23
digestive system, 1-day adult		(35)
digestive system, 4-day adult		(34)
digestive system, 20-day adult		24
fat body, larvae L3 wandering		15
fat body, white prepupae		13
fat body, pupae P8		(38)
carcass, larvae L3 wandering		19
carcass, 1-day adult		31
carcass, 4-day adult		(36)
carcass, 20-day adult		30
ovary, virgin 4-day female		31
ovary, mated 4-day female		29
testis, mated 4-day male		16
accessory gland, mated 4-day male		22
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		19
central nervous system, larvae L3		15
central nervous system, pupae P8		22
head, virgin 1-day female		37
head, virgin 4-day female		40
head, virgin 20-day female		24
head, mated 1-day female		47
head, mated 4-day female		36
head, mated 20-day female		24
head, mated 1-day male		41
head, mated 4-day male		61
head, mated 20-day male		63
salivary gland, larvae L3 wandering		13
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		23
digestive system, 1-day adult		35
digestive system, 4-day adult		34
digestive system, 20-day adult		24
fat body, larvae L3 wandering		15
fat body, white prepupae		13
fat body, pupae P8		38
carcass, larvae L3 wandering		19
carcass, 1-day adult		31
carcass, 4-day adult		36
carcass, 20-day adult		30
ovary, virgin 4-day female		31
ovary, mated 4-day female		29
testis, mated 4-day male		16
accessory gland, mated 4-day male		22
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		19
central nervous system, larvae L3		15
central nervous system, pupae P8		22
head, virgin 1-day female		37
head, virgin 4-day female		40
head, virgin 20-day female		24
head, mated 1-day female		47
head, mated 4-day female		36
head, mated 20-day female		24
head, mated 1-day male		41
head, mated 4-day male		61
head, mated 20-day male		63
salivary gland, larvae L3 wandering		13
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		23
digestive system, 1-day adult		35
digestive system, 4-day adult		34
digestive system, 20-day adult		24
fat body, larvae L3 wandering		15
fat body, white prepupae		13
fat body, pupae P8		38
carcass, larvae L3 wandering		19
carcass, 1-day adult		31
carcass, 4-day adult		36
carcass, 20-day adult		30
ovary, virgin 4-day female		31
ovary, mated 4-day female		29
testis, mated 4-day male		16
accessory gland, mated 4-day male		22
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed during early larval stages, during late pupal stages.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		7
embryo 08-10hr		7
embryo 10-12hr		10
embryo 12-14hr		15
embryo 14-16hr		7
embryo 16-18hr		15
embryo 18-20hr		15
embryo 20-22hr		11
embryo 22-24hr		17
larva L1		16
larva L2		26
larva L3 12hr old		18
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		13
white prepupae 12hr		10
white prepupae 24hr		8
pupae 2d postWPP		18
pupae 3d postWPP		18
pupae 4d postWPP		6
adult male 01day		16
adult male 05day		14
adult male 30day		10
adult female 01day		8
adult female 05day		15
adult female 30day		12
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		7
embryo 08-10hr		7
embryo 10-12hr		10
embryo 12-14hr		15
embryo 14-16hr		7
embryo 16-18hr		15
embryo 18-20hr		15
embryo 20-22hr		11
embryo 22-24hr		17
larva L1		16
larva L2		26
larva L3 12hr old		18
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		13
white prepupae 12hr		10
white prepupae 24hr		8
pupae 2d postWPP		18
pupae 3d postWPP		18
pupae 4d postWPP		6
adult male 01day		16
adult male 05day		14
adult male 30day		10
adult female 01day		8
adult female 05day		15
adult female 30day		12
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		7
embryo 08-10hr		7
embryo 10-12hr		10
embryo 12-14hr		15
embryo 14-16hr		7
embryo 16-18hr		15
embryo 18-20hr		15
embryo 20-22hr		11
embryo 22-24hr		17
larva L1		16
larva L2		26
larva L3 12hr old		18
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		13
white prepupae 12hr		10
white prepupae 24hr		8
pupae 2d postWPP		18
pupae 3d postWPP		18
pupae 4d postWPP		6
adult male 01day		16
adult male 05day		14
adult male 30day		10
adult female 01day		8
adult female 05day		15
adult female 30day		12
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		7
embryo 08-10hr		7
embryo 10-12hr		10
embryo 12-14hr		15
embryo 14-16hr		7
embryo 16-18hr		15
embryo 18-20hr		15
embryo 20-22hr		11
embryo 22-24hr		17
larva L1		16
larva L2		26
larva L3 12hr old		18
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		13
white prepupae 12hr		10
white prepupae 24hr		8
pupae 2d postWPP		18
pupae 3d postWPP		18
pupae 4d postWPP		6
adult male 01day		16
adult male 05day		14
adult male 30day		10
adult female 01day		8
adult female 05day		15
adult female 30day		12
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		7
embryo 08-10hr		7
embryo 10-12hr		10
embryo 12-14hr		15
embryo 14-16hr		7
embryo 16-18hr		15
embryo 18-20hr		15
embryo 20-22hr		11
embryo 22-24hr		17
larva L1		16
larva L2		26
larva L3 12hr old		18
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		13
white prepupae 12hr		10
white prepupae 24hr		8
pupae 2d postWPP		18
pupae 3d postWPP		18
pupae 4d postWPP		6
adult male 01day		16
adult male 05day		14
adult male 30day		10
adult female 01day		8
adult female 05day		15
adult female 30day		12
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		7
embryo 08-10hr		7
embryo 10-12hr		10
embryo 12-14hr		15
embryo 14-16hr		7
embryo 16-18hr		15
embryo 18-20hr		15
embryo 20-22hr		11
embryo 22-24hr		17
larva L1		16
larva L2		26
larva L3 12hr old		18
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		13
white prepupae 12hr		10
white prepupae 24hr		8
pupae 2d postWPP		18
pupae 3d postWPP		18
pupae 4d postWPP		6
adult male 01day		16
adult male 05day		14
adult male 30day		10
adult female 01day		8
adult female 05day		15
adult female 30day		12
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		7
embryo 08-10hr		7
embryo 10-12hr		10
embryo 12-14hr		15
embryo 14-16hr		7
embryo 16-18hr		15
embryo 18-20hr		15
embryo 20-22hr		11
embryo 22-24hr		17
larva L1		16
larva L2		26
larva L3 12hr old		18
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		13
white prepupae 12hr		10
white prepupae 24hr		8
pupae 2d postWPP		18
pupae 3d postWPP		18
pupae 4d postWPP		6
adult male 01day		16
adult male 05day		14
adult male 30day		10
adult female 01day		8
adult female 05day		15
adult female 30day		12
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		9
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		7
embryo 08-10hr		7
embryo 10-12hr		10
embryo 12-14hr		15
embryo 14-16hr		7
embryo 16-18hr		15
embryo 18-20hr		15
embryo 20-22hr		11
embryo 22-24hr		17
larva L1		16
larva L2		26
larva L3 12hr old		18
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		13
white prepupae 12hr		10
white prepupae 24hr		8
pupae 2d postWPP		18
pupae 3d postWPP		18
pupae 4d postWPP		6
adult male 01day		16
adult male 05day		14
adult male 30day		10
adult female 01day		8
adult female 05day		15
adult female 30day		12
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		73
Schneider line 2 Sg4		25
embryonic 1182-4H		34
embryonic GM2		38
embryonic Kc167		129
embryonic S1		19
embryonic S3		33
leg disc CME L1		17
wing disc CME-W2		111
wing disc ML-DmD8		35
wing disc ML-DmD9		28
wing disc ML-DmD16-c3		38
wing disc ML-DmD21		39
wing disc ML-DmD32		38
haltere disc ML-DmD17-c3		39
eye-antennal disc ML-DmD11		32
antennal disc ML-DmD20-c5		47
mixed discs ML-DmD4-c1		43
CNS ML-DmBG1-c1		64
CNS ML-DmBG2-c2		256
tumorous blood cells mbn2		27
ovary fGS/OSS		17
ovary OSC		62
ovary OSS		12
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(73)
Schneider line 2 Sg4		25
embryonic 1182-4H		(34)
embryonic GM2		(38)
embryonic Kc167		(129)
embryonic S1		19
embryonic S3		(33)
leg disc CME L1		17
wing disc CME-W2		(111)
wing disc ML-DmD8		(35)
wing disc ML-DmD9		(28)
wing disc ML-DmD16-c3		(38)
wing disc ML-DmD21		(39)
wing disc ML-DmD32		(38)
haltere disc ML-DmD17-c3		(39)
eye-antennal disc ML-DmD11		(32)
antennal disc ML-DmD20-c5		(47)
mixed discs ML-DmD4-c1		(43)
CNS ML-DmBG1-c1		(64)
CNS ML-DmBG2-c2		(256)
tumorous blood cells mbn2		(27)
ovary fGS/OSS		17
ovary OSC		(62)
ovary OSS		12
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		73
Schneider line 2 Sg4		25
embryonic 1182-4H		34
embryonic GM2		38
embryonic Kc167		(129)
embryonic S1		19
embryonic S3		33
leg disc CME L1		17
wing disc CME-W2		(111)
wing disc ML-DmD8		35
wing disc ML-DmD9		28
wing disc ML-DmD16-c3		38
wing disc ML-DmD21		39
wing disc ML-DmD32		38
haltere disc ML-DmD17-c3		39
eye-antennal disc ML-DmD11		32
antennal disc ML-DmD20-c5		47
mixed discs ML-DmD4-c1		43
CNS ML-DmBG1-c1		64
CNS ML-DmBG2-c2		(256)
tumorous blood cells mbn2		27
ovary fGS/OSS		17
ovary OSC		62
ovary OSS		12
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		73
Schneider line 2 Sg4		25
embryonic 1182-4H		34
embryonic GM2		38
embryonic Kc167		129
embryonic S1		19
embryonic S3		33
leg disc CME L1		17
wing disc CME-W2		111
wing disc ML-DmD8		35
wing disc ML-DmD9		28
wing disc ML-DmD16-c3		38
wing disc ML-DmD21		39
wing disc ML-DmD32		38
haltere disc ML-DmD17-c3		39
eye-antennal disc ML-DmD11		32
antennal disc ML-DmD20-c5		47
mixed discs ML-DmD4-c1		43
CNS ML-DmBG1-c1		64
CNS ML-DmBG2-c2		256
tumorous blood cells mbn2		27
ovary fGS/OSS		17
ovary OSC		62
ovary OSS		12
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		73
Schneider line 2 Sg4		25
embryonic 1182-4H		34
embryonic GM2		38
embryonic Kc167		129
embryonic S1		19
embryonic S3		33
leg disc CME L1		17
wing disc CME-W2		111
wing disc ML-DmD8		35
wing disc ML-DmD9		28
wing disc ML-DmD16-c3		38
wing disc ML-DmD21		39
wing disc ML-DmD32		38
haltere disc ML-DmD17-c3		39
eye-antennal disc ML-DmD11		32
antennal disc ML-DmD20-c5		47
mixed discs ML-DmD4-c1		43
CNS ML-DmBG1-c1		64
CNS ML-DmBG2-c2		256
tumorous blood cells mbn2		27
ovary fGS/OSS		17
ovary OSC		62
ovary OSS		12
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(73)
Schneider line 2 Sg4		25
embryonic 1182-4H		(34)
embryonic GM2		(38)
embryonic Kc167		(129)
embryonic S1		19
embryonic S3		(33)
leg disc CME L1		17
wing disc CME-W2		(111)
wing disc ML-DmD8		(35)
wing disc ML-DmD9		28
wing disc ML-DmD16-c3		(38)
wing disc ML-DmD21		(39)
wing disc ML-DmD32		(38)
haltere disc ML-DmD17-c3		(39)
eye-antennal disc ML-DmD11		32
antennal disc ML-DmD20-c5		(47)
mixed discs ML-DmD4-c1		(43)
CNS ML-DmBG1-c1		(64)
CNS ML-DmBG2-c2		(256)
tumorous blood cells mbn2		27
ovary fGS/OSS		17
ovary OSC		(62)
ovary OSS		12
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		73
Schneider line 2 Sg4		25
embryonic 1182-4H		34
embryonic GM2		38
embryonic Kc167		129
embryonic S1		19
embryonic S3		33
leg disc CME L1		17
wing disc CME-W2		111
wing disc ML-DmD8		35
wing disc ML-DmD9		28
wing disc ML-DmD16-c3		38
wing disc ML-DmD21		39
wing disc ML-DmD32		38
haltere disc ML-DmD17-c3		39
eye-antennal disc ML-DmD11		32
antennal disc ML-DmD20-c5		47
mixed discs ML-DmD4-c1		43
CNS ML-DmBG1-c1		64
CNS ML-DmBG2-c2		(256)
tumorous blood cells mbn2		27
ovary fGS/OSS		17
ovary OSC		62
ovary OSS		12
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		73
Schneider line 2 Sg4		25
embryonic 1182-4H		34
embryonic GM2		38
embryonic Kc167		129
embryonic S1		19
embryonic S3		33
leg disc CME L1		17
wing disc CME-W2		111
wing disc ML-DmD8		35
wing disc ML-DmD9		28
wing disc ML-DmD16-c3		38
wing disc ML-DmD21		39
wing disc ML-DmD32		38
haltere disc ML-DmD17-c3		39
eye-antennal disc ML-DmD11		32
antennal disc ML-DmD20-c5		47
mixed discs ML-DmD4-c1		43
CNS ML-DmBG1-c1		64
CNS ML-DmBG2-c2		256
tumorous blood cells mbn2		27
ovary fGS/OSS		17
ovary OSC		62
ovary OSS		12
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		10
cold shock, 4-day adult		6
heat shock, 4-day adult		31
Cadmium 50 mM 6 hrs, larvae L3		56
Cadmium 50 mM 12 hrs, larvae L3		49
Cadmium 50 mM 48 hrs, 4-day adult		47
Cadmium 100 mM 48 hrs, 4-day adult		49
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		21
Zinc 5 mM 12 hrs, larvae L3		18
Zinc 4.5 mM 48 hrs, 4-day adult		28
Ethanol 2.5% 3 hrs, larvae L3		25
Ethanol 5% 3 hrs, larvae L3		51
Ethanol 10% 3 hrs, larvae L3		34
Caffeine 1.5 mg/ml 4 hrs, larvae L3		44
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		45
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		48
Paraquat 10 mM 48 hrs, 4-day adult		68
Rotenone 2 μg 12 hrs, larvae L3		53
Rotenone 8 μg 12 hrs, larvae L3		19
Expression Level Scale		Very low Low Moderate Moderately high High

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		10
cold shock, 4-day adult		6
heat shock, 4-day adult		(31)
Cadmium 50 mM 6 hrs, larvae L3		(56)
Cadmium 50 mM 12 hrs, larvae L3		(49)
Cadmium 50 mM 48 hrs, 4-day adult		(47)
Cadmium 100 mM 48 hrs, 4-day adult		(49)
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		21
Zinc 5 mM 12 hrs, larvae L3		18
Zinc 4.5 mM 48 hrs, 4-day adult		(28)
Ethanol 2.5% 3 hrs, larvae L3		25
Ethanol 5% 3 hrs, larvae L3		(51)
Ethanol 10% 3 hrs, larvae L3		(34)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(44)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		(45)
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		(48)
Paraquat 10 mM 48 hrs, 4-day adult		(68)
Rotenone 2 μg 12 hrs, larvae L3		(53)
Rotenone 8 μg 12 hrs, larvae L3		19
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		10
cold shock, 4-day adult		6
heat shock, 4-day adult		31
Cadmium 50 mM 6 hrs, larvae L3		56
Cadmium 50 mM 12 hrs, larvae L3		49
Cadmium 50 mM 48 hrs, 4-day adult		47
Cadmium 100 mM 48 hrs, 4-day adult		49
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		21
Zinc 5 mM 12 hrs, larvae L3		18
Zinc 4.5 mM 48 hrs, 4-day adult		28
Ethanol 2.5% 3 hrs, larvae L3		25
Ethanol 5% 3 hrs, larvae L3		51
Ethanol 10% 3 hrs, larvae L3		34
Caffeine 1.5 mg/ml 4 hrs, larvae L3		44
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		45
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		48
Paraquat 10 mM 48 hrs, 4-day adult		68
Rotenone 2 μg 12 hrs, larvae L3		53
Rotenone 8 μg 12 hrs, larvae L3		19
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		10
cold shock, 4-day adult		6
heat shock, 4-day adult		31
Cadmium 50 mM 6 hrs, larvae L3		56
Cadmium 50 mM 12 hrs, larvae L3		49
Cadmium 50 mM 48 hrs, 4-day adult		47
Cadmium 100 mM 48 hrs, 4-day adult		49
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		21
Zinc 5 mM 12 hrs, larvae L3		18
Zinc 4.5 mM 48 hrs, 4-day adult		28
Ethanol 2.5% 3 hrs, larvae L3		25
Ethanol 5% 3 hrs, larvae L3		51
Ethanol 10% 3 hrs, larvae L3		34
Caffeine 1.5 mg/ml 4 hrs, larvae L3		44
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		45
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		48
Paraquat 10 mM 48 hrs, 4-day adult		68
Rotenone 2 μg 12 hrs, larvae L3		53
Rotenone 8 μg 12 hrs, larvae L3		19
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		10
cold shock, 4-day adult		6
heat shock, 4-day adult		31
Cadmium 50 mM 6 hrs, larvae L3		56
Cadmium 50 mM 12 hrs, larvae L3		49
Cadmium 50 mM 48 hrs, 4-day adult		47
Cadmium 100 mM 48 hrs, 4-day adult		49
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		21
Zinc 5 mM 12 hrs, larvae L3		18
Zinc 4.5 mM 48 hrs, 4-day adult		28
Ethanol 2.5% 3 hrs, larvae L3		25
Ethanol 5% 3 hrs, larvae L3		51
Ethanol 10% 3 hrs, larvae L3		34
Caffeine 1.5 mg/ml 4 hrs, larvae L3		44
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		45
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		48
Paraquat 10 mM 48 hrs, 4-day adult		68
Rotenone 2 μg 12 hrs, larvae L3		53
Rotenone 8 μg 12 hrs, larvae L3		19
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		10
cold shock, 4-day adult		6
heat shock, 4-day adult		31
Cadmium 50 mM 6 hrs, larvae L3		(56)
Cadmium 50 mM 12 hrs, larvae L3		(49)
Cadmium 50 mM 48 hrs, 4-day adult		(47)
Cadmium 100 mM 48 hrs, 4-day adult		(49)
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		21
Zinc 5 mM 12 hrs, larvae L3		18
Zinc 4.5 mM 48 hrs, 4-day adult		28
Ethanol 2.5% 3 hrs, larvae L3		25
Ethanol 5% 3 hrs, larvae L3		(51)
Ethanol 10% 3 hrs, larvae L3		(34)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(44)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		(45)
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		(48)
Paraquat 10 mM 48 hrs, 4-day adult		(68)
Rotenone 2 μg 12 hrs, larvae L3		(53)
Rotenone 8 μg 12 hrs, larvae L3		19
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		10
cold shock, 4-day adult		6
heat shock, 4-day adult		31
Cadmium 50 mM 6 hrs, larvae L3		56
Cadmium 50 mM 12 hrs, larvae L3		49
Cadmium 50 mM 48 hrs, 4-day adult		47
Cadmium 100 mM 48 hrs, 4-day adult		49
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		21
Zinc 5 mM 12 hrs, larvae L3		18
Zinc 4.5 mM 48 hrs, 4-day adult		28
Ethanol 2.5% 3 hrs, larvae L3		25
Ethanol 5% 3 hrs, larvae L3		51
Ethanol 10% 3 hrs, larvae L3		34
Caffeine 1.5 mg/ml 4 hrs, larvae L3		44
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		45
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		48
Paraquat 10 mM 48 hrs, 4-day adult		68
Rotenone 2 μg 12 hrs, larvae L3		53
Rotenone 8 μg 12 hrs, larvae L3		19
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		10
cold shock, 4-day adult		6
heat shock, 4-day adult		31
Cadmium 50 mM 6 hrs, larvae L3		56
Cadmium 50 mM 12 hrs, larvae L3		49
Cadmium 50 mM 48 hrs, 4-day adult		47
Cadmium 100 mM 48 hrs, 4-day adult		49
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		21
Zinc 5 mM 12 hrs, larvae L3		18
Zinc 4.5 mM 48 hrs, 4-day adult		28
Ethanol 2.5% 3 hrs, larvae L3		25
Ethanol 5% 3 hrs, larvae L3		51
Ethanol 10% 3 hrs, larvae L3		34
Caffeine 1.5 mg/ml 4 hrs, larvae L3		44
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		45
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		48
Paraquat 10 mM 48 hrs, 4-day adult		68
Rotenone 2 μg 12 hrs, larvae L3		53
Rotenone 8 μg 12 hrs, larvae L3		19
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010, Graveley et al., 2011)

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0085257

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

HDC05827

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of CG34228	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 0 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG34228	Class	Mutagen	Stocks	Known lesion

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

protein_coding_gene

(FlyBase Genome Annotators, 2007)

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG34228 allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0085257

Orthologs

OrthoDB Orthologs (34) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG6MKP31

Dipteran inclusive ortholog search

EOG6V6ZS8

Insect inclusive ortholog search

EOG6H18SS

Arthropod inclusive ortholog search

EOG60P2R4

Metazoa inclusive ortholog search

EOG6M6JF0

Orthologs in Drosophila Species (EOG6MKP31)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA24719

Drosophila persimilis

Dper\GL11417

Drosophila willistoni

Dwil\GK22110

Drosophila virilis

Dvir\GJ20364

Drosophila mojavensis

Dmoj\GI18570

Drosophila grimshawi

Dgri\GH21391

Orthologs in non-Drosophila Dipterans (EOG6V6ZS8)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL014024

Anopheles gambiae

Malaria mosquito

Agam\AGAP006409

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ008435

Orthologs in non-Dipteran Insects (EOG6H18SS)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Apis mellifera

Western honey bee

Amel\GB40311

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG016340

Acromyrmex echinatior

Panamanian leafcutter ant

Aech\AECH15939

Atta cephalotes

Leafcutter ant

Acep\ACEP14633

Camponotus floridanus

Florida carpenter ant

Cflo\CFLO11832

Harpegnathos saltator

Jerdons jumping ant

Hsal\HSAL15394

Linepithema humile

Argentine ant

Lhum\LH20199

Pogonomyrmex barbatus

Red harvester ant

Pbar\PB16382

Bombyx mori

Silkmoth

Bmor\BGIBMGA011196

Pediculus humanus

Human body louse

Phum\PHUM366130

Orthologs in non-Insect Arthropods (EOG60P2R4)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Daphnia pulex

Water flea

Dpux\JGI_V11_304831

Ixodes scapularis

Deer tick

Isca\ISCW019425

Orthologs in non-Arthropod Metazoa (EOG6M6JF0)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_012204gn

Danio rerio

Zebrafish

Drer\ENSDARG00000070358

Xenopus tropicalis

Western clawed frog

Xtro\ENSXETG00000016486

Gallus gallus

Domestic chicken

Ggal\C1orf212

Mus musculus

House mouse

Mmus\ENSMUSG00000042380

Rattus norvegicus

Norway rat

Rnor\ENSRNOG00000014352

Homo sapiens

Human

Hsap\C1orf212

Human Orthologs (1)

Gene

OMIM

HGNC

Hsap\C1orf212

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 0 )

Genomic Clones ( 2 )

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 5 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

IP17888

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0085257

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

5740377

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Other Comments

New annotation (CG34228) in release 5.2 of the genome annotation.

(FlyBase Genome Annotators, 2007)

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_001103804

RefSeq (Proteins)

•

NP_001097274

DDBJ / EMBL / GenBank

•

ABV53767

Entrez Gene - A searchable database of RefSeq genes.

•

5740377

UniProtKB/TrEMBL

•

Q6IGN6

Other Crossreferences

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0085257

DRSC - Results from RNAi screens.

•

FBgn0085257

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0085257

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

HDC05827

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0085257

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

5740377

modMine - Data generated by the modENCODE project.

•

FBgn0085257

Synonyms & Secondary IDs ( 1 )

Reported As

Symbol Synonym

CG34228

(FlyBase Genome Annotators, 2007, Cammarato et al., 2011)

Name Synonym

Secondary FlyBase IDs

References ( 4 )

Supplementary material

Cammarato et al., 2011, PLoS ONE 6(4):: Table S1. Proteins & Peptides. [FBrf0214682]
Graveley et al., 2011, Nature 471(7339):: Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980]
The modENCODE Consortium, 2010, Science 330(6012):: DataS14: Gene co-expression clusters. [FBrf0213979]

FlyBase analysis

FlyBase Genome Annotators, 2007, Changes affecting gene model number or type in release 5.2 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in release 5.2 of the annotated D.melanogaster genome. [FBrf0199252]