A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\pan

General Information
SymbolDmel\panSpeciesD. melanogaster
NamepangolinAnnotation symbolCG34403
Feature typeprotein_coding_geneFlyBase IDFBgn0085432
Gene Model StatusCurrent Stock availability 89 publicly available
Also Known AsdTcf, TCF, l(4)13, CG17964, LEF-1, Lef, Tcf/LEF, LEF/TCF, lef1, CG32005
Genomic Location
Chromosome (arm)4Recombination map
Cytogenetic map102A3-102A4Sequence location4:89,956..134,454 [+]

Genomic Maps

GBrowse View Help
modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene pangolin is referred to in FlyBase by the symbol Dmel\pan (CG34403, FBgn0085432). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: kinase binding; sequence-specific DNA binding; RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription; sequence-specific distal enhancer binding RNA polymerase II transcription factor activity; repressing transcription factor binding. There is experimental evidence that it is involved in the biological process: positive regulation of gene expression; regulation of Wnt receptor signaling pathway; regulation of stem cell proliferation; positive regulation of transcription from RNA polymerase II promoter; spiracle morphogenesis, open tracheal system; embryonic pattern specification; regulation of hemocyte differentiation; positive regulation of transcription, DNA-dependent; imaginal disc-derived wing morphogenesis; salivary gland morphogenesis. 44 alleles are reported. The phenotypes of these alleles are annotated with: organ system; organ system subdivision; adult segment; non-connected developing system; thoracic segment; late extended germ band embryo; portion of tissue; external compound sense organ; imaginal precursor; acellular anatomical structure. It has 12 annotated transcripts and 12 annotated polypeptides. Protein features are: CTNNB1 binding, N-teminal; High mobility group, HMG1/HMG2; High mobility group, superfamily. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: adult brain. Gene sequence location is 4:89956..134454.

External Summaries
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
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FB2011_10
FB2012_01
References
Sequence features
Controlled Vocabulary Terms
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
102A3-102A4  
Limits computationally determined from genome sequence between P{SUPor-P}KG01127&PBac{5HPw+}A173 and PBac{5HPw+}A437  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
 
Located at the base of chromosome 4 by in situ hybridisation.  
101F-101F  
(determined by in situ hybridisation)  
 
Located at the border of segments 101 and 102.  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\pan for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0089157 FBtr0089156 FBtr0089158 FBtr0089159 FBtr0308615 FBtr0100246 FBtr0100245 FBtr0089160 FBtr0309803 FBtr0089161 FBtr0089162 FBtr0112657 FBpp0301556 FBpp0088224 FBpp0088223 FBpp0088227 FBpp0099631 FBpp0300839 FBpp0088226 FBpp0088228 FBpp0088229 FBpp0088225 FBpp0099632 FBpp0111569 FBti0029037 FBti0100344 FBti0116159_2 FBti0024161 FBti0116159_1 FBti0045728 FBti0049267 FBti0050469 FBti0050635
Comments on Gene Model
Gene model reviewed during 5.41
Gene model reviewed during 5.39
Gene merge based on EST/cDNA data
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0089161
  4121
  751
FBtr0089159
  2870
  751
FBtr0089160
  4529
  751
FBtr0089162
  4094
  751
FBtr0089156
  4123
  751
FBtr0089158
  3997
  751
FBtr0089157
  4055
  751
FBtr0100245
  3942
  747
FBtr0100246
  3518
  410
FBtr0112657
  5146
  1192
FBtr0308615
 
  4677
  494
FBtr0309803
 
  7890
  751
Additional Transcript Data & Comments
Reported size (kB)
2.8 (compiled cDNA)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
pan-PA  
FBpp0088228  
81.9  
751  
7.20  
pan-PB  
FBpp0088226  
81.9  
751  
7.20  
pan-PC  
FBpp0088227  
81.9  
751  
7.20  
pan-PD  
FBpp0088229  
81.9  
751  
7.20  
pan-PE  
FBpp0088223  
81.9  
751  
7.20  
pan-PF  
FBpp0088225  
81.9  
751  
7.20  
pan-PG  
FBpp0088224  
81.9  
751  
7.20  
pan-PH  
FBpp0099631  
81.4  
747  
7.29  
pan-PI  
FBpp0099632  
46.3  
410  
9.21  
pan-PJ  
FBpp0111569  
132.1  
1192  
7.13  
pan-PQ  
FBpp0300839  
53.5  
494  
9.00  
 
 
pan-PR  
FBpp0301556  
81.9  
751  
7.20  
 
 
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
A fusion construct containing amino acids 1 to 130 of wild-type pan protein (panwt.cBa) binds 4-5 fold more of the vertebrate arm protein homolog beta-catenin in-vitro than fusion constructs containing amino acids 1 to 130 of either panS25 or panS28 protein. The panS25 and panS28 proteins each differ from wild type pan protein by one amino acid.
Repeats 3-8 of the arm protein interact with aa 1-90 of pan in a yeast two-hybrid assay. The DNA binding site of the pan HMG box was assayed, and revealed the consensus CCTTTGATCTT. Cotransfection of arm and pan vectors resulted in transcriptional activation of a Cat or a Ppyr\LUC reporter, and the C-terminus of arm protein was necessary for this activation. The transactivation capacity of the C-terminus of arm was further demonstrated by fusing it to a GAL4-DNA binding domain, and assaying expression of a CAT reporter.
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
pcr
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:reference states 0-2 hr AEL
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view pan-RG pan-RE pan-RF pan-RB pan-RQ pan-RI pan-RH pan-RC pan-RR pan-RA pan-RD pan-RJ
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0085432


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0085432
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0085432 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 76
embryo 02-04hr
 
 235
embryo 04-06hr
 
 525
embryo 06-08hr
 
 386
embryo 08-10hr
 
 461
embryo 10-12hr
 
 311
embryo 12-14hr
 
 610
embryo 14-16hr
 
 231
embryo 16-18hr
 
 320
embryo 18-20hr
 
 280
embryo 20-22hr
 
 254
embryo 22-24hr
 
 422
larva L1
 
 227
larva L2
 
 169
larva L3 12hr old
 
 167
larva L3 puffstage 1-2
 
 85
larva L3 puffstage 3-6
 
 261
larva L3 puffstage 7-9
 
 423
white prepupae new
 
 504
white prepupae 12hr
 
 501
white prepupae 24hr
 
 596
pupae 2d postWPP
 
 591
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 282
adult male 01day
 
 336
adult male 05day
 
 259
adult male 30day
 
 196
adult female 01day
 
 175
adult female 05day
 
 154
adult female 30day
 
 141
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 76
embryo 02-04hr
 (235)
embryo 04-06hr
 (525)
embryo 06-08hr
 (386)
embryo 08-10hr
 (461)
embryo 10-12hr
 (311)
embryo 12-14hr
 (610)
embryo 14-16hr
 (231)
embryo 16-18hr
 (320)
embryo 18-20hr
 (280)
embryo 20-22hr
 (254)
embryo 22-24hr
 (422)
larva L1
 (227)
larva L2
 (169)
larva L3 12hr old
 (167)
larva L3 puffstage 1-2
 
 85
larva L3 puffstage 3-6
 (261)
larva L3 puffstage 7-9
 (423)
white prepupae new
 (504)
white prepupae 12hr
 (501)
white prepupae 24hr
 (596)
pupae 2d postWPP
 (591)
pupae 3d postWPP
 (502)
pupae 4d postWPP
 (282)
adult male 01day
 (336)
adult male 05day
 (259)
adult male 30day
 (196)
adult female 01day
 (175)
adult female 05day
 (154)
adult female 30day
 (141)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 76
embryo 02-04hr
 
 235
embryo 04-06hr
 
 525
embryo 06-08hr
 
 386
embryo 08-10hr
 
 461
embryo 10-12hr
 
 311
embryo 12-14hr
 
 610
embryo 14-16hr
 
 231
embryo 16-18hr
 
 320
embryo 18-20hr
 
 280
embryo 20-22hr
 
 254
embryo 22-24hr
 
 422
larva L1
 
 227
larva L2
 
 169
larva L3 12hr old
 
 167
larva L3 puffstage 1-2
 
 85
larva L3 puffstage 3-6
 
 261
larva L3 puffstage 7-9
 
 423
white prepupae new
 
 504
white prepupae 12hr
 
 501
white prepupae 24hr
 
 596
pupae 2d postWPP
 
 591
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 282
adult male 01day
 
 336
adult male 05day
 
 259
adult male 30day
 
 196
adult female 01day
 
 175
adult female 05day
 
 154
adult female 30day
 
 141
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 76
embryo 02-04hr
 
 235
embryo 04-06hr
 
 525
embryo 06-08hr
 
 386
embryo 08-10hr
 
 461
embryo 10-12hr
 
 311
embryo 12-14hr
 
 610
embryo 14-16hr
 
 231
embryo 16-18hr
 
 320
embryo 18-20hr
 
 280
embryo 20-22hr
 
 254
embryo 22-24hr
 
 422
larva L1
 
 227
larva L2
 
 169
larva L3 12hr old
 
 167
larva L3 puffstage 1-2
 
 85
larva L3 puffstage 3-6
 
 261
larva L3 puffstage 7-9
 
 423
white prepupae new
 
 504
white prepupae 12hr
 
 501
white prepupae 24hr
 
 596
pupae 2d postWPP
 
 591
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 282
adult male 01day
 
 336
adult male 05day
 
 259
adult male 30day
 
 196
adult female 01day
 
 175
adult female 05day
 
 154
adult female 30day
 
 141
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 76
embryo 02-04hr
 
 235
embryo 04-06hr
 
 525
embryo 06-08hr
 
 386
embryo 08-10hr
 
 461
embryo 10-12hr
 
 311
embryo 12-14hr
 
 610
embryo 14-16hr
 
 231
embryo 16-18hr
 
 320
embryo 18-20hr
 
 280
embryo 20-22hr
 
 254
embryo 22-24hr
 
 422
larva L1
 
 227
larva L2
 
 169
larva L3 12hr old
 
 167
larva L3 puffstage 1-2
 
 85
larva L3 puffstage 3-6
 
 261
larva L3 puffstage 7-9
 
 423
white prepupae new
 
 504
white prepupae 12hr
 
 501
white prepupae 24hr
 
 596
pupae 2d postWPP
 
 591
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 282
adult male 01day
 
 336
adult male 05day
 
 259
adult male 30day
 
 196
adult female 01day
 
 175
adult female 05day
 
 154
adult female 30day
 
 141
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0085432 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 76
embryo 02-04hr
 
 235
embryo 04-06hr
 
 525
embryo 06-08hr
 
 386
embryo 08-10hr
 
 461
embryo 10-12hr
 
 311
embryo 12-14hr
 
 610
embryo 14-16hr
 
 231
embryo 16-18hr
 
 320
embryo 18-20hr
 
 280
embryo 20-22hr
 
 254
embryo 22-24hr
 
 422
larva L1
 
 227
larva L2
 
 169
larva L3 12hr old
 
 167
larva L3 puffstage 1-2
 
 85
larva L3 puffstage 3-6
 
 261
larva L3 puffstage 7-9
 
 423
white prepupae new
 
 504
white prepupae 12hr
 
 501
white prepupae 24hr
 
 596
pupae 2d postWPP
 
 591
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 282
adult male 01day
 
 336
adult male 05day
 
 259
adult male 30day
 
 196
adult female 01day
 
 175
adult female 05day
 
 154
adult female 30day
 
 141
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 76
embryo 02-04hr
 (235)
embryo 04-06hr
 (525)
embryo 06-08hr
 (386)
embryo 08-10hr
 (461)
embryo 10-12hr
 (311)
embryo 12-14hr
 (610)
embryo 14-16hr
 (231)
embryo 16-18hr
 (320)
embryo 18-20hr
 (280)
embryo 20-22hr
 (254)
embryo 22-24hr
 (422)
larva L1
 (227)
larva L2
 (169)
larva L3 12hr old
 (167)
larva L3 puffstage 1-2
 
 85
larva L3 puffstage 3-6
 (261)
larva L3 puffstage 7-9
 (423)
white prepupae new
 (504)
white prepupae 12hr
 (501)
white prepupae 24hr
 (596)
pupae 2d postWPP
 (591)
pupae 3d postWPP
 (502)
pupae 4d postWPP
 (282)
adult male 01day
 (336)
adult male 05day
 (259)
adult male 30day
 (196)
adult female 01day
 (175)
adult female 05day
 (154)
adult female 30day
 141
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 76
embryo 02-04hr
 
 235
embryo 04-06hr
 
 525
embryo 06-08hr
 
 386
embryo 08-10hr
 
 461
embryo 10-12hr
 
 311
embryo 12-14hr
 
 610
embryo 14-16hr
 
 231
embryo 16-18hr
 
 320
embryo 18-20hr
 
 280
embryo 20-22hr
 
 254
embryo 22-24hr
 
 422
larva L1
 
 227
larva L2
 
 169
larva L3 12hr old
 
 167
larva L3 puffstage 1-2
 
 85
larva L3 puffstage 3-6
 
 261
larva L3 puffstage 7-9
 
 423
white prepupae new
 
 504
white prepupae 12hr
 
 501
white prepupae 24hr
 
 596
pupae 2d postWPP
 
 591
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 282
adult male 01day
 
 336
adult male 05day
 
 259
adult male 30day
 
 196
adult female 01day
 
 175
adult female 05day
 
 154
adult female 30day
 
 141
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 76
embryo 02-04hr
 
 235
embryo 04-06hr
 
 525
embryo 06-08hr
 
 386
embryo 08-10hr
 
 461
embryo 10-12hr
 
 311
embryo 12-14hr
 
 610
embryo 14-16hr
 
 231
embryo 16-18hr
 
 320
embryo 18-20hr
 
 280
embryo 20-22hr
 
 254
embryo 22-24hr
 
 422
larva L1
 
 227
larva L2
 
 169
larva L3 12hr old
 
 167
larva L3 puffstage 1-2
 
 85
larva L3 puffstage 3-6
 
 261
larva L3 puffstage 7-9
 
 423
white prepupae new
 
 504
white prepupae 12hr
 
 501
white prepupae 24hr
 
 596
pupae 2d postWPP
 
 591
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 282
adult male 01day
 
 336
adult male 05day
 
 259
adult male 30day
 
 196
adult female 01day
 
 175
adult female 05day
 
 154
adult female 30day
 
 141
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 76
embryo 02-04hr
 
 235
embryo 04-06hr
 
 525
embryo 06-08hr
 
 386
embryo 08-10hr
 
 461
embryo 10-12hr
 
 311
embryo 12-14hr
 
 610
embryo 14-16hr
 
 231
embryo 16-18hr
 
 320
embryo 18-20hr
 
 280
embryo 20-22hr
 
 254
embryo 22-24hr
 
 422
larva L1
 
 227
larva L2
 
 169
larva L3 12hr old
 
 167
larva L3 puffstage 1-2
 
 85
larva L3 puffstage 3-6
 
 261
larva L3 puffstage 7-9
 
 423
white prepupae new
 
 504
white prepupae 12hr
 
 501
white prepupae 24hr
 
 596
pupae 2d postWPP
 
 591
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 282
adult male 01day
 
 336
adult male 05day
 
 259
adult male 30day
 
 196
adult female 01day
 
 175
adult female 05day
 
 154
adult female 30day
 
 141
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0085432


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0085432
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: adult brain.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Heatmap
Tissue   Expression Level
Larval Central Nervous System no informative data
Larval Midgut
 
 
Larval Hindgut no informative data
Larval Malpighian Tubules no informative data
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea no informative data
Larval Carcass no informative data
Adult Head no informative data
Adult Eye
 
 
Adult Brain no informative data
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut no informative data
Adult Hindgut no informative data
Adult Malpighian Tubules
 
 
Adult Fat Body no informative data
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca no informative data
Adult Ovary no informative data
Adult Testis no informative data
Adult Male Accessory Gland
 
 
Adult Carcass no informative data

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyExpress - Embryonic expression images (BDGP data)
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hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 24 )
For All Classical Alleles Show

Allele of panClassMutagenStocksKnown lesion
panciD
63 Yes
pan2amorphic allele - genetic evidence
2 Yes
pan13ahypomorphic allele - genetic evidence2 Yes
panED63662 --
pan3amorphic allele - genetic evidence
1 Yes
panc062681 --
panCB-6424-3
1 --
panf004041 --
panf022151 --
panf024871 --
panKG014311 --
pan[EY06866]1 --
pan13loss of function allele0 Yes
pan1
0 --
panCB-5204-30 Yes
panCB-5204-3r0 --
panER1
0 --
panIA50 Yes
panS250 Yes
panS280 Yes
panunspecified
0 --
panΔ310 Yes
panΔ3M0 Yes
panΔ9M0 Yes
hide Alleles Carried on Transgenic Constructs ( 20 )
For All Alleles Carried on Transgenic Constructs Show

Allele of panClassMutagenStocksKnown lesion
panScer\UAS.cWa4 Yes
panΔN.Scer\UASgain of function allele4 Yes
panGD104291 Yes
panGD15061 Yes
panJF023061 Yes
panKK1036011 Yes
panciD.Scer\UAS0 Yes
pandsRNA.cLa0 Yes
pandsRNA.cMa0 --
panhs.PW0 Yes
panK25A.Scer\UAS0 Yes
panScer\FRT.Rnor\CD2.Scer\UAS.T:Avic\GFP0 Yes
panScer\FRT.Rnor\CD2.Scer\UAS.T:Hsim\VP160 Yes
panScer\FRT.Rnor\CD2.Scer\UAS0 Yes
panScer\FRT.Rnor\CD2.Δ.Scer\UAS.T:Avic\GFP0 Yes
panScer\UAS.cCa0 Yes
panScer\UAS.T:Avic\GFP0 Yes
panScer\UAS.T:Hsim\VP160 Yes
panαTub84B.PC0 Yes
panΔ.Scer\UAS.T:Avic\GFP0 Yes
hide Aneuploid Aberrations
Disrupted in
Not disrupted in
Not duplicated in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
heat-shock construct
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap
insertion of mobile activating element
hide Gene Ontology: Function, Process & Cellular Component ( 24 unique terms )
hide Terms Based on Experimental Evidence ( 18 terms )
Molecular Function
CV term
References
inferred from physical interaction with hipk
inferred from physical interaction with Coop
Biological Process
CV term
References
Cellular Component
CV term
References
inferred from direct assay
inferred from physical interaction with Coop
hide Terms Based on Predictions or Assertions ( 7 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from sequence or structural similarity with mouse Tcf7l2
non-traceable author statement
traceable author statement
Cellular Component
CV term
References
inferred from sequence or structural similarity with mouse Tcf7l2
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
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hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
pan allele
Gene
References
hide External Data
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BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 89 )
Bloomington
Harvard
Kyoto
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 313 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Etymology
The gene is named 'pangolin' due to the 'lawn of denticles' phenotype of pan[13] homozygotes.
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: pan CG32005
Source for merge of: pan IA5
Additional comments
Annotations CG17964 and CG32005 merged as CG34403 in release 5.2 of the genome annotation.
hide Other Comments
dsRNA made from templates generated with primers directed against this gene has been transfected into Kc cells.
The pan product prevents rho expression in egg chambers.
ChEST reveals this is a target of Mef2.
In order to activate pan protein, arm protein must enter the nucleus and form a complex with lgs and pygo proteins.
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
pan may have both activator and repressor roles during embryonic patterning, while for wing development pan operates primarily in the activator mode.
FlyBase curator comment: FBrf0151816 has been retracted, see Struhl, 2004, Cell 116(3): 481.
New annotation (CG32005) in release 3 of the genome annotation.
Induction of slp1 by wg involves pan binding to multiple binding sites within a wg-responsive enhancer in the 5' region of slp1.
arm and pan act together with JNK signalling pathways in both ventral patterning and dorsal closure.
The primary function of pan protein binding to the dpp visceral mesoderm enhancer is repression throughout the visceral mesoderm.
The arm/pan protein complex has a role in the activation of apoptosis during retinal development.
The pan gene product can function as either an activator or a repressor of wg-responsive genes depending on the state of the wg signalling pathway and thus the availability of arm, the pan product coactivator. In the absence of arm, pan acts to repress wg responsive genes, with the gro protein acting as a corepressor.
Genomic organisation of pan is determined: a single copy gene spanning approximately 50kb and composed of 13 exons that share conservation with the exon/intron boundaries of human TCF-1.
The nej gene product represses pan to antagonise wg signalling.
The pan segment polarity gene encodes a product required downstream of arm for wg signal transduction in vivo.
pan complexes with arm to form a transcriptional activator of wg target genes.
pan forms a bipartite transcription factor with arm which can potently activate transcription.
Mutations in pan cause a segment polarity phenotype.
pan functions directly downstream of arm in the establishment of segment polarity and provides a molecular mechanism for gene control by wg signalling.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
FlyReactome - A curated knowledgebase of Drosophila melanogaster pathways
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
REDfly - A database of transcriptional regulatory elements.
hide Synonyms & Secondary IDs ( 39 )
Reported As
Symbol Synonym
dTCF
(Parker et al., 2007, Furlong, 2005, Newfeld, 2005, Zirin and Mann, 2004, Furlong, 2004, Farge, 2003, Newfeld et al., 2005, Newfeld and Takaesu, 2005, Thompson, 2004, Townsley et al., 2004, Syed et al., 2004, Johnson and Newfeld, 2004, Jagla et al., 2004, Guruharsha et al., 2004, Bienz and Clevers, 2003, Jones and Bejsovec, 2003, Klochendler-Yeivin et al., 2002, Thompson et al., 2002, Galis et al., 2002, Butler et al., 2003, Carrera et al., 2003, Lawrence, 2001, Singh et al., 2002, Pandur et al., 2002, Nakagoshi et al., 2002, Cavodeassi et al., 2002, Barolo and Posakony, 2002, Thompson et al., 2002, Barolo and Posakony, 2002, Baylies and Michelson, 2001, Tolwinski and Wieschaus, 2001, Lee and Treisman, 2001, Verheyen et al., 2001, Freeman and Bienz, 2001, Bienz and Clevers, 2000, Ghazi and VijayRaghavan, 2000, Halfon et al., 2000, Simon, 2000, Goodman and Smolik, 2000, McEwen and Peifer, 2000, Pichaud and Casares, 2000, Llimargas, 2000, Cox et al., 2000, Halfon et al., 2000, Seidensticker and Behrens, 2000, Casares and Mann, 2000, Pages and Kerridge, 2000, Glass and Rosenfeld, 2000, Buratovich et al., 2000, Roose and Clevers, 1999, McCartney et al., 1999, van de Wetering, 1996.10.31, Helms et al., 1999, Bejsovec, 1999, Willert et al., 1999, Moline et al., 1999, McCartney et al., 1999, Johnston et al., 1999, Gritzan et al., 1999, Vousden, 1999, Lavery et al., 1999, Kouzarides, 1999, Hays et al., 1999, Cox et al., 1999, Yu et al., 1998, Ben-Ze'ev and Geiger, 1998, Russ, 1998, Cavallo et al., 1998, van Beest et al., 1998, Waltzer and Bienz, 1998, Hazelett et al., 1998, Johnston and Edgar, 1998, Ahmed et al., 1998, Cadigan et al., 1998, Bienz, 1998, Park et al., 1998, Polevoy et al., 1998, Cox and Peifer, 1998, Cox et al., 1997, Clevers and van de Wetering, 1997, Kronhamn and Rasmuson-Lestander, 1997, Cavallo et al., 1997, van de Wetering et al., 1997, Peifer et al., 1997, Cavallo et al., 1997, Maqbool et al., 2006, Theisen et al., 2007, Chung et al., 2007, Benchabane et al., 2011, Benchabane et al., 2011, Kennell and Cadigan, 2008, Philippakis et al., 2006, Chan et al., 2007, Herranz et al., 2008, DeFalco et al., 2008, de la Roche and Bienz, 2007, Tanaka et al., 2007, Tran et al., 2008, Zirin and Mann, 2007, Lin et al., 2008, Dichtel-Danjoy et al., 2009, Mieszczanek et al., 2008, Tokusumi et al., 2009, Singh et al., 2010, Taniue et al., 2010, Metcalfe et al., 2010, Silver et al., 2007, Liu et al., 2010)
l(4)102ABb
 
Name Synonym
CG32005
 
lymphocyte enhancer binding factor 1/T cell factor
Secondary FlyBase IDs
  • FBgn0019664
  • FBgn0022393
  • FBgn0052005
hide References ( 392 )
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hide Recent research papers ( 15 )
Benchabane et al., 2011, EMBO J. 30(8): 1444--1458
Jerky/Earthbound facilitates cell-specific Wnt/Wingless signalling by modulating β-catenin-TCF activity. [FBrf0213544]
Bhambhani et al., 2011, EMBO J. 30(10): 2031--2043
The oligomeric state of CtBP determines its role as a transcriptional co-activator and co-repressor of Wingless targets. [FBrf0213805]
Eivers et al., 2011, Sci. Signal. 4(194):
Phosphorylation of Mad Controls Competition Between Wingless and BMP Signaling. [FBrf0216411]
Gibert et al., 2011, PLoS Genet. 7(1): e1001280
Segregating Variation in the Polycomb Group Gene cramped Alters the Effect of Temperature on Multiple Traits. [FBrf0212864]
Gonsalves et al., 2011, Proc. Natl. Acad. Sci. U.S.A. 108(15): 5954--5963
An RNAi-based chemical genetic screen identifies three small-molecule inhibitors of the Wnt/wingless signaling pathway. [FBrf0214389]
Cordero and Cagan, 2010, Dev. Dyn. 239(3): 875--884
Canonical wingless signaling regulates cone cell specification in the Drosophila retina. [FBrf0210104]
Jones et al., 2010, J. Cell Sci. 123(13): 2179--2189
Cytokinesis proteins Tum and Pav have a nuclear role in Wnt regulation. [FBrf0211056]
Konikoff et al., 2010, J. Mol. Evol. 70(4): 303--312
Distinct molecular evolutionary mechanisms underlie the functional diversification of the Wnt and TGFbeta signaling pathways. [FBrf0210842]
Li et al., 2010, Genes Dev. 24(9): 933--946
Polycomb group genes Psc and Su(z)2 restrict follicle stem cell self-renewal and extrusion by controlling canonical and noncanonical Wnt signaling. [FBrf0210675]
Liu et al., 2010, J. Cell. Biochem. 109(5): 992--999
JAK-STAT is restrained by Notch to control cell proliferation of the Drosophila intestinal stem cells. [FBrf0210433]
Metcalfe et al., 2010, J. Cell Sci. 123(9): 1588--1599
Stability elements in the LRP6 cytoplasmic tail confer efficient signalling upon DIX-dependent polymerization. [FBrf0210630]
Singh et al., 2010, Development 137(8): 1351--1360
Dendritic refinement of an identified neuron in the Drosophila CNS is regulated by neuronal activity and Wnt signaling. [FBrf0210379]
Song et al., 2010, Genes Dev. 24(9): 881--886
Coop functions as a corepressor of Pangolin and antagonizes Wingless signaling. [FBrf0213249]
Taniue et al., 2010, Development 137(10): 1755--1764
Sunspot, a link between Wingless signaling and endoreplication in Drosophila. [FBrf0210642]
Zimmerman et al., 2010, Dev. Biol. 340(1): 54--66
Apical constriction and invagination downstream of the canonical Wnt signaling pathway require Rho1 and Myosin II. [FBrf0210185]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010