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Gene Dmel\spri

General Information
Symbol	Dmel\spri	Species	D. melanogaster
Name	sprint	Annotation symbol	CG34414
Feature type	protein_coding_gene	FlyBase ID	FBgn0085443
Gene Model Status	Current	Stock availability	40 publicly available
Also Known As	sprint, CG33175
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	9D2-9D3	Sequence location	X:10,384,102..10,479,455 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene sprint is referred to in FlyBase by the symbol Dmel\spri (CG34414, FBgn0085443). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: receptor tyrosine kinase binding; Ras GTPase binding; protein kinase binding. There is experimental evidence that it is involved in the biological process: endocytosis; border follicle cell migration. 52 alleles are reported. No phenotypic data is available. It has 13 annotated transcripts and 13 annotated polypeptides. Protein features are: Ras-association; SH2 domain; Vacuolar sorting protein 9; Vacuolar sorting protein 9, subgroup. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 and 12-24 hour embryonic stages, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: adult Malpighian tubules, adult ovary. Gene sequence location is X:10384102..10479455.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02	Controlled Vocabulary Terms endocytic vesicle cell cortex receptor tyrosine kinase binding guanyl-nucleotide exchange factor activity protein kinase binding
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 9D2-9D3   Limits computationally determined from genome sequence between P{EP}PPP4R2rEP307 and P{EP}rasEP1235&P{EP}rasEP1427
Experimentally Determined Cytological Location
Cytogenetic map Notes References 9C-9C     (Szabo, 2000.10.11)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\spri for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene merge based on EST/cDNA data Gene model reviewed during 5.42 Gene model reviewed during 5.43 Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters. Low-frequency RNA-Seq exon junction(s) not annotated. Gene model reviewed during 5.48
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) spri-RA FBtr0112688  NM_206678   6571   1789 spri-RE FBtr0310291  NM_001272484   5930   1776 spri-RF FBtr0310292  NM_001272485   6136   1776 spri-RG FBtr0112689  NM_176723   5949   1776 spri-RI FBtr0112690  NM_001103474   3143   721 spri-RJ FBtr0310293  NM_001103471   5170   1449 spri-RL FBtr0310295  NM_001272486   6518   1789 spri-RM FBtr0310296  NM_001272487   6440   1789 spri-RN FBtr0310438  NM_001272488   5301   1541 spri-RO FBtr0310439  NM_001272489   7333   2043 spri-RP FBtr0336902  NM_001272490   3089   443 spri-RQ FBtr0336903  NM_001272491   2896   637 spri-RR FBtr0336904  NM_001272492   6738   1541
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein spri-PA   FBpp0111600   193.3   1789   6.71     NP_996401   AAS65425 spri-PE   FBpp0301974   190.4   1776   5.67     NP_001259413   AGB95256 spri-PF   FBpp0301975   190.4   1776   5.67     NP_001259414   AGB95257 spri-PG   FBpp0111601   190.4   1776   5.67     NP_788896   AAF46599 spri-PI   FBpp0111602   81.5   721   6.79     NP_001096944   AAF46597 spri-PJ   FBpp0301976   156.4   1449   5.51     NP_001096941   AAO41647 spri-PL   FBpp0301978   193.3   1789   6.71     NP_001259415   AGB95258 spri-PM   FBpp0301979   193.3   1789   6.71     NP_001259416   AGB95259 spri-PN   FBpp0302586   166.1   1541   5.73     NP_001259417   AGB95260 spri-PO   FBpp0302587   219.9   2043   6.68     NP_001259418   AGB95261 spri-PP   FBpp0307842   49.7   443   7.50     NP_001259419   AGB95262 spri-PQ   FBpp0307843   71.6   637   6.63     NP_001259420   AGB95263 spri-PR   FBpp0307844   166.1   1541   5.73     NP_001259421   AGB95264
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Vacuolar sorting protein 9 (IPR003123) SH2 domain (IPR000980) Ras-association (IPR000159) Vacuolar sorting protein 9, subgroup (IPR013995)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA141418   AA567470   AE014298 AAF46597   AE014298 AAF46599   AE014298 AAO41647   AE014298 AAS65425   AF312692 AAK28059   AF312693 AAK28060   AE014298 AGB95256   AE014298 AGB95257   AE014298 AGB95258   AE014298 AGB95259   AE014298 AGB95260   AE014298 AGB95261   AE014298 AGB95262   AE014298 AGB95263   AE014298 AGB95264   AI238321   AI404835   AI514793   AI532897   AI533980   AW944454   AX777421   AY089220 AAL89958   AY122253 AAM52765   AY122263 AAM52775   BE977248   BF493548   BG635838   BG637296   BG639699   BI483062   BI485507   BI575121   BI580908   BI608853   BI611607   BI617141   BI639000   BI640172   BP555563   BT023879   BT099829   CO153000   CO154889   CO155460   CO155476   CO155900   CO156926   CO273255   CO279049   CO305633   CO308177   CO308828   CO309818   CO309987   CO322372   CO324841   CO325004   CO333500   CO341943   CZ474061   CZ484895   DQ327757   EC063983   EC077876   EC079112   EC087445   EC087912   EC203432   EC203738   EC203825   EC211897   EC215020   EC223860   EC235297   EC251270   EC256477   EC262018   EV576842   EV588129   GH754213   GH756682   GH757513   GH758221   GH760211   GH760309   GH772345   GH777270   GH777701   GH778145   GH778506   GH779928   GH782052   GH783310   GH785183   GH786021   GH788758   GH788923   GH793361   GH794822   GH794902   GH802351   GH804034   GH809698   GH811154   GH822196   GH822466   GH825666   GH826263   GH832875   GH834093   GH835471   GH838316   GH844640   GH844856   GH845878   GH848031   GH848123   GH853852   GH854057   GH857702   GH858535   GH864111   GH865062   GH869657   GH871062   GH871361   GH872024   GH872382   GH873026   GH873080   GH873224   GH873420   GH876957   GH877033   GH877133   GH881294   GH883719   GH884605   GH891373   GH893454   GH893480   GH893590   GH893637   GH893707   GH895495   GH897424   GH900225   GH901221   GH901706   GH905868   GH908109   GH911975   GH913494   GH914166   GH914932   GH917614   GH921845   GH922699   GH924404   GH928692   GH930421   GH931189   GH931997   GH932789   GH935126   GH936613   GH940863
UniProtKB/Swiss-Prot	Q8MQW8
UniProtKB/TrEMBL	Q9W2U1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 5   organism | 0% egg length   (Szabo et al., 2001) embryonic stage 5 -- 8   posterior endoderm   (Szabo et al., 2001) embryonic stage 6 -- 8   anterior endoderm   (Szabo et al., 2001) embryonic stage 9 -- 13   anterior midgut primordium   (Szabo et al., 2001) embryonic stage 11 -- 13   posterior midgut primordium   (Szabo et al., 2001) embryonic stage 11 -- 14   amnioserosa   (Szabo et al., 2001) embryonic stage 13   anterior midgut primordium   (Szabo et al., 2001) embryonic stage 14 -- 17   embryonic/larval neuron of ventral nerve cord   (Szabo et al., 2001) organism | lateral & striped   (Szabo et al., 2001) northern blot Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 4   organism   (Szabo et al., 2001) Comment:0-2 hr AEL embryonic stage 7 -- 17   organism   (Szabo et al., 2001) Comment:3-18 hr AEL adult stage | female   ovary   (Szabo et al., 2001)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Dorus et al., 2006)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
cell cortex inferred from direct assay (Jekely et al., 2005) endocytic vesicle inferred from direct assay (Jekely et al., 2005)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: adult Malpighian tubules, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    16 central nervous system, pupae P8    15 head, virgin 1-day female    4 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    11 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    16 central nervous system, pupae P8    15 head, virgin 1-day female    4 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    11 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    16 central nervous system, pupae P8    15 head, virgin 1-day female    4 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    11 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    16 central nervous system, pupae P8    15 head, virgin 1-day female    4 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    11 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    16 central nervous system, pupae P8    15 head, virgin 1-day female    4 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    11 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    16 central nervous system, pupae P8    15 head, virgin 1-day female    4 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    11 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    16 central nervous system, pupae P8    15 head, virgin 1-day female    4 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    11 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    16 central nervous system, pupae P8    15 head, virgin 1-day female    4 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    11 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 and 12-24 hour embryonic stages, at stages throughout the pupal period. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    15 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    10 embryo 14-16hr    21 embryo 16-18hr    29 embryo 18-20hr    36 embryo 20-22hr    10 embryo 22-24hr    10 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    10 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    16 pupae 2d postWPP    22 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    6 adult male 05day    5 adult male 30day    5 adult female 01day    11 adult female 05day    14 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    15 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    10 embryo 14-16hr    21 embryo 16-18hr  (29) embryo 18-20hr  (36) embryo 20-22hr    10 embryo 22-24hr    10 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    10 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    16 pupae 2d postWPP    22 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    6 adult male 05day    5 adult male 30day    5 adult female 01day    11 adult female 05day    14 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    15 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    10 embryo 14-16hr    21 embryo 16-18hr    29 embryo 18-20hr    36 embryo 20-22hr    10 embryo 22-24hr    10 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    10 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    16 pupae 2d postWPP    22 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    6 adult male 05day    5 adult male 30day    5 adult female 01day    11 adult female 05day    14 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    15 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    10 embryo 14-16hr    21 embryo 16-18hr    29 embryo 18-20hr    36 embryo 20-22hr    10 embryo 22-24hr    10 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    10 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    16 pupae 2d postWPP    22 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    6 adult male 05day    5 adult male 30day    5 adult female 01day    11 adult female 05day    14 adult female 30day    14 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    15 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    10 embryo 14-16hr    21 embryo 16-18hr    29 embryo 18-20hr    36 embryo 20-22hr    10 embryo 22-24hr    10 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    10 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    16 pupae 2d postWPP    22 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    6 adult male 05day    5 adult male 30day    5 adult female 01day    11 adult female 05day    14 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    15 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    10 embryo 14-16hr    21 embryo 16-18hr  29 embryo 18-20hr  (36) embryo 20-22hr    10 embryo 22-24hr    10 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    10 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    16 pupae 2d postWPP    22 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    6 adult male 05day    5 adult male 30day    5 adult female 01day    11 adult female 05day    14 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    15 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    10 embryo 14-16hr    21 embryo 16-18hr    29 embryo 18-20hr    36 embryo 20-22hr    10 embryo 22-24hr    10 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    10 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    16 pupae 2d postWPP    22 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    6 adult male 05day    5 adult male 30day    5 adult female 01day    11 adult female 05day    14 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    15 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    10 embryo 14-16hr    21 embryo 16-18hr    29 embryo 18-20hr    36 embryo 20-22hr    10 embryo 22-24hr    10 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    10 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    16 pupae 2d postWPP    22 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    6 adult male 05day    5 adult male 30day    5 adult female 01day    11 adult female 05day    14 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    7 embryonic 1182-4H    16 embryonic GM2    7 embryonic Kc167    10 embryonic S1    5 embryonic S3    11 leg disc CME L1    7 wing disc CME-W2    7 wing disc ML-DmD8    6 wing disc ML-DmD9    25 wing disc ML-DmD16-c3    30 wing disc ML-DmD21    9 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    7 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    7 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    7 embryonic 1182-4H    16 embryonic GM2    7 embryonic Kc167    10 embryonic S1    5 embryonic S3    11 leg disc CME L1    7 wing disc CME-W2    7 wing disc ML-DmD8    6 wing disc ML-DmD9    25 wing disc ML-DmD16-c3  (30) wing disc ML-DmD21    9 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3  (29) eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    7 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    7 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    7 embryonic 1182-4H    16 embryonic GM2    7 embryonic Kc167    10 embryonic S1    5 embryonic S3    11 leg disc CME L1    7 wing disc CME-W2    7 wing disc ML-DmD8    6 wing disc ML-DmD9    25 wing disc ML-DmD16-c3    30 wing disc ML-DmD21    9 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    7 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    7 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    7 embryonic 1182-4H    16 embryonic GM2    7 embryonic Kc167    10 embryonic S1    5 embryonic S3    11 leg disc CME L1    7 wing disc CME-W2    7 wing disc ML-DmD8    6 wing disc ML-DmD9    25 wing disc ML-DmD16-c3    30 wing disc ML-DmD21    9 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    7 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    7 ovary OSS    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    7 embryonic 1182-4H    16 embryonic GM2    7 embryonic Kc167    10 embryonic S1    5 embryonic S3    11 leg disc CME L1    7 wing disc CME-W2    7 wing disc ML-DmD8    6 wing disc ML-DmD9    25 wing disc ML-DmD16-c3    30 wing disc ML-DmD21    9 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    7 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    7 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    7 embryonic 1182-4H    16 embryonic GM2    7 embryonic Kc167    10 embryonic S1    5 embryonic S3    11 leg disc CME L1    7 wing disc CME-W2    7 wing disc ML-DmD8    6 wing disc ML-DmD9    25 wing disc ML-DmD16-c3  30 wing disc ML-DmD21    9 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3  29 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    7 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    7 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    7 embryonic 1182-4H    16 embryonic GM2    7 embryonic Kc167    10 embryonic S1    5 embryonic S3    11 leg disc CME L1    7 wing disc CME-W2    7 wing disc ML-DmD8    6 wing disc ML-DmD9    25 wing disc ML-DmD16-c3    30 wing disc ML-DmD21    9 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    7 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    7 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    7 embryonic 1182-4H    16 embryonic GM2    7 embryonic Kc167    10 embryonic S1    5 embryonic S3    11 leg disc CME L1    7 wing disc CME-W2    7 wing disc ML-DmD8    6 wing disc ML-DmD9    25 wing disc ML-DmD16-c3    30 wing disc ML-DmD21    9 wing disc ML-DmD32    19 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    3 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    7 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    7 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    1 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    1 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    1 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    1 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    1 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    1 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    1 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    1 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_27 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	BDGP expression data • SD06366 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0085443 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG32680-RB;CG33175-RH;CG33175-RF;CG32674-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable spri6G1 viable, with Scer\GAL4pnr-MD237 spriGD8754 spriGD8966 spriGD15009 spriGD15105 Sterility Allele fertile spri6G1 Phenotype manifest in Allele
Classical Alleles ( 44 )
For All Classical Alleles Show
Allele of spri Class Mutagen Stocks Known lesion spriG0329b 2 -- spri5-HA-1556 1 -- spri5-HA-1784 1 -- spric06698 1 -- spriCB-0037-3 1 -- spriCB-0449-3 1 -- spriCB-0612-3 1 -- spriCB-5784-3 1 -- spriCB-6819-3 1 -- sprid01958 1 -- sprid04096 1 -- sprid05295 1 -- sprie03294 1 -- spriEY04412 1 -- sprif01163 1 -- sprif02386 piggyBac transposase 1 -- sprif02883 1 -- sprif03739 1 -- spriG1779 P-element activity 1 -- spriGS1079 1 Yes spriKG07279 1 -- spriMI06860 1 -- spriNP0820 1 -- spriNP1080 1 -- spriNP2674 1 -- spriNP3267 1 -- spriNP5027 1 -- spriNP7180 1 -- spriNP7219 1 -- spriNP7259 1 -- spri6G1 P-element activity 0 Yes sprid04354 0 -- sprid04672 P-element activity 0 -- sprid05256 0 -- sprid06121 0 -- sprid06691 0 -- spriEP1487 P-element activity 0 Yes spriEP1492 0 -- spriex153 P-element activity 0 Yes sprif03740 0 -- spriGG01067 0 -- spriGG01171 0 -- spriNP4162 0 -- spriP2.3.03 Delta2-3 0 Yes
Alleles Carried on Transgenic Constructs ( 8 )
For All Alleles Carried on Transgenic Constructs Show
Allele of spri Class Mutagen Stocks Known lesion spriGD8966 in vitro construct - RNAi in vitro construct - regulatory fusion 3 Yes spriGD15009 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes spriGD15105 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes spriGD8754 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes spriKK102631 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes spriKK105547 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes spriGD8967 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes spriNIG.15300R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8754} NA P{GD8966} NA P{GD8967} NA P{GD15009} NA P{GD15105} NA P{KK102631} NA P{KK105547} NA P{NIG.15300R} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}spriEP1487 NA P{EP}spriEP1492 NA P{EP}spriG1779 NA P{EPgy2}spriEY04412 NA P{GSV1}CG42353GS1079 NA P{Mae-UAS.6.11}spriGG01067 NA P{Mae-UAS.6.11}spriGG01171 NA P{Mae-UAS.6.11}spriP2.3.03 NA P{XP}sprid01958 NA P{XP}sprid04096 NA P{XP}sprid04354 NA P{XP}sprid04672 NA P{XP}sprid05256 NA P{XP}sprid05295 NA P{XP}sprid06121 NA P{XP}sprid06691 NA miscellaneous insertions Mi{MIC}spriMI06860 NA P{RS3}spriCB-0037-3 NA P{RS3}spriCB-0449-3 NA P{RS3}spriCB-0612-3 NA P{RS3}spriCB-5784-3 NA P{RS3}spriCB-6819-3 NA P{RS5}spri5-HA-1556 NA P{RS5}spri5-HA-1784 NA P{SUPor-P}spriKG07279 NA PBac{PB}spric06698 NA PBac{RB}sprie03294 NA PBac{WH}sprif01163 NA PBac{WH}sprif02386 NA PBac{WH}sprif02883 NA PBac{WH}sprif03739 NA PBac{WH}sprif03740 NA insertion of enhancer trap binary system P{GawB}spriNP0820 No P{GawB}spriNP1080 No P{GawB}spriNP2674 No P{GawB}spriNP3267 No P{GawB}spriNP4162 No P{GawB}spriNP5027 No P{GawB}spriNP7180 No P{GawB}spriNP7219 No P{GawB}spriNP7259 No insertion of enhancer trap P{lacW}spriG0329b No
Gene Ontology: Function, Process & Cellular Component ( 9 unique terms )
Terms Based on Experimental Evidence ( 7 terms )
Molecular Function
CV term Evidence References
protein kinase binding inferred from physical interaction with Abl (Jekely et al., 2005) Ras GTPase binding inferred from physical interaction with Ras85D (Jekely et al., 2005) receptor tyrosine kinase binding inferred from physical interaction with Pvr, Egfr (Jekely et al., 2005)
Biological Process
CV term Evidence References
border follicle cell migration inferred from genetic interaction with Cbl (Jekely et al., 2005) inferred from genetic interaction with Egfr (Jekely et al., 2005) inferred from genetic interaction with Pvr (Jekely et al., 2005) endocytosis inferred from mutant phenotype (Jekely et al., 2005)
Cellular Component
CV term Evidence References
cell cortex inferred from direct assay (Jekely et al., 2005) endocytic vesicle inferred from direct assay (Jekely et al., 2005)
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
guanyl-nucleotide exchange factor activity inferred from sequence or structural similarity with mouse Rinl (Jekely et al., 2005) Ras GTPase binding inferred from sequence or structural similarity (Szabo, 2000.10.11) inferred from sequence or structural similarity with EMBL:U80076 (FlyBase, 1992-) inferred from sequence or structural similarity with UniProtKB:Q8TB24 (Swiss-Prot Project Members, 2003.9.15)
Biological Process
CV term Evidence References
endocytosis inferred from sequence or structural similarity with UniProtKB:Q8TB24 (Swiss-Prot Project Members, 2003.9.15) signal transduction inferred from electronic annotation with InterPro:IPR000159 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions spri allele Gene References unspecified os (Mukherjee et al., 2006)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 58410 DroID - A comprehensive database of gene and protein interactions. • FBgn0085443 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31987 SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores. • Q8MQW8
Orthologs
OrthoDB Orthologs (39) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6CZC17 Dipteran inclusive ortholog search EOG6SN1WN Insect inclusive ortholog search EOG6WDC6M Arthropod inclusive ortholog search EOG67M0CR Metazoa inclusive ortholog search EOG63VBN5
Orthologs in Drosophila Species (EOG6CZC17)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\spri     Drosophila simulans   Dsim\GD24547     Drosophila simulans   Dsim\GD24548     Drosophila sechellia   Dsec\GM11307     Drosophila sechellia   Dsec\GM11306     Drosophila erecta   Dere\GG18915     Drosophila yakuba   Dyak\GE15387     Drosophila yakuba   Dyak\GE22504     Drosophila yakuba   Dyak\GE22780     Drosophila ananassae   Dana\GF19553     Drosophila pseudoobscura pseudoobscura   Dpse\GA26435     Drosophila persimilis   Dper\GL14882     Drosophila willistoni   Dwil\GK19766     Drosophila virilis   Dvir\GJ14716     Drosophila mojavensis   Dmoj\GI15062     Drosophila grimshawi   Dgri\GH12710
Orthologs in non-Drosophila Dipterans (EOG6SN1WN)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL001142   Anopheles gambiae Malaria mosquito  Agam\AGAP002493   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ009996
Orthologs in non-Dipteran Insects (EOG6WDC6M)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB53396   Apis mellifera Western honey bee  Amel\GB53397   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG021845   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH26903   Atta cephalotes Leafcutter ant  Acep\ACEP21765   Camponotus floridanus Florida carpenter ant  Cflo\CFLO13688   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL15563   Linepithema humile Argentine ant  Lhum\LH12967   Pogonomyrmex barbatus Red harvester ant  Pbar\PB10876   Solenopsis invicta Red fire ant  Sinv\SINV25142   Solenopsis invicta Red fire ant  Sinv\SINV16310   Solenopsis invicta Red fire ant  Sinv\SINV11765   Acyrthosiphon pisum Pea aphid  Apim\ACYPI003749   Pediculus humanus Human body louse  Phum\PHUM288210   Tribolium castaneum Red flour beetle  Tcas\GLEAN_07758
Orthologs in non-Insect Arthropods (EOG67M0CR)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\pad   Ixodes scapularis Deer tick  Isca\ISCW014154
Orthologs in non-Arthropod Metazoa (EOG63VBN5)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\tag-333   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_004866gn   Danio rerio Zebrafish  Drer\ENSDARG00000077040
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 40 )
Harvard	- P{XP}sprid01958 - P{XP}sprid04096 - P{XP}sprid05295 - PBac{PB}spric06698 - PBac{RB}sprie03294 - PBac{WH}sprif01163 - PBac{WH}sprif02386 - PBac{WH}sprif02883 - PBac{WH}sprif03739
VDRC	v101164 P{KK105547}VIE-260B v106127 P{KK102631}VIE-260B v38884 w1118 P{GD8966}v38884
	More stocks available...
Genomic Clones ( 3 )
	BACR10I17 BACR29G02 BACR48E06 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 146 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT01839 RE74861 SD06366 SD13337
Other clones	MIP09847
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH14344 GH24673 HL01311 LD46482 RE65902 RE68843 RE75155 RH13562 RH17963 RH27989 RH47378 SD15221 SD21425 SD22975
Other clones	62449 66772 67133 76704 97178 104740 146164 153509 153577 156653 159744 272536 281910 292240 bs61e03 CK01711 Dmel_dig_000811_0606_3621 Dmel_neb_001964_0080_3138 EC256477 EK110245 EK133352 EK188011 EK194954 EK195358 EK219414 EK220209 EK249134 EK256918 EK259453 EK307122 EN01055 EN04964 EN06105 EN06129 EN06942 EN09564 EP13463 FGM235H11 RP003032337 RP003041756 RP003051925 RP003052337 RP003073917 RP003080042 RP003103608 RP003104836 RP003108348 RP003117972 RP003136677 RP003181184 RP003185053 RP003188579 RP003200857 RP003209788 RP003210204 RP003219073 RP003219179 RP003231162 RP003233218 RP003241215 RP003249263 RP003250178 RP003258535 RP003259606 RP003261172 RP003261719 RP003272242 RP003275812 RP003277843 RP003287819 RP003289792 RP003295630 RP003296434 RP003296931 RP003299043 RP003299921 RP003305632 RP003311414 RP003321361 RP003321694 RP003328731 RP003339457 RP003343182 RP003343747 RP003353848 RP003354203 RP003354317 RP003354615 RP003357195 RP003400786 RP003407782 RP003413535 RP003425090 RP003432495 RP003433805 RP003446043 RP003459277 RP003462109 RP003469961 RP003476341 RP003476672 RP003478366 RP003488796 RP003491453 RP003492780 RP003525809 RP003532904 RP003535078 RP003546632 RP003548176 RP003556231 RP003585783 RP003598729 RP003601832 RP003607151 RP003609382 RP003609398 RP003611247 RP003614828 RP003618502 RP003642896 RP003643073 RP003646270 RP003662215 RP003665925 RP003670476 SD04543
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0085443 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31987
Antibody Information
Other Information
Discoverer
Etymology
	The gene is named "sprint" for "SH2, poly-proline containing Ras interactor". (Szabo et al., 2001)
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: spri CG12638 CG15297 CG15298 CG15299 CG15300 CG15301 (FlyBase, 1996-)
Source for database merge of	Source for merge of: spri anon-WO03040301.275 (FlyBase, 1996-) Source for merge of: spri CG12638 CG15297 CG15298 CG15299 CG15300 CG15301 (Szabo et al., 2001) Source for merge of: spri CG32674 (FlyBase Genome Annotators, 2004) Source for merge of: spri CG32680 (FlyBase Genome Annotators, 2007)
Additional comments	Annotations CG33175 and CG32680 merged as CG34414 in release 5.2 of the genome annotation. (FlyBase Genome Annotators, 2007) Source for identity of spri CG12638 CG15297 CG15298 CG15299 CG15300 CG15301 was sequence comparison (date:010411). (FlyBase Genome Annotators, 2004, FlyBase, 1996-) Release 3 annotation for spri (CG33175) contains sequences corresponding to release 2 annotations CG15297, CG15298, CG15299, CG15300 and part of CG15301. Annotation CG15301 split into CG32680 and part of spri (CG33175) in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003) Source for merge of spri anon-WO03040301.275 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	Nonsense-mediated mRNA decay (NMD) down-regulates a distinct splice isoform(s) of this gene. (Hansen et al., 2009) New annotation (CG32674) in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_176723 NM_206678 NM_001103471 NM_001103474 NM_001272484 NM_001272485 NM_001272486 NM_001272487 NM_001272488 NM_001272489 NM_001272490 NM_001272491 NM_001272492 RefSeq (Proteins) • NP_788896 NP_996401 NP_001096941 NP_001096944 NP_001259413 NP_001259414 NP_001259415 NP_001259416 NP_001259417 NP_001259418 NP_001259419 NP_001259420 NP_001259421 DDBJ / EMBL / GenBank • AAF46597 AAF46599 AAK28059 AAK28060 AAL89958 AAM52765 AAM52775 AAO41647 AAS65425 AF312692 AF312693 AGB95256 AGB95257 AGB95258 AGB95259 AGB95260 AGB95261 AGB95262 AGB95263 AGB95264 AI533980 AW944454 AX777421 AY089220 AY122253 AY122263 BF493548 BG635838 CZ474061 CZ484895 DQ327757 Entrez Gene - A searchable database of RefSeq genes. • 31987 UniProtKB/Swiss-Prot • Q8MQW8 UniProtKB/TrEMBL • Q9W2U1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Vacuolar sorting protein 9 (IPR003123) SH2 domain (IPR000980) Ras-association (IPR000159) Vacuolar sorting protein 9, subgroup (IPR013995) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • SD06366
Linkouts
	BioGRID - A database of protein and genetic interactions • 58410 DroID - A comprehensive database of gene and protein interactions. • FBgn0085443 DRSC - Results from RNAi screens. • FBgn0085443 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0085443 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG32680-RB;CG33175-RH;CG33175-RF;CG32674-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0085443 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31987 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31987 modMine - Data generated by the modENCODE project. • FBgn0085443 SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores. • Q8MQW8
Synonyms & Secondary IDs ( 18 )
Reported As
Symbol Synonym	anon-WO03040301.275   CG12638 (Hutter, 2002, ) CG15297 (Hutter, 2002, ) CG15298 (Hutter, 2002, ) CG15299 (Hutter, 2002, ) CG15300 (Hutter, 2002, ) CG15301 (Hutter, 2002, ) CG32674 (Giot et al., 2003, ) CG32680   CG33175 (Hansen et al., 2009, Kanuka et al., 2005) CG34414 (FlyBase Genome Annotators, 2007, Keleman et al., 2009.8.5, Chang et al., 2008) Rin1 (Mukherjee et al., 2006) Spri (Mukherjee et al., 2006) spri (Dorus et al., 2006, Chang et al., 2008, Hansen et al., 2009, Manak et al., 2006, Kanuka et al., 2005, Japanese National Institute of Genetics, 2012.5.21) sprint (Hutter, 2007, Jekely et al., 2005)
Name Synonym	CG32680   Sprint (Mukherjee et al., 2006, Jekely et al., 2005, Carney et al., 2006) sprint (Szabo et al., 2001, Chang et al., 2008) sprint-a (Barbash et al., 2003) sprint-b (Barbash et al., 2003)
Secondary FlyBase IDs
	FBan0032680 FBgn0030211 FBgn0030212 FBgn0030213 FBgn0030214 FBgn0030216 FBgn0040944 FBgn0052674 FBgn0052680 FBgn0053175 FBgn0066810
References ( 41 )
Generate a list of	All references relating to this gene ( 41 )
List References by type	Research paper  ( 11 ) Supplementary material  ( 8 ) Review  ( 1 ) Personal communication to FlyBase  ( 9 ) FlyBase analysis  ( 6 ) Stock list  ( 1 ) DNA/RNA sequence record  ( 1 ) Protein sequence record  ( 1 ) Curated genome annotation  ( 2 ) Patent  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...