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Gene Dmel\CR41535

General Information
Symbol	Dmel\CR41535	Species	D. melanogaster
Name		Annotation symbol	CR41535
Feature type	rRNA_gene	FlyBase ID	FBgn0085795
Gene Model Status	Incomplete	Stock availability	None publicly available
Genomic Location
Chromosome (arm)	U	Recombination map
Cytogenetic map		Sequence location	U:8,853,389..8,854,056 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CR41535 (FBgn0085795). It is a rRNA_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has one annotated transcript. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely low expression to a trough of no expression detected. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: No FlyAtlas data available because no Affy2 ProbeSet aligns to an exon of CR41535. Comments on Affy2 ProbeSet: No relevant information because no Affy2 ProbeSet aligns to an exon of CR41535. Gene sequence location is U:8853389..8854056.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CR41535 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model incomplete due to fragmented genome assembly.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt)   CR41535-RA FBtr0114249  NR_004015   668
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence   Name
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0085795    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0085795 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely low expression to a trough of no expression detected. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0085795 expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    4 embryo 10-12hr    0 embryo 12-14hr    4 embryo 14-16hr    2 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    2 larva L3 12hr old    4 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    3 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    3 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    4 embryo 10-12hr    0 embryo 12-14hr    4 embryo 14-16hr    2 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    2 larva L3 12hr old    4 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    3 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    3 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    4 embryo 10-12hr    0 embryo 12-14hr    4 embryo 14-16hr    2 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    2 larva L3 12hr old    4 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    3 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    3 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    4 embryo 10-12hr    0 embryo 12-14hr    4 embryo 14-16hr    2 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    2 larva L3 12hr old    4 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    3 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    3 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    4 embryo 10-12hr    0 embryo 12-14hr    4 embryo 14-16hr    2 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    2 larva L3 12hr old    4 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    3 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    3 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0085795 expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    4 embryo 10-12hr    0 embryo 12-14hr    4 embryo 14-16hr    2 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    2 larva L3 12hr old    4 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    3 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    3 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    4 embryo 10-12hr    0 embryo 12-14hr    4 embryo 14-16hr    2 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    2 larva L3 12hr old    4 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    3 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    3 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    4 embryo 10-12hr    0 embryo 12-14hr    4 embryo 14-16hr    2 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    2 larva L3 12hr old    4 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    3 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    3 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    4 embryo 10-12hr    0 embryo 12-14hr    4 embryo 14-16hr    2 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    2 larva L3 12hr old    4 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    3 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    3 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    4 embryo 10-12hr    0 embryo 12-14hr    4 embryo 14-16hr    2 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    2 larva L3 12hr old    4 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    3 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    3 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
External Data & Images
Linkouts
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CR41535 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CR41535 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	non_protein_coding_gene (Drosophila Heterochromatin Genome Project, 2007) nuclear_gene (Drosophila Heterochromatin Genome Project, 2007) rRNA_gene (FlyBase Genome Annotators, 2010)
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CR41535 allele Gene References
External Data
Linkouts
Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 0 )
cDNA Clones ( 0 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts	GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 5740166
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	New annotation (CR41535) in release 5.2 of the genome annotation. (Drosophila Heterochromatin Genome Project, 2007)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NR_004015 Entrez Gene - A searchable database of RefSeq genes. • 5740166
Other Crossreferences
Linkouts
	FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0085795 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 5740166 modMine - Data generated by the modENCODE project. • FBgn0085795
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CR41535 (Drosophila Heterochromatin Genome Project, 2007, FlyBase Genome Annotators, 2010)
Name Synonym
Secondary FlyBase IDs
	FBan0041535
References ( 2 )
Personal communication to FlyBase	Drosophila Heterochromatin Genome Project, 2007, Release 5.2 of the annotated Drosophila melanogaster heterochromatin. Release 5.2 of the annotated Drosophila melanogaster heterochromatin. [FBrf0199188]
FlyBase analysis	FlyBase Genome Annotators, 2010, Changes affecting gene model number or type in release 5.28 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 5.28 of the annotated D.melanogaster genome. [FBrf0210498]