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Gene Dvir\RpL15

General Information
Symbol	Dvir\RpL15	Species	D. virilis
Name	Ribosomal protein L15	Annotation symbol	GJ22514
Feature type	protein_coding_gene	FlyBase ID	FBgn0085982
Gene Model Status	Current	Stock availability	None publicly available
Also Known As	RpL15
Genomic Location
Chromosome (arm)	scaffold_12736	Recombination map
Cytogenetic map		Sequence location	scaffold_12736:157,016..157,793 [+]
Genomic Maps	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Ribosomal protein L15 is referred to in FlyBase by the symbol Dvir\RpL15 (GJ22514, FBgn0085982). It is a protein_coding_gene from Drosophila virilis. An electronic pipeline based on InterPro domains suggests that it has the molecular function: structural constituent of ribosome. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: translation. No alleles are reported. It has one annotated transcript and one annotated polypeptide. Protein features are: Ribosomal protein L15e; Ribosomal protein L15e core domain; Ribosomal protein L15e, conserved site; Ribosomal protein L23/L15e core domain. Gene sequence location is scaffold_12736:157016..157793.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location
Experimentally Determined Cytological Location
Cytogenetic map Notes References   Maps to the distal heterochromatin on chromosome 2.   (Schulze et al., 2006)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dvir\RpL15 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Dvir\RpL15-RA FBtr0238439  XM_002060179   615   204
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Dvir\RpL15-PA   FBpp0236931   24.3   204   11.89     XP_002060215   EDW58212
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein L15e, conserved site (IPR020925) Ribosomal protein L15e (IPR000439) Ribosomal protein L23/L15e core domain (IPR012678) Ribosomal protein L15e core domain (IPR024794)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name DQ426900 ABD90549   DQ426903 ABD90552   CH940675 EDW58212
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q0ZIV1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
modENCODE Anatomy RNA-Seq
modENCODE Development RNA-Seq
modENCODE Cell Lines RNA-Seq
modENCODE Treatments RNA-Seq
Expression Clusters
External Data & Images
Linkouts
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Dvir\RpL15 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Dvir\RpL15 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
structural constituent of ribosome inferred from electronic annotation with InterPro:IPR000439, InterPro:IPR012678, InterPro:IPR020925, InterPro:IPR024794 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
translation inferred from electronic annotation with InterPro:IPR000439, InterPro:IPR012678, InterPro:IPR020925 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
ribosome inferred from electronic annotation with InterPro:IPR000439, InterPro:IPR012678, InterPro:IPR020925, InterPro:IPR024794 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene (Drosophila 12 Genomes Consortium, 2008) protein_coding_gene (Schulze et al., 2006, Schulze, 2006.3.2, Drosophila 12 Genomes Consortium, 2008)
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Dvir\RpL15 allele Gene References
External Data
Linkouts
Orthologs
OrthoDB Orthologs (1) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6KH3FG Dipteran inclusive ortholog search EOG69W2QM Insect inclusive ortholog search EOG64B8ZM Arthropod inclusive ortholog search EOG63XSKV Metazoa inclusive ortholog search EOG6J74KJ
Ortholog(s) in Drosophila melanogaster (EOG6KH3FG)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\RpL15
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 0 )
cDNA Clones ( 0 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • XM_002060179 RefSeq (Proteins) • XP_002060215 DDBJ / EMBL / GenBank • ABD90549 ABD90552 DQ426900 DQ426903 EDW58212 Entrez Gene - A searchable database of RefSeq genes. • 6636757 UniProtKB/TrEMBL • Q0ZIV1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein L15e, conserved site (IPR020925) Ribosomal protein L15e (IPR000439) Ribosomal protein L23/L15e core domain (IPR012678) Ribosomal protein L15e core domain (IPR024794)
Linkouts
	FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0085982
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	dvir_GLEANR_7857 (Drosophila 12 Genomes Consortium, 2008) Dvir\RpL15 (Drosophila 12 Genomes Consortium, 2008) DvRpL15 (Schulze et al., 2006) RpL15 (Schaeffer et al., 2008, Drosophila 12 Genomes Consortium, 2008)
Name Synonym	Ribosomal protein L15
Secondary FlyBase IDs
References ( 8 )
Research paper	Schaeffer et al., 2008, Genetics 179(3): 1601--1655 Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps. [FBrf0205698] Drosophila 12 Genomes Consortium et al., 2007, Nature 450(7167): 203--218 Evolution of genes and genomes on the Drosophila phylogeny. [FBrf0200326] Schulze et al., 2006, Genetics 173(3): 1433--1445 Heterochromatic genes in Drosophila: A comparative analysis of two genes. [FBrf0195052]
Personal communication to FlyBase	Drosophila 12 Genomes Consortium, 2008, personal communication to FlyBase Symbols and class of gene information for the GLEANR consensus sequences of the 11 sequenced non-melanogaster Drosophila species (Drosophila ananassae, erecta, grimshawi, mojavensis, persimilis, pseudoobscura, sechellia, simulans, willistoni, virilis and yakuba). [FBrf0202436] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
FlyBase analysis	FlyBase, 2008, Newly sequenced Drosophila genomes: associations of GLEANR gene predictions (Releases 1.0) with previously known genes in FlyBase. Newly sequenced Drosophila genomes: associations of GLEANR gene predictions (Releases 1.0) with previously known genes in FlyBase. [FBrf0202439]
DNA/RNA sequence record	Schulze, 2006.3.2, GenBank/EMBL/DDBJ: DQ426900 Drosophila virilis ribosomal protein large subunit 15 (RpL15) gene, complete cds. [FBrf0199344] Schulze, 2006.3.3, GenBank/EMBL/DDBJ: DQ426903 Drosophila virilis ribosomal protein large subunit 15 mRNA, complete cds. [FBrf0199347]