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Gene Dmel\psd

General Information
Symbol	Dmel\psd	Species	D. melanogaster
Name	palisade	Annotation symbol	CG9050
Feature type	protein_coding_gene	FlyBase ID	FBgn0086265
Gene Model Status	Current	Stock availability	None publicly available
Also Known As	TU-1
Genomic Location
Chromosome (arm)	2L	Recombination map	2-[20]
Cytogenetic map	26A4-26A4	Sequence location	2L:5,963,087..5,964,322 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene palisade is referred to in FlyBase by the symbol Dmel\psd (CG9050, FBgn0086265). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: vitelline membrane formation involved in chorion-containing eggshell formation; follicle cell microvillus organization. 3 alleles are reported. The phenotype of these alleles is annotated with: vitelline membrane. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of no expression detected. Peak expression observed in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1639805_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of psd. Gene sequence location is 2L:5963087..5964322.
External Summaries
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01	References Antosh et al., 2011, Aging 3(6): 576--583 Sequence features HFA03131 BKN30044
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 26A4-26A4   Limits computationally determined from genome sequence between P{EP}bchsEP2299&P{EP}GpdhEP466 and P{lacW}chick13321
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location	2-[20]
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\psd for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) psd-RA FBtr0079238  NM_135130   1236   381
Additional Transcript Data & Comments
Reported size (kB)	1.4 (northern blot) (Popodi et al., 1988)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein psd-PA   FBpp0078868   40.5   381   4.32     NP_608974   AAF52311
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAF52311   BI355790   BT001468 AAN71223
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VMK3 Q8IH21
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
northern blot Stage Tissue/Position (including subcellular localization) Reference adult stageoogenesis stage S8 -- S10B   oocyte | posterior   (Popodi et al., 1988)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0086265    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0086265 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of no expression detected. Peak expression observed in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0086265 expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    8 embryo 04-06hr    14 embryo 06-08hr    9 embryo 08-10hr    16 embryo 10-12hr    14 embryo 12-14hr    18 embryo 14-16hr    24 embryo 16-18hr    12 embryo 18-20hr    16 embryo 20-22hr    4 embryo 22-24hr    2 larva L1    0 larva L2    1 larva L3 12hr old    0 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    72 white prepupae new    128 white prepupae 12hr    123 white prepupae 24hr    31 pupae 2d postWPP    46 pupae 3d postWPP    20 pupae 4d postWPP    32 adult male 01day    11 adult male 05day    5 adult male 30day    5 adult female 01day    3459 adult female 05day    10862 adult female 30day    10115 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    8 embryo 04-06hr    14 embryo 06-08hr    9 embryo 08-10hr    16 embryo 10-12hr    14 embryo 12-14hr    18 embryo 14-16hr    24 embryo 16-18hr    12 embryo 18-20hr    16 embryo 20-22hr    4 embryo 22-24hr    2 larva L1    0 larva L2    1 larva L3 12hr old    0 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    72 white prepupae new  (128) white prepupae 12hr  (123) white prepupae 24hr    31 pupae 2d postWPP    46 pupae 3d postWPP    20 pupae 4d postWPP    32 adult male 01day    11 adult male 05day    5 adult male 30day    5 adult female 01day  (3459) adult female 05day  (10862) adult female 30day  (10115) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    8 embryo 04-06hr    14 embryo 06-08hr    9 embryo 08-10hr    16 embryo 10-12hr    14 embryo 12-14hr    18 embryo 14-16hr    24 embryo 16-18hr    12 embryo 18-20hr    16 embryo 20-22hr    4 embryo 22-24hr    2 larva L1    0 larva L2    1 larva L3 12hr old    0 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    72 white prepupae new    128 white prepupae 12hr    123 white prepupae 24hr    31 pupae 2d postWPP    46 pupae 3d postWPP    20 pupae 4d postWPP    32 adult male 01day    11 adult male 05day    5 adult male 30day    5 adult female 01day  (3459) adult female 05day  (10862) adult female 30day  (10115) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    8 embryo 04-06hr    14 embryo 06-08hr    9 embryo 08-10hr    16 embryo 10-12hr    14 embryo 12-14hr    18 embryo 14-16hr    24 embryo 16-18hr    12 embryo 18-20hr    16 embryo 20-22hr    4 embryo 22-24hr    2 larva L1    0 larva L2    1 larva L3 12hr old    0 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    72 white prepupae new    128 white prepupae 12hr    123 white prepupae 24hr    31 pupae 2d postWPP    46 pupae 3d postWPP    20 pupae 4d postWPP    32 adult male 01day    11 adult male 05day    5 adult male 30day    5 adult female 01day    3459 adult female 05day  (10862) adult female 30day  10115 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    8 embryo 04-06hr    14 embryo 06-08hr    9 embryo 08-10hr    16 embryo 10-12hr    14 embryo 12-14hr    18 embryo 14-16hr    24 embryo 16-18hr    12 embryo 18-20hr    16 embryo 20-22hr    4 embryo 22-24hr    2 larva L1    0 larva L2    1 larva L3 12hr old    0 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    72 white prepupae new    128 white prepupae 12hr    123 white prepupae 24hr    31 pupae 2d postWPP    46 pupae 3d postWPP    20 pupae 4d postWPP    32 adult male 01day    11 adult male 05day    5 adult male 30day    5 adult female 01day    3459 adult female 05day    10862 adult female 30day    10115 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0086265 expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    8 embryo 04-06hr    14 embryo 06-08hr    9 embryo 08-10hr    16 embryo 10-12hr    14 embryo 12-14hr    18 embryo 14-16hr    24 embryo 16-18hr    12 embryo 18-20hr    16 embryo 20-22hr    4 embryo 22-24hr    2 larva L1    0 larva L2    1 larva L3 12hr old    0 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    72 white prepupae new    128 white prepupae 12hr    123 white prepupae 24hr    31 pupae 2d postWPP    46 pupae 3d postWPP    20 pupae 4d postWPP    32 adult male 01day    11 adult male 05day    5 adult male 30day    5 adult female 01day    3459 adult female 05day    10862 adult female 30day    10115 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    8 embryo 04-06hr    14 embryo 06-08hr    9 embryo 08-10hr    16 embryo 10-12hr    14 embryo 12-14hr    18 embryo 14-16hr    24 embryo 16-18hr    12 embryo 18-20hr    16 embryo 20-22hr    4 embryo 22-24hr    2 larva L1    0 larva L2    1 larva L3 12hr old    0 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    72 white prepupae new  128 white prepupae 12hr  123 white prepupae 24hr    31 pupae 2d postWPP    46 pupae 3d postWPP    20 pupae 4d postWPP    32 adult male 01day    11 adult male 05day    5 adult male 30day    5 adult female 01day  (3459) adult female 05day  (10862) adult female 30day  (10115) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    8 embryo 04-06hr    14 embryo 06-08hr    9 embryo 08-10hr    16 embryo 10-12hr    14 embryo 12-14hr    18 embryo 14-16hr    24 embryo 16-18hr    12 embryo 18-20hr    16 embryo 20-22hr    4 embryo 22-24hr    2 larva L1    0 larva L2    1 larva L3 12hr old    0 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    72 white prepupae new    128 white prepupae 12hr    123 white prepupae 24hr    31 pupae 2d postWPP    46 pupae 3d postWPP    20 pupae 4d postWPP    32 adult male 01day    11 adult male 05day    5 adult male 30day    5 adult female 01day  (3459) adult female 05day  (10862) adult female 30day  (10115) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    8 embryo 04-06hr    14 embryo 06-08hr    9 embryo 08-10hr    16 embryo 10-12hr    14 embryo 12-14hr    18 embryo 14-16hr    24 embryo 16-18hr    12 embryo 18-20hr    16 embryo 20-22hr    4 embryo 22-24hr    2 larva L1    0 larva L2    1 larva L3 12hr old    0 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    72 white prepupae new    128 white prepupae 12hr    123 white prepupae 24hr    31 pupae 2d postWPP    46 pupae 3d postWPP    20 pupae 4d postWPP    32 adult male 01day    11 adult male 05day    5 adult male 30day    5 adult female 01day    3459 adult female 05day  10862 adult female 30day  10115 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    8 embryo 04-06hr    14 embryo 06-08hr    9 embryo 08-10hr    16 embryo 10-12hr    14 embryo 12-14hr    18 embryo 14-16hr    24 embryo 16-18hr    12 embryo 18-20hr    16 embryo 20-22hr    4 embryo 22-24hr    2 larva L1    0 larva L2    1 larva L3 12hr old    0 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    72 white prepupae new    128 white prepupae 12hr    123 white prepupae 24hr    31 pupae 2d postWPP    46 pupae 3d postWPP    20 pupae 4d postWPP    32 adult male 01day    11 adult male 05day    5 adult male 30day    5 adult female 01day    3459 adult female 05day    10862 adult female 30day    10115 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0086265    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0086265 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0086265 expression level Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body    6.9 Larval Salivary Gland no informative data Larval Trachea    9.9 Larval Carcass    8.2 Adult Head    4.9 Adult Eye    1.9 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    8.5 Adult Crop    9.3 Adult Midgut no informative data Adult Hindgut    7.9 Adult Malpighian Tubules    9.1 Adult Fat Body    9.3 Adult Salivary Gland no informative data Adult Heart    1.9 Adult VirginFemale Spermatheca    7.4 Adult InseminatedFemale Spermatheca    6.2 Adult Ovary    347.9 Adult Testis    8.3 Adult Male Accessory Gland    5.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body    6.9 Larval Salivary Gland no informative data Larval Trachea    9.9 Larval Carcass    8.2 Adult Head    4.9 Adult Eye    1.9 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    8.5 Adult Crop    9.3 Adult Midgut no informative data Adult Hindgut    7.9 Adult Malpighian Tubules    9.1 Adult Fat Body    9.3 Adult Salivary Gland no informative data Adult Heart    1.9 Adult VirginFemale Spermatheca    7.4 Adult InseminatedFemale Spermatheca    6.2 Adult Ovary    347.9 Adult Testis    8.3 Adult Male Accessory Gland    5.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body    6.9 Larval Salivary Gland no informative data Larval Trachea    9.9 Larval Carcass    8.2 Adult Head    4.9 Adult Eye    1.9 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    8.5 Adult Crop    9.3 Adult Midgut no informative data Adult Hindgut    7.9 Adult Malpighian Tubules    9.1 Adult Fat Body    9.3 Adult Salivary Gland no informative data Adult Heart    1.9 Adult VirginFemale Spermatheca    7.4 Adult InseminatedFemale Spermatheca    6.2 Adult Ovary    347.9 Adult Testis    8.3 Adult Male Accessory Gland    5.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body    6.9 Larval Salivary Gland no informative data Larval Trachea    9.9 Larval Carcass    8.2 Adult Head    4.9 Adult Eye    1.9 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    8.5 Adult Crop    9.3 Adult Midgut no informative data Adult Hindgut    7.9 Adult Malpighian Tubules    9.1 Adult Fat Body    9.3 Adult Salivary Gland no informative data Adult Heart    1.9 Adult VirginFemale Spermatheca    7.4 Adult InseminatedFemale Spermatheca    6.2 Adult Ovary    347.9 Adult Testis    8.3 Adult Male Accessory Gland    5.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0086265 expression level Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body    6.9 Larval Salivary Gland no informative data Larval Trachea    9.9 Larval Carcass    8.2 Adult Head    4.9 Adult Eye    1.9 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    8.5 Adult Crop    9.3 Adult Midgut no informative data Adult Hindgut    7.9 Adult Malpighian Tubules    9.1 Adult Fat Body    9.3 Adult Salivary Gland no informative data Adult Heart    1.9 Adult VirginFemale Spermatheca    7.4 Adult InseminatedFemale Spermatheca    6.2 Adult Ovary    347.9 Adult Testis    8.3 Adult Male Accessory Gland    5.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body    6.9 Larval Salivary Gland no informative data Larval Trachea    9.9 Larval Carcass    8.2 Adult Head    4.9 Adult Eye    1.9 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    8.5 Adult Crop    9.3 Adult Midgut no informative data Adult Hindgut    7.9 Adult Malpighian Tubules    9.1 Adult Fat Body    9.3 Adult Salivary Gland no informative data Adult Heart    1.9 Adult VirginFemale Spermatheca    7.4 Adult InseminatedFemale Spermatheca    6.2 Adult Ovary    347.9 Adult Testis    8.3 Adult Male Accessory Gland    5.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body    6.9 Larval Salivary Gland no informative data Larval Trachea    9.9 Larval Carcass    8.2 Adult Head    4.9 Adult Eye    1.9 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    8.5 Adult Crop    9.3 Adult Midgut no informative data Adult Hindgut    7.9 Adult Malpighian Tubules    9.1 Adult Fat Body    9.3 Adult Salivary Gland no informative data Adult Heart    1.9 Adult VirginFemale Spermatheca    7.4 Adult InseminatedFemale Spermatheca    6.2 Adult Ovary    347.9 Adult Testis    8.3 Adult Male Accessory Gland    5.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body    6.9 Larval Salivary Gland no informative data Larval Trachea    9.9 Larval Carcass    8.2 Adult Head    4.9 Adult Eye    1.9 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    8.5 Adult Crop    9.3 Adult Midgut no informative data Adult Hindgut    7.9 Adult Malpighian Tubules    9.1 Adult Fat Body    9.3 Adult Salivary Gland no informative data Adult Heart    1.9 Adult VirginFemale Spermatheca    7.4 Adult InseminatedFemale Spermatheca    6.2 Adult Ovary    347.9 Adult Testis    8.3 Adult Male Accessory Gland    5.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body     Larval Salivary Gland no informative data Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut no informative data Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland no informative data Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass no informative data FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    4.9   NA  Eye    1.9   NA  Brain    6.1   7.025  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    8.5   NA  Crop    9.3   no informative data  Midgut    no informative data   no informative data  Hindgut    7.9   no informative data  Malpighian Tubules    9.1   6.9  Fat Body    9.3   no informative data  Salivary Gland    no informative data   NA  Heart    1.9   9.9  Trachea    NA   NA  VirginFemale Spermatheca    7.4   NA  InseminatedFemale Spermatheca    6.2   NA  Ovary    347.9   NA  Testis    8.3   NA  Male Accessory Gland    5.5   8.2  Carcass    no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_00
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0086265 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9050-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | embryonic stage, with Scer\GAL4Act5C.PI psddsRNA.Scer\UAS lethal | embryonic stage, with Scer\GAL4dm-PG45 psddsRNA.Scer\UAS Sterility Allele female sterile (with Df(2L)Exel7024) psdMF56 psdMF104 female sterile | recessive psdMF56 psdMF104 Phenotype manifest in Allele cortical actin cytoskeleton & oocyte, with Scer\GAL4dm-PG45 psddsRNA.Scer\UAS microvillus & follicle cell psdMF56 microvillus & follicle cell, with Scer\GAL4dm-PG45 psddsRNA.Scer\UAS vitelline membrane, with Scer\GAL4dm-PG45 psddsRNA.Scer\UAS
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of psd Class Mutagen Stocks Known lesion psdMF104 recombination FLPase SCEI endonuclease 0 Yes psdMF56 recombination FLPase SCEI endonuclease 0 Yes
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of psd Class Mutagen Stocks Known lesion psddsRNA.Scer\UAS in vitro construct - regulatory fusion in vitro construct - RNAi 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel7024 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{UAS-psd.RNAi} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 4 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
follicle cell microvillus organization inferred from mutant phenotype (Elalayli et al., 2008) vitelline membrane formation involved in chorion-containing eggshell formation inferred from mutant phenotype (Elalayli et al., 2008)
Cellular Component
CV term Evidence References
chorion inferred from direct assay (Fakhouri et al., 2006) vitelline envelope inferred from direct assay (Elalayli et al., 2008)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	gene   nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions psd allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 59995 DroID - A comprehensive database of gene and protein interactions. • FBgn0086265 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33830
Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs	Dpse\GA21504
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0236335 FBgn0194019 FBgn0172888 FBgn0246727 FBgn0156698 FBgn0116400
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 1 )
	BACR48E14 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 1 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM32356
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0086265 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33830 5656882
Antibody Information
	polyclonal (Elalayli et al., 2008)
Other Information
Discoverer
Etymology
	The gene is named "palisade" because its mutation results in disruption of the palisade-like arrangement of vitelline bodies and follicle cell microvilli within the perivitelline space during vitelline membrane secretion. (Elalayli et al., 2008)
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: psd Fcp26Aa (Elalayli et al., 2008)
Source for database merge of	Source for merge of: CG9050 BcDNA:GM32356 (FlyBase, 1996-) Source for merge of: Fcp26Aa CG9050 (Fakhouri et al., 2006)
Additional comments	Source for merge of CG9050 BcDNA:GM32356 was a shared cDNA (date:030728). (FlyBase, 1996-)
Other Comments
	The organisation and expression of follicle cell genes found in a cluster at 26A has been investigated. (Popodi et al., 1988)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_135130 RefSeq (Proteins) • NP_608974 DDBJ / EMBL / GenBank • AAF52311 AAN71223 BI355790 BT001468 Entrez Gene - A searchable database of RefSeq genes. • 33830 UniProtKB/TrEMBL • Q8IH21 Q9VMK3
Other Crossreferences
Linkouts
	BioGRID - A database of protein and genetic interactions • 59995 DroID - A comprehensive database of gene and protein interactions. • FBgn0086265 DRSC - Results from RNAi screens. • FBgn0086265 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0086265 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9050-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0086265 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33830 5656882 Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution • /genebrief/fcp26aa_palisade.htm InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33830 modMine - Data generated by the modENCODE project. • FBgn0086265 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0236335 FBgn0194019 FBgn0172888 FBgn0246727 FBgn0156698 FBgn0116400
Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym	BcDNA:GM32356   CG9050 (Fakhouri et al., 2006, McGraw et al., 2008, Elalayli et al., 2008) Fcp26Aa (Zhang et al., 2009) psd (Elalayli et al., 2008) TU-1 (Fakhouri et al., 2006, Popodi et al., 1988)
Name Synonym	CG9050   Follicle cell protein 26Aa   Palisade (Zhang et al., 2009) palisade (Elalayli et al., 2008)
Secondary FlyBase IDs
	FBgn0000646 FBgn0031755 FBgn0064929
References ( 13 )
Research paper	Antosh et al., 2011, Aging 3(6): 576--583 New comparative genomics approach reveals a conserved health span signature across species. [FBrf0216594] Zhang et al., 2009, Curr. Biol. 19(14): 1200--1205 Sulfation of eggshell components by Pipe defines dorsal-ventral polarity in the Drosophila embryo. [FBrf0208501] Elalayli et al., 2008, Dev. Biol. 319(2): 359--369 Palisade is required in the Drosophila ovary for assembly and function of the protective vitelline membrane. [FBrf0209279] McGraw et al., 2008, Genetics 179(3): 1395--1408 Post-mating gene expression profiles of female Drosophila melanogaster in response to time and to four male accessory gland proteins. [FBrf0207105] Fakhouri et al., 2006, Dev. Biol. 293(1): 127--141 Minor proteins and enzymes of the Drosophila eggshell matrix. [FBrf0190117] Cooley et al., 1992, Cell 69(1): 173--184 chickadee encodes a profilin required for intercellular cytoplasm transport during Drosophila oogenesis. [FBrf0055547] Popodi et al., 1988, Dev. Biol. 127: 248--256 Organization and expression of a second chromosome follicle cell gene cluster in Drosophila. [FBrf0047822]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]