General Information Symbol Dmel\ Ubi-p5ESpecies D. melanogaster Name Ubiquitin-5E Annotation symbol CG32744 Feature type protein_coding_gene FlyBase ID FBgn0086558 Gene Model Status Current Stock availability 2 publicly
available Also Known As CG18282, Ub Genomic Location Chromosome (arm) X Recombination map 1- Cytogenetic map 5E4-5E4 Sequence location X:6,171,010..6,173,307 [-]
Genomic Maps
Summary Information Automatically generated summary
See sections below for more information The gene
Ubiquitin-5E is referred to in FlyBase by the symbol
Dmel\Ubi-p5E (CG32744, FBgn0086558). It is a protein_coding_gene from
Drosophila melanogaster . Its
molecular function is unknown. Based on sequence similarity, it is predicted to be involved in the
biological process : ubiquitin-dependent protein catabolic process; cellular protein modification process.
3 alleles are reported . No phenotypic data is available. It has
one annotated transcript and
one annotated polypeptide .
Protein features are: Ubiquitin; Ubiquitin conserved site; Ubiquitin subgroup; Ubiquitin supergroup. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed during late larval stages, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1630005_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Ubi-p5E. Gene sequence location is
X:6171010..6173307 .
User Contributed Data
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Detailed Mapping Data
FlyBase Computed Cytological Location
Experimentally Determined Cytological Location
Hybridization of a polyubiquitin probe to 5E is seen in Canton-S but not in the Vallecas stock.
Experimentally Determined Recombination Data
Location Left of (cM) Right of (cM) Notes Gene Model & Products Comments on Gene
Model Gene model reviewed during 5.50
Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data Annotated Transcripts Additional Transcript Data
& Comments Reported size (kB) Comments External Data Crossreferences
Polypeptide Data Annotated
Polypeptides Additional Polypeptide
Data & Comments Reported size (kDa) Comments External Data Linkouts Crossreferences
domains - A database of protein families, domains, and functional sites
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank UniProtKB/Swiss-Prot UniProtKB/TrEMBL Mapped Features Mapped Features have been reorganized, please
see this article for details. Additional mapped features and mutations can
be found on GBrowse or related reports. External Data Linkouts Crossreferences Expression Data Transcript Expression
Additional Descriptive Data
Marker for Subcellular Localization CV Term Polypeptide Expression
Additional Descriptive Data
Marker for Subcellular Localization (GO Cellular Component) inferred from direct assay
inferred from direct assay
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference
FlyAtlas Anatomy Microarray
Linear, scaled to maximum expression level
Tissue
Expression Level
Larval Central Nervous System
982.75
Larval Midgut
2881
Larval Hindgut
2223
Larval Malpighian Tubules
3043.3
Larval Fat Body
2473.1
Larval Salivary Gland
663.6
Larval Trachea
894.25
Larval Carcass
1704.2
Adult Head
1739.1
Adult Eye
1692.95
Adult Brain
1805.5
Adult Thoracic-Abdominal Ganglion
1795.8
Adult Crop
1496.5
Adult Midgut
1895
Adult Hindgut
2066
Adult Malpighian Tubules
2826
Adult Fat Body
3159.1
Adult Salivary Gland
1123.6
Adult Heart
2760.025
Adult VirginFemale Spermatheca
3139.2
Adult InseminatedFemale Spermatheca
2628.1
Adult Ovary
1456.2
Adult Testis
625.9
Adult Male Accessory Gland
1404.3
Adult Carcass
1941.1
Expression Level Scale
None
Low
Moderate
High
Very high
Linear, scaled to Moderate expression
Tissue
Expression Level
Larval Central Nervous System
(982.75)
Larval Midgut
(2881)
Larval Hindgut
(2223)
Larval Malpighian Tubules
(3043.3)
Larval Fat Body
(2473.1)
Larval Salivary Gland
(663.6)
Larval Trachea
(894.25)
Larval Carcass
(1704.2)
Adult Head
(1739.1)
Adult Eye
(1692.95)
Adult Brain
(1805.5)
Adult Thoracic-Abdominal Ganglion
(1795.8)
Adult Crop
(1496.5)
Adult Midgut
(1895)
Adult Hindgut
(2066)
Adult Malpighian Tubules
(2826)
Adult Fat Body
(3159.1)
Adult Salivary Gland
(1123.6)
Adult Heart
(2760.025)
Adult VirginFemale Spermatheca
(3139.2)
Adult InseminatedFemale Spermatheca
(2628.1)
Adult Ovary
(1456.2)
Adult Testis
(625.9)
Adult Male Accessory Gland
(1404.3)
Adult Carcass
(1941.1)
Expression Level Scale
None
Low
Moderate
High
Linear, scaled to High level expression
Tissue
Expression Level
Larval Central Nervous System
982.75
Larval Midgut
(2881)
Larval Hindgut
(2223)
Larval Malpighian Tubules
(3043.3)
Larval Fat Body
(2473.1)
Larval Salivary Gland
663.6
Larval Trachea
894.25
Larval Carcass
(1704.2)
Adult Head
(1739.1)
Adult Eye
(1692.95)
Adult Brain
(1805.5)
Adult Thoracic-Abdominal Ganglion
(1795.8)
Adult Crop
(1496.5)
Adult Midgut
(1895)
Adult Hindgut
(2066)
Adult Malpighian Tubules
(2826)
Adult Fat Body
(3159.1)
Adult Salivary Gland
(1123.6)
Adult Heart
(2760.025)
Adult VirginFemale Spermatheca
(3139.2)
Adult InseminatedFemale Spermatheca
(2628.1)
Adult Ovary
(1456.2)
Adult Testis
625.9
Adult Male Accessory Gland
(1404.3)
Adult Carcass
(1941.1)
Expression Level Scale
None
Low
Moderate
High
Very high
Linear, scaled to Very high expression
Tissue
Expression Level
Larval Central Nervous System
982.75
Larval Midgut
2881
Larval Hindgut
2223
Larval Malpighian Tubules
3043.3
Larval Fat Body
2473.1
Larval Salivary Gland
663.6
Larval Trachea
894.25
Larval Carcass
1704.2
Adult Head
1739.1
Adult Eye
1692.95
Adult Brain
1805.5
Adult Thoracic-Abdominal Ganglion
1795.8
Adult Crop
1496.5
Adult Midgut
1895
Adult Hindgut
2066
Adult Malpighian Tubules
2826
Adult Fat Body
3159.1
Adult Salivary Gland
1123.6
Adult Heart
2760.025
Adult VirginFemale Spermatheca
3139.2
Adult InseminatedFemale Spermatheca
2628.1
Adult Ovary
1456.2
Adult Testis
625.9
Adult Male Accessory Gland
1404.3
Adult Carcass
1941.1
Expression Level Scale
Very high
log, scaled to maximum expression level
Tissue
Expression Level
Larval Central Nervous System
982.75
Larval Midgut
2881
Larval Hindgut
2223
Larval Malpighian Tubules
3043.3
Larval Fat Body
2473.1
Larval Salivary Gland
663.6
Larval Trachea
894.25
Larval Carcass
1704.2
Adult Head
1739.1
Adult Eye
1692.95
Adult Brain
1805.5
Adult Thoracic-Abdominal Ganglion
1795.8
Adult Crop
1496.5
Adult Midgut
1895
Adult Hindgut
2066
Adult Malpighian Tubules
2826
Adult Fat Body
3159.1
Adult Salivary Gland
1123.6
Adult Heart
2760.025
Adult VirginFemale Spermatheca
3139.2
Adult InseminatedFemale Spermatheca
2628.1
Adult Ovary
1456.2
Adult Testis
625.9
Adult Male Accessory Gland
1404.3
Adult Carcass
1941.1
Expression Level Scale
None
Low
Moderate
High
Very high
log, scaled to Moderate expression
Tissue
Expression Level
Larval Central Nervous System
(982.75)
Larval Midgut
(2881)
Larval Hindgut
(2223)
Larval Malpighian Tubules
(3043.3)
Larval Fat Body
(2473.1)
Larval Salivary Gland
663.6
Larval Trachea
(894.25)
Larval Carcass
(1704.2)
Adult Head
(1739.1)
Adult Eye
(1692.95)
Adult Brain
(1805.5)
Adult Thoracic-Abdominal Ganglion
(1795.8)
Adult Crop
(1496.5)
Adult Midgut
(1895)
Adult Hindgut
(2066)
Adult Malpighian Tubules
(2826)
Adult Fat Body
(3159.1)
Adult Salivary Gland
(1123.6)
Adult Heart
(2760.025)
Adult VirginFemale Spermatheca
(3139.2)
Adult InseminatedFemale Spermatheca
(2628.1)
Adult Ovary
(1456.2)
Adult Testis
625.9
Adult Male Accessory Gland
(1404.3)
Adult Carcass
(1941.1)
Expression Level Scale
None
Low
Moderate
High
log, scaled to High level expression
Tissue
Expression Level
Larval Central Nervous System
982.75
Larval Midgut
(2881)
Larval Hindgut
(2223)
Larval Malpighian Tubules
(3043.3)
Larval Fat Body
(2473.1)
Larval Salivary Gland
663.6
Larval Trachea
894.25
Larval Carcass
1704.2
Adult Head
(1739.1)
Adult Eye
1692.95
Adult Brain
(1805.5)
Adult Thoracic-Abdominal Ganglion
(1795.8)
Adult Crop
1496.5
Adult Midgut
(1895)
Adult Hindgut
(2066)
Adult Malpighian Tubules
(2826)
Adult Fat Body
(3159.1)
Adult Salivary Gland
1123.6
Adult Heart
(2760.025)
Adult VirginFemale Spermatheca
(3139.2)
Adult InseminatedFemale Spermatheca
(2628.1)
Adult Ovary
1456.2
Adult Testis
625.9
Adult Male Accessory Gland
1404.3
Adult Carcass
(1941.1)
Expression Level Scale
None
Low
Moderate
High
Very high
log, scaled to Very high expression
Tissue
Expression Level
Larval Central Nervous System
982.75
Larval Midgut
2881
Larval Hindgut
2223
Larval Malpighian Tubules
3043.3
Larval Fat Body
2473.1
Larval Salivary Gland
663.6
Larval Trachea
894.25
Larval Carcass
1704.2
Adult Head
1739.1
Adult Eye
1692.95
Adult Brain
1805.5
Adult Thoracic-Abdominal Ganglion
1795.8
Adult Crop
1496.5
Adult Midgut
1895
Adult Hindgut
2066
Adult Malpighian Tubules
2826
Adult Fat Body
3159.1
Adult Salivary Gland
1123.6
Adult Heart
2760.025
Adult VirginFemale Spermatheca
3139.2
Adult InseminatedFemale Spermatheca
2628.1
Adult Ovary
1456.2
Adult Testis
625.9
Adult Male Accessory Gland
1404.3
Adult Carcass
1941.1
Expression Level Scale
None
Low
Moderate
High
Very high
Heatmap
Tissue
Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass
FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level
Tissue
Adult Expression Level
NA
Head
1739.1
NA
Eye
1692.95
NA
Brain
1805.5
982.75
Central Nervous System
NA
NA
Thoracic-Abdominal Ganglion
1795.8
NA
Crop
1496.5
2881
Midgut
1895
2223
Hindgut
2066
3043.3
Malpighian Tubules
2826
2473.1
Fat Body
3159.1
663.6
Salivary Gland
1123.6
NA
Heart
2760.025
894.25
Trachea
NA
NA
VirginFemale Spermatheca
3139.2
NA
InseminatedFemale Spermatheca
2628.1
NA
Ovary
1456.2
NA
Testis
625.9
NA
Male Accessory Gland
1404.3
1704.2
Carcass
1941.1
modENCODE Anatomy RNA-Seq
Linear, scaled to maximum expression level
Tissue
Expression Level
imaginal disc, larvae L3 wandering
85
central nervous system, larvae L3
69
central nervous system, pupae P8
97
head, virgin 1-day female
67
head, virgin 4-day female
70
head, virgin 20-day female
113
head, mated 1-day female
57
head, mated 4-day female
54
head, mated 20-day female
77
head, mated 1-day male
104
head, mated 4-day male
85
head, mated 20-day male
132
salivary gland, larvae L3 wandering
14
salivary gland, white prepupae
24
digestive system, larvae L3 wandering
599
digestive system, 1-day adult
132
digestive system, 4-day adult
95
digestive system, 20-day adult
122
fat body, larvae L3 wandering
45
fat body, white prepupae
91
fat body, pupae P8
87
carcass, larvae L3 wandering
250
carcass, 1-day adult
54
carcass, 4-day adult
67
carcass, 20-day adult
109
ovary, virgin 4-day female
168
ovary, mated 4-day female
125
testis, mated 4-day male
81
accessory gland, mated 4-day male
60
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Moderate expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
(85)
central nervous system, larvae L3
(69)
central nervous system, pupae P8
(97)
head, virgin 1-day female
(67)
head, virgin 4-day female
(70)
head, virgin 20-day female
(113)
head, mated 1-day female
(57)
head, mated 4-day female
(54)
head, mated 20-day female
(77)
head, mated 1-day male
(104)
head, mated 4-day male
(85)
head, mated 20-day male
(132)
salivary gland, larvae L3 wandering
14
salivary gland, white prepupae
24
digestive system, larvae L3 wandering
(599)
digestive system, 1-day adult
(132)
digestive system, 4-day adult
(95)
digestive system, 20-day adult
(122)
fat body, larvae L3 wandering
(45)
fat body, white prepupae
(91)
fat body, pupae P8
(87)
carcass, larvae L3 wandering
(250)
carcass, 1-day adult
(54)
carcass, 4-day adult
(67)
carcass, 20-day adult
(109)
ovary, virgin 4-day female
(168)
ovary, mated 4-day female
(125)
testis, mated 4-day male
(81)
accessory gland, mated 4-day male
(60)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
85
central nervous system, larvae L3
69
central nervous system, pupae P8
97
head, virgin 1-day female
67
head, virgin 4-day female
70
head, virgin 20-day female
(113)
head, mated 1-day female
57
head, mated 4-day female
54
head, mated 20-day female
77
head, mated 1-day male
104
head, mated 4-day male
85
head, mated 20-day male
(132)
salivary gland, larvae L3 wandering
14
salivary gland, white prepupae
24
digestive system, larvae L3 wandering
(599)
digestive system, 1-day adult
(132)
digestive system, 4-day adult
95
digestive system, 20-day adult
(122)
fat body, larvae L3 wandering
45
fat body, white prepupae
91
fat body, pupae P8
87
carcass, larvae L3 wandering
(250)
carcass, 1-day adult
54
carcass, 4-day adult
67
carcass, 20-day adult
(109)
ovary, virgin 4-day female
(168)
ovary, mated 4-day female
(125)
testis, mated 4-day male
81
accessory gland, mated 4-day male
60
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
85
central nervous system, larvae L3
69
central nervous system, pupae P8
97
head, virgin 1-day female
67
head, virgin 4-day female
70
head, virgin 20-day female
113
head, mated 1-day female
57
head, mated 4-day female
54
head, mated 20-day female
77
head, mated 1-day male
104
head, mated 4-day male
85
head, mated 20-day male
132
salivary gland, larvae L3 wandering
14
salivary gland, white prepupae
24
digestive system, larvae L3 wandering
599
digestive system, 1-day adult
132
digestive system, 4-day adult
95
digestive system, 20-day adult
122
fat body, larvae L3 wandering
45
fat body, white prepupae
91
fat body, pupae P8
87
carcass, larvae L3 wandering
250
carcass, 1-day adult
54
carcass, 4-day adult
67
carcass, 20-day adult
109
ovary, virgin 4-day female
168
ovary, mated 4-day female
125
testis, mated 4-day male
81
accessory gland, mated 4-day male
60
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Tissue
Expression Level
imaginal disc, larvae L3 wandering
85
central nervous system, larvae L3
69
central nervous system, pupae P8
97
head, virgin 1-day female
67
head, virgin 4-day female
70
head, virgin 20-day female
113
head, mated 1-day female
57
head, mated 4-day female
54
head, mated 20-day female
77
head, mated 1-day male
104
head, mated 4-day male
85
head, mated 20-day male
132
salivary gland, larvae L3 wandering
14
salivary gland, white prepupae
24
digestive system, larvae L3 wandering
599
digestive system, 1-day adult
132
digestive system, 4-day adult
95
digestive system, 20-day adult
122
fat body, larvae L3 wandering
45
fat body, white prepupae
91
fat body, pupae P8
87
carcass, larvae L3 wandering
250
carcass, 1-day adult
54
carcass, 4-day adult
67
carcass, 20-day adult
109
ovary, virgin 4-day female
168
ovary, mated 4-day female
125
testis, mated 4-day male
81
accessory gland, mated 4-day male
60
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
log, scaled to Moderate expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
(85)
central nervous system, larvae L3
(69)
central nervous system, pupae P8
(97)
head, virgin 1-day female
(67)
head, virgin 4-day female
(70)
head, virgin 20-day female
(113)
head, mated 1-day female
(57)
head, mated 4-day female
(54)
head, mated 20-day female
(77)
head, mated 1-day male
(104)
head, mated 4-day male
(85)
head, mated 20-day male
(132)
salivary gland, larvae L3 wandering
14
salivary gland, white prepupae
24
digestive system, larvae L3 wandering
(599)
digestive system, 1-day adult
(132)
digestive system, 4-day adult
(95)
digestive system, 20-day adult
(122)
fat body, larvae L3 wandering
(45)
fat body, white prepupae
(91)
fat body, pupae P8
(87)
carcass, larvae L3 wandering
(250)
carcass, 1-day adult
(54)
carcass, 4-day adult
(67)
carcass, 20-day adult
(109)
ovary, virgin 4-day female
(168)
ovary, mated 4-day female
(125)
testis, mated 4-day male
(81)
accessory gland, mated 4-day male
(60)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
85
central nervous system, larvae L3
69
central nervous system, pupae P8
97
head, virgin 1-day female
67
head, virgin 4-day female
70
head, virgin 20-day female
113
head, mated 1-day female
57
head, mated 4-day female
54
head, mated 20-day female
77
head, mated 1-day male
104
head, mated 4-day male
85
head, mated 20-day male
132
salivary gland, larvae L3 wandering
14
salivary gland, white prepupae
24
digestive system, larvae L3 wandering
(599)
digestive system, 1-day adult
132
digestive system, 4-day adult
95
digestive system, 20-day adult
122
fat body, larvae L3 wandering
45
fat body, white prepupae
91
fat body, pupae P8
87
carcass, larvae L3 wandering
(250)
carcass, 1-day adult
54
carcass, 4-day adult
67
carcass, 20-day adult
109
ovary, virgin 4-day female
(168)
ovary, mated 4-day female
125
testis, mated 4-day male
81
accessory gland, mated 4-day male
60
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
85
central nervous system, larvae L3
69
central nervous system, pupae P8
97
head, virgin 1-day female
67
head, virgin 4-day female
70
head, virgin 20-day female
113
head, mated 1-day female
57
head, mated 4-day female
54
head, mated 20-day female
77
head, mated 1-day male
104
head, mated 4-day male
85
head, mated 20-day male
132
salivary gland, larvae L3 wandering
14
salivary gland, white prepupae
24
digestive system, larvae L3 wandering
599
digestive system, 1-day adult
132
digestive system, 4-day adult
95
digestive system, 20-day adult
122
fat body, larvae L3 wandering
45
fat body, white prepupae
91
fat body, pupae P8
87
carcass, larvae L3 wandering
250
carcass, 1-day adult
54
carcass, 4-day adult
67
carcass, 20-day adult
109
ovary, virgin 4-day female
168
ovary, mated 4-day female
125
testis, mated 4-day male
81
accessory gland, mated 4-day male
60
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Tissue
Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male
modENCODE Development RNA-Seq
Linear, scaled to maximum expression level
Developmental Stage
Expression Level
embryo 00-02hr
78
embryo 02-04hr
31
embryo 04-06hr
35
embryo 06-08hr
39
embryo 08-10hr
52
embryo 10-12hr
56
embryo 12-14hr
53
embryo 14-16hr
31
embryo 16-18hr
47
embryo 18-20hr
33
embryo 20-22hr
17
embryo 22-24hr
26
larva L1
14
larva L2
24
larva L3 12hr old
20
larva L3 puffstage 1-2
53
larva L3 puffstage 3-6
96
larva L3 puffstage 7-9
218
white prepupae new
215
white prepupae 12hr
134
white prepupae 24hr
85
pupae 2d postWPP
77
pupae 3d postWPP
66
pupae 4d postWPP
178
adult male 01day
58
adult male 05day
66
adult male 30day
36
adult female 01day
44
adult female 05day
77
adult female 30day
72
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Moderate expression
Developmental Stage
Expression Level
embryo 00-02hr
(78)
embryo 02-04hr
(31)
embryo 04-06hr
(35)
embryo 06-08hr
(39)
embryo 08-10hr
(52)
embryo 10-12hr
(56)
embryo 12-14hr
(53)
embryo 14-16hr
(31)
embryo 16-18hr
(47)
embryo 18-20hr
(33)
embryo 20-22hr
17
embryo 22-24hr
26
larva L1
14
larva L2
24
larva L3 12hr old
20
larva L3 puffstage 1-2
(53)
larva L3 puffstage 3-6
(96)
larva L3 puffstage 7-9
(218)
white prepupae new
(215)
white prepupae 12hr
(134)
white prepupae 24hr
(85)
pupae 2d postWPP
(77)
pupae 3d postWPP
(66)
pupae 4d postWPP
(178)
adult male 01day
(58)
adult male 05day
(66)
adult male 30day
(36)
adult female 01day
(44)
adult female 05day
(77)
adult female 30day
(72)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Developmental Stage
Expression Level
embryo 00-02hr
78
embryo 02-04hr
31
embryo 04-06hr
35
embryo 06-08hr
39
embryo 08-10hr
52
embryo 10-12hr
56
embryo 12-14hr
53
embryo 14-16hr
31
embryo 16-18hr
47
embryo 18-20hr
33
embryo 20-22hr
17
embryo 22-24hr
26
larva L1
14
larva L2
24
larva L3 12hr old
20
larva L3 puffstage 1-2
53
larva L3 puffstage 3-6
96
larva L3 puffstage 7-9
(218)
white prepupae new
(215)
white prepupae 12hr
(134)
white prepupae 24hr
85
pupae 2d postWPP
77
pupae 3d postWPP
66
pupae 4d postWPP
(178)
adult male 01day
58
adult male 05day
66
adult male 30day
36
adult female 01day
44
adult female 05day
77
adult female 30day
72
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Developmental Stage
Expression Level
embryo 00-02hr
78
embryo 02-04hr
31
embryo 04-06hr
35
embryo 06-08hr
39
embryo 08-10hr
52
embryo 10-12hr
56
embryo 12-14hr
53
embryo 14-16hr
31
embryo 16-18hr
47
embryo 18-20hr
33
embryo 20-22hr
17
embryo 22-24hr
26
larva L1
14
larva L2
24
larva L3 12hr old
20
larva L3 puffstage 1-2
53
larva L3 puffstage 3-6
96
larva L3 puffstage 7-9
218
white prepupae new
215
white prepupae 12hr
134
white prepupae 24hr
85
pupae 2d postWPP
77
pupae 3d postWPP
66
pupae 4d postWPP
178
adult male 01day
58
adult male 05day
66
adult male 30day
36
adult female 01day
44
adult female 05day
77
adult female 30day
72
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Developmental Stage
Expression Level
embryo 00-02hr
78
embryo 02-04hr
31
embryo 04-06hr
35
embryo 06-08hr
39
embryo 08-10hr
52
embryo 10-12hr
56
embryo 12-14hr
53
embryo 14-16hr
31
embryo 16-18hr
47
embryo 18-20hr
33
embryo 20-22hr
17
embryo 22-24hr
26
larva L1
14
larva L2
24
larva L3 12hr old
20
larva L3 puffstage 1-2
53
larva L3 puffstage 3-6
96
larva L3 puffstage 7-9
218
white prepupae new
215
white prepupae 12hr
134
white prepupae 24hr
85
pupae 2d postWPP
77
pupae 3d postWPP
66
pupae 4d postWPP
178
adult male 01day
58
adult male 05day
66
adult male 30day
36
adult female 01day
44
adult female 05day
77
adult female 30day
72
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Moderate expression
Developmental Stage
Expression Level
embryo 00-02hr
(78)
embryo 02-04hr
31
embryo 04-06hr
(35)
embryo 06-08hr
(39)
embryo 08-10hr
(52)
embryo 10-12hr
(56)
embryo 12-14hr
(53)
embryo 14-16hr
31
embryo 16-18hr
(47)
embryo 18-20hr
(33)
embryo 20-22hr
17
embryo 22-24hr
26
larva L1
14
larva L2
24
larva L3 12hr old
20
larva L3 puffstage 1-2
(53)
larva L3 puffstage 3-6
(96)
larva L3 puffstage 7-9
(218)
white prepupae new
(215)
white prepupae 12hr
(134)
white prepupae 24hr
(85)
pupae 2d postWPP
(77)
pupae 3d postWPP
(66)
pupae 4d postWPP
(178)
adult male 01day
(58)
adult male 05day
(66)
adult male 30day
(36)
adult female 01day
(44)
adult female 05day
(77)
adult female 30day
(72)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Developmental Stage
Expression Level
embryo 00-02hr
78
embryo 02-04hr
31
embryo 04-06hr
35
embryo 06-08hr
39
embryo 08-10hr
52
embryo 10-12hr
56
embryo 12-14hr
53
embryo 14-16hr
31
embryo 16-18hr
47
embryo 18-20hr
33
embryo 20-22hr
17
embryo 22-24hr
26
larva L1
14
larva L2
24
larva L3 12hr old
20
larva L3 puffstage 1-2
53
larva L3 puffstage 3-6
96
larva L3 puffstage 7-9
(218)
white prepupae new
(215)
white prepupae 12hr
134
white prepupae 24hr
85
pupae 2d postWPP
77
pupae 3d postWPP
66
pupae 4d postWPP
(178)
adult male 01day
58
adult male 05day
66
adult male 30day
36
adult female 01day
44
adult female 05day
77
adult female 30day
72
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Developmental Stage
Expression Level
embryo 00-02hr
78
embryo 02-04hr
31
embryo 04-06hr
35
embryo 06-08hr
39
embryo 08-10hr
52
embryo 10-12hr
56
embryo 12-14hr
53
embryo 14-16hr
31
embryo 16-18hr
47
embryo 18-20hr
33
embryo 20-22hr
17
embryo 22-24hr
26
larva L1
14
larva L2
24
larva L3 12hr old
20
larva L3 puffstage 1-2
53
larva L3 puffstage 3-6
96
larva L3 puffstage 7-9
218
white prepupae new
215
white prepupae 12hr
134
white prepupae 24hr
85
pupae 2d postWPP
77
pupae 3d postWPP
66
pupae 4d postWPP
178
adult male 01day
58
adult male 05day
66
adult male 30day
36
adult female 01day
44
adult female 05day
77
adult female 30day
72
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Developmental Stage
Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day
modENCODE Cell Lines RNA-Seq
Linear, scaled to maximum expression level
Cell Line
Expression Level
Schneider line 2 S2R+
35
Schneider line 2 Sg4
35
embryonic 1182-4H
63
embryonic GM2
126
embryonic Kc167
68
embryonic S1
103
embryonic S3
83
leg disc CME L1
22
wing disc CME-W2
65
wing disc ML-DmD8
59
wing disc ML-DmD9
56
wing disc ML-DmD16-c3
51
wing disc ML-DmD21
59
wing disc ML-DmD32
48
haltere disc ML-DmD17-c3
70
eye-antennal disc ML-DmD11
67
antennal disc ML-DmD20-c5
59
mixed discs ML-DmD4-c1
47
CNS ML-DmBG1-c1
72
CNS ML-DmBG2-c2
83
tumorous blood cells mbn2
43
ovary fGS/OSS
80
ovary OSC
58
ovary OSS
39
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Moderate expression
Cell Line
Expression Level
Schneider line 2 S2R+
(35)
Schneider line 2 Sg4
(35)
embryonic 1182-4H
(63)
embryonic GM2
(126)
embryonic Kc167
(68)
embryonic S1
(103)
embryonic S3
(83)
leg disc CME L1
22
wing disc CME-W2
(65)
wing disc ML-DmD8
(59)
wing disc ML-DmD9
(56)
wing disc ML-DmD16-c3
(51)
wing disc ML-DmD21
(59)
wing disc ML-DmD32
(48)
haltere disc ML-DmD17-c3
(70)
eye-antennal disc ML-DmD11
(67)
antennal disc ML-DmD20-c5
(59)
mixed discs ML-DmD4-c1
(47)
CNS ML-DmBG1-c1
(72)
CNS ML-DmBG2-c2
(83)
tumorous blood cells mbn2
(43)
ovary fGS/OSS
(80)
ovary OSC
(58)
ovary OSS
(39)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Cell Line
Expression Level
Schneider line 2 S2R+
35
Schneider line 2 Sg4
35
embryonic 1182-4H
63
embryonic GM2
(126)
embryonic Kc167
68
embryonic S1
103
embryonic S3
83
leg disc CME L1
22
wing disc CME-W2
65
wing disc ML-DmD8
59
wing disc ML-DmD9
56
wing disc ML-DmD16-c3
51
wing disc ML-DmD21
59
wing disc ML-DmD32
48
haltere disc ML-DmD17-c3
70
eye-antennal disc ML-DmD11
67
antennal disc ML-DmD20-c5
59
mixed discs ML-DmD4-c1
47
CNS ML-DmBG1-c1
72
CNS ML-DmBG2-c2
83
tumorous blood cells mbn2
43
ovary fGS/OSS
80
ovary OSC
58
ovary OSS
39
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Cell Line
Expression Level
Schneider line 2 S2R+
35
Schneider line 2 Sg4
35
embryonic 1182-4H
63
embryonic GM2
126
embryonic Kc167
68
embryonic S1
103
embryonic S3
83
leg disc CME L1
22
wing disc CME-W2
65
wing disc ML-DmD8
59
wing disc ML-DmD9
56
wing disc ML-DmD16-c3
51
wing disc ML-DmD21
59
wing disc ML-DmD32
48
haltere disc ML-DmD17-c3
70
eye-antennal disc ML-DmD11
67
antennal disc ML-DmD20-c5
59
mixed discs ML-DmD4-c1
47
CNS ML-DmBG1-c1
72
CNS ML-DmBG2-c2
83
tumorous blood cells mbn2
43
ovary fGS/OSS
80
ovary OSC
58
ovary OSS
39
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Cell Line
Expression Level
Schneider line 2 S2R+
35
Schneider line 2 Sg4
35
embryonic 1182-4H
63
embryonic GM2
126
embryonic Kc167
68
embryonic S1
103
embryonic S3
83
leg disc CME L1
22
wing disc CME-W2
65
wing disc ML-DmD8
59
wing disc ML-DmD9
56
wing disc ML-DmD16-c3
51
wing disc ML-DmD21
59
wing disc ML-DmD32
48
haltere disc ML-DmD17-c3
70
eye-antennal disc ML-DmD11
67
antennal disc ML-DmD20-c5
59
mixed discs ML-DmD4-c1
47
CNS ML-DmBG1-c1
72
CNS ML-DmBG2-c2
83
tumorous blood cells mbn2
43
ovary fGS/OSS
80
ovary OSC
58
ovary OSS
39
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Moderate expression
Cell Line
Expression Level
Schneider line 2 S2R+
(35)
Schneider line 2 Sg4
(35)
embryonic 1182-4H
(63)
embryonic GM2
(126)
embryonic Kc167
(68)
embryonic S1
(103)
embryonic S3
(83)
leg disc CME L1
22
wing disc CME-W2
(65)
wing disc ML-DmD8
(59)
wing disc ML-DmD9
(56)
wing disc ML-DmD16-c3
(51)
wing disc ML-DmD21
(59)
wing disc ML-DmD32
(48)
haltere disc ML-DmD17-c3
(70)
eye-antennal disc ML-DmD11
(67)
antennal disc ML-DmD20-c5
(59)
mixed discs ML-DmD4-c1
(47)
CNS ML-DmBG1-c1
(72)
CNS ML-DmBG2-c2
(83)
tumorous blood cells mbn2
(43)
ovary fGS/OSS
(80)
ovary OSC
(58)
ovary OSS
(39)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Cell Line
Expression Level
Schneider line 2 S2R+
35
Schneider line 2 Sg4
35
embryonic 1182-4H
63
embryonic GM2
126
embryonic Kc167
68
embryonic S1
103
embryonic S3
83
leg disc CME L1
22
wing disc CME-W2
65
wing disc ML-DmD8
59
wing disc ML-DmD9
56
wing disc ML-DmD16-c3
51
wing disc ML-DmD21
59
wing disc ML-DmD32
48
haltere disc ML-DmD17-c3
70
eye-antennal disc ML-DmD11
67
antennal disc ML-DmD20-c5
59
mixed discs ML-DmD4-c1
47
CNS ML-DmBG1-c1
72
CNS ML-DmBG2-c2
83
tumorous blood cells mbn2
43
ovary fGS/OSS
80
ovary OSC
58
ovary OSS
39
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Cell Line
Expression Level
Schneider line 2 S2R+
35
Schneider line 2 Sg4
35
embryonic 1182-4H
63
embryonic GM2
126
embryonic Kc167
68
embryonic S1
103
embryonic S3
83
leg disc CME L1
22
wing disc CME-W2
65
wing disc ML-DmD8
59
wing disc ML-DmD9
56
wing disc ML-DmD16-c3
51
wing disc ML-DmD21
59
wing disc ML-DmD32
48
haltere disc ML-DmD17-c3
70
eye-antennal disc ML-DmD11
67
antennal disc ML-DmD20-c5
59
mixed discs ML-DmD4-c1
47
CNS ML-DmBG1-c1
72
CNS ML-DmBG2-c2
83
tumorous blood cells mbn2
43
ovary fGS/OSS
80
ovary OSC
58
ovary OSS
39
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Cell Line
Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS
modENCODE Treatments RNA-Seq
Linear, scaled to maximum expression level
Treatment
Expression Level
extended cold, 4-day adult
67
cold shock, 4-day adult
64
heat shock, 4-day adult
70
Cadmium 50 mM 6 hrs, larvae L3
56
Cadmium 50 mM 12 hrs, larvae L3
168
Cadmium 50 mM 48 hrs, 4-day adult
87
Cadmium 100 mM 48 hrs, 4-day adult
177
Copper 0.5 mM 12 hrs, larvae L3
31
Copper 15 mM 48 hrs, 4-day adult
107
Zinc 5 mM 12 hrs, larvae L3
39
Zinc 4.5 mM 48 hrs, 4-day adult
75
Ethanol 2.5% 3 hrs, larvae L3
155
Ethanol 5% 3 hrs, larvae L3
76
Ethanol 10% 3 hrs, larvae L3
49
Caffeine 1.5 mg/ml 4 hrs, larvae L3
113
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
138
Caffeine 25 mg/ml 48 hrs, 4-day adult
61
Paraquat 5 mM 48 hrs, 4-day adult
106
Paraquat 10 mM 48 hrs, 4-day adult
133
Rotenone 2 μg 12 hrs, larvae L3
83
Rotenone 8 μg 12 hrs, larvae L3
62
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Moderate expression
Treatment
Expression Level
extended cold, 4-day adult
(67)
cold shock, 4-day adult
(64)
heat shock, 4-day adult
(70)
Cadmium 50 mM 6 hrs, larvae L3
(56)
Cadmium 50 mM 12 hrs, larvae L3
(168)
Cadmium 50 mM 48 hrs, 4-day adult
(87)
Cadmium 100 mM 48 hrs, 4-day adult
(177)
Copper 0.5 mM 12 hrs, larvae L3
(31)
Copper 15 mM 48 hrs, 4-day adult
(107)
Zinc 5 mM 12 hrs, larvae L3
(39)
Zinc 4.5 mM 48 hrs, 4-day adult
(75)
Ethanol 2.5% 3 hrs, larvae L3
(155)
Ethanol 5% 3 hrs, larvae L3
(76)
Ethanol 10% 3 hrs, larvae L3
(49)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
(113)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(138)
Caffeine 25 mg/ml 48 hrs, 4-day adult
(61)
Paraquat 5 mM 48 hrs, 4-day adult
(106)
Paraquat 10 mM 48 hrs, 4-day adult
(133)
Rotenone 2 μg 12 hrs, larvae L3
(83)
Rotenone 8 μg 12 hrs, larvae L3
(62)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Treatment
Expression Level
extended cold, 4-day adult
67
cold shock, 4-day adult
64
heat shock, 4-day adult
70
Cadmium 50 mM 6 hrs, larvae L3
56
Cadmium 50 mM 12 hrs, larvae L3
(168)
Cadmium 50 mM 48 hrs, 4-day adult
87
Cadmium 100 mM 48 hrs, 4-day adult
(177)
Copper 0.5 mM 12 hrs, larvae L3
31
Copper 15 mM 48 hrs, 4-day adult
107
Zinc 5 mM 12 hrs, larvae L3
39
Zinc 4.5 mM 48 hrs, 4-day adult
75
Ethanol 2.5% 3 hrs, larvae L3
(155)
Ethanol 5% 3 hrs, larvae L3
76
Ethanol 10% 3 hrs, larvae L3
49
Caffeine 1.5 mg/ml 4 hrs, larvae L3
(113)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(138)
Caffeine 25 mg/ml 48 hrs, 4-day adult
61
Paraquat 5 mM 48 hrs, 4-day adult
106
Paraquat 10 mM 48 hrs, 4-day adult
(133)
Rotenone 2 μg 12 hrs, larvae L3
83
Rotenone 8 μg 12 hrs, larvae L3
62
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Treatment
Expression Level
extended cold, 4-day adult
67
cold shock, 4-day adult
64
heat shock, 4-day adult
70
Cadmium 50 mM 6 hrs, larvae L3
56
Cadmium 50 mM 12 hrs, larvae L3
168
Cadmium 50 mM 48 hrs, 4-day adult
87
Cadmium 100 mM 48 hrs, 4-day adult
177
Copper 0.5 mM 12 hrs, larvae L3
31
Copper 15 mM 48 hrs, 4-day adult
107
Zinc 5 mM 12 hrs, larvae L3
39
Zinc 4.5 mM 48 hrs, 4-day adult
75
Ethanol 2.5% 3 hrs, larvae L3
155
Ethanol 5% 3 hrs, larvae L3
76
Ethanol 10% 3 hrs, larvae L3
49
Caffeine 1.5 mg/ml 4 hrs, larvae L3
113
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
138
Caffeine 25 mg/ml 48 hrs, 4-day adult
61
Paraquat 5 mM 48 hrs, 4-day adult
106
Paraquat 10 mM 48 hrs, 4-day adult
133
Rotenone 2 μg 12 hrs, larvae L3
83
Rotenone 8 μg 12 hrs, larvae L3
62
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Treatment
Expression Level
extended cold, 4-day adult
67
cold shock, 4-day adult
64
heat shock, 4-day adult
70
Cadmium 50 mM 6 hrs, larvae L3
56
Cadmium 50 mM 12 hrs, larvae L3
168
Cadmium 50 mM 48 hrs, 4-day adult
87
Cadmium 100 mM 48 hrs, 4-day adult
177
Copper 0.5 mM 12 hrs, larvae L3
31
Copper 15 mM 48 hrs, 4-day adult
107
Zinc 5 mM 12 hrs, larvae L3
39
Zinc 4.5 mM 48 hrs, 4-day adult
75
Ethanol 2.5% 3 hrs, larvae L3
155
Ethanol 5% 3 hrs, larvae L3
76
Ethanol 10% 3 hrs, larvae L3
49
Caffeine 1.5 mg/ml 4 hrs, larvae L3
113
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
138
Caffeine 25 mg/ml 48 hrs, 4-day adult
61
Paraquat 5 mM 48 hrs, 4-day adult
106
Paraquat 10 mM 48 hrs, 4-day adult
133
Rotenone 2 μg 12 hrs, larvae L3
83
Rotenone 8 μg 12 hrs, larvae L3
62
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Moderate expression
Treatment
Expression Level
extended cold, 4-day adult
(67)
cold shock, 4-day adult
(64)
heat shock, 4-day adult
(70)
Cadmium 50 mM 6 hrs, larvae L3
(56)
Cadmium 50 mM 12 hrs, larvae L3
(168)
Cadmium 50 mM 48 hrs, 4-day adult
(87)
Cadmium 100 mM 48 hrs, 4-day adult
(177)
Copper 0.5 mM 12 hrs, larvae L3
31
Copper 15 mM 48 hrs, 4-day adult
(107)
Zinc 5 mM 12 hrs, larvae L3
(39)
Zinc 4.5 mM 48 hrs, 4-day adult
(75)
Ethanol 2.5% 3 hrs, larvae L3
(155)
Ethanol 5% 3 hrs, larvae L3
(76)
Ethanol 10% 3 hrs, larvae L3
(49)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
(113)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(138)
Caffeine 25 mg/ml 48 hrs, 4-day adult
(61)
Paraquat 5 mM 48 hrs, 4-day adult
(106)
Paraquat 10 mM 48 hrs, 4-day adult
(133)
Rotenone 2 μg 12 hrs, larvae L3
(83)
Rotenone 8 μg 12 hrs, larvae L3
(62)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Treatment
Expression Level
extended cold, 4-day adult
67
cold shock, 4-day adult
64
heat shock, 4-day adult
70
Cadmium 50 mM 6 hrs, larvae L3
56
Cadmium 50 mM 12 hrs, larvae L3
(168)
Cadmium 50 mM 48 hrs, 4-day adult
87
Cadmium 100 mM 48 hrs, 4-day adult
(177)
Copper 0.5 mM 12 hrs, larvae L3
31
Copper 15 mM 48 hrs, 4-day adult
107
Zinc 5 mM 12 hrs, larvae L3
39
Zinc 4.5 mM 48 hrs, 4-day adult
75
Ethanol 2.5% 3 hrs, larvae L3
(155)
Ethanol 5% 3 hrs, larvae L3
76
Ethanol 10% 3 hrs, larvae L3
49
Caffeine 1.5 mg/ml 4 hrs, larvae L3
113
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
138
Caffeine 25 mg/ml 48 hrs, 4-day adult
61
Paraquat 5 mM 48 hrs, 4-day adult
106
Paraquat 10 mM 48 hrs, 4-day adult
133
Rotenone 2 μg 12 hrs, larvae L3
83
Rotenone 8 μg 12 hrs, larvae L3
62
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Treatment
Expression Level
extended cold, 4-day adult
67
cold shock, 4-day adult
64
heat shock, 4-day adult
70
Cadmium 50 mM 6 hrs, larvae L3
56
Cadmium 50 mM 12 hrs, larvae L3
168
Cadmium 50 mM 48 hrs, 4-day adult
87
Cadmium 100 mM 48 hrs, 4-day adult
177
Copper 0.5 mM 12 hrs, larvae L3
31
Copper 15 mM 48 hrs, 4-day adult
107
Zinc 5 mM 12 hrs, larvae L3
39
Zinc 4.5 mM 48 hrs, 4-day adult
75
Ethanol 2.5% 3 hrs, larvae L3
155
Ethanol 5% 3 hrs, larvae L3
76
Ethanol 10% 3 hrs, larvae L3
49
Caffeine 1.5 mg/ml 4 hrs, larvae L3
113
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
138
Caffeine 25 mg/ml 48 hrs, 4-day adult
61
Paraquat 5 mM 48 hrs, 4-day adult
106
Paraquat 10 mM 48 hrs, 4-day adult
133
Rotenone 2 μg 12 hrs, larvae L3
83
Rotenone 8 μg 12 hrs, larvae L3
62
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Treatment
Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
External Data & Images
Linkouts
- Cell culture data for RNAi and other high-throughput technologies
- Adult expression by tissue, using Affymetrix Dros2 array
Alleles & Phenotypes Summary of Allele Phenotypes Classical Alleles ( 2 ) For All Classical Alleles Show Alleles Carried on Transgenic Constructs
( 1 ) For All Alleles Carried on Transgenic
Constructs Show Aneuploid Aberrations Transgenic Constructs & Insertions
Transgenic Constructs Insertions insertion of mobile activating element
insertion of enhancer trap
Gene Ontology: Function, Process
& Cellular Component ( 4 unique terms )There is no information supporting a
molecular function term for this gene.
(Based on a review of available data on: 2010-12-09)
Terms Based on
Experimental Evidence ( 2 terms ) Molecular Function ( 0 terms) Biological Process ( 0 terms) Cellular Component inferred from direct assay
inferred from direct assay
Terms Based on Predictions or
Assertions ( 2 terms ) Molecular Function ( 0 terms) Biological Process inferred from sequence or structural similarity
inferred from sequence or structural similarity
Cellular Component ( 0 terms) Sequence Ontology: Class of Gene Interactions & Pathways
Summary of Physical Interactions
protein-protein anti bait coimmunoprecipitation, anti tag western blot, pull down
Summary of Genetic Interactions Interacts with Please look at the allele data
for full details of the genetic interactions
External Data Linkouts
- A database of protein and genetic interactions
- A comprehensive database of gene and protein interactions.
Protein-protein interactions (PPI) from both known and predicted PPI data sets.
Orthologs
OrthoDB Orthologs (0)
- based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
OrthoDB orthology group searches
Drosophila inclusive ortholog search
No orthologs identified
Dipteran inclusive ortholog search
No orthologs identified
Insect inclusive ortholog search
No orthologs identified
Arthropod inclusive ortholog search
No orthologs identified
Metazoa inclusive ortholog search
No orthologs identified
Orthologs in Drosophila Species (None identified)
No orthologies identified
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)AAA Orthologs (0)
based on analysis using Dmel annotation version 4.3
Stocks & Reagents Stocks Listed in FlyBase ( 2 )Bloomington Kyoto Genomic Clones ( 2 )Please Note FlyBase no
longer curates genomic clone accessions so this list
may not be complete
cDNA Clones ( 243 )Please Note This section lists
cDNAs and ESTs that fall within the genomic extent
of the gene model, which may include cDNAs and ESTs
of genes within introns, or of overlapping genes.
Please see
GBrowse for alignment of the cDNAs and ESTs
to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones Other clones cDNA Clones, End Sequenced
(ESTs) BDGP DGC clones Other clones RNAi & Array Information Linkouts
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Antibody Information
Other Information Discoverer Etymology Identification Relationship to Other Genes Source for database identity of Source for identity of: CR32744 CG32744
Source for database merge of Source for merge of: Ubi-p5E CG32744
Additional comments Other Comments Ubi-p5E and
CG11700 were derived from a single event of segmental tandem duplication. Both encode putative Ubiquitins.
Ubi-p5E is conserved, ubiquitously expressed, and likely retains the function of the ancestral gene, whereas
CG11700 has accumulated many nonsynonymous substitutions, has a male-specific pattern, and has likely undergone neofunctionalization.
Annotation CG32744 renamed CR32744 in release 5.2 of the genome annotation.
Annotation CG18282 renamed CG32744 in release 3 of the genome annotation.
Antibody staining of polytene chromosomes shows that ubiquitin is mainly associated with the compact and stabilized structure that forms the bands rather than with the more decondensed and destabilized protein-DNA structure that forms interbands and puffs.
External Crossreferences & Linkouts
Sequence Crossreferences
- A searchable database of RefSeq genes.
Other Crossreferences
domains - A database of protein families, domains, and functional sites
Linkouts
- A database of protein and genetic interactions
- A comprehensive database of gene and protein interactions.
- Cell culture data for RNAi and other high-throughput technologies
- Adult expression by tissue, using Affymetrix Dros2 array
- Integrated genomics database for Drosophila, Anopheles, and C.elegans
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Protein-protein interactions (PPI) from both known and predicted PPI data sets.
- Data generated by the modENCODE project.
Synonyms & Secondary IDs
( 10 )Reported As Symbol Synonym CG32744
(
Marygold, 2007.1.12 ,
Laviolette et al., 2005 ,
FlyBase Genome Annotators, 2007 ,
Ida et al., 2009 ,
Ditzel et al., 2008 ,
Hughes et al., 2008 ,
Zhan et al., 2012 ,
Ni et al., 2010.12.1 )
Name Synonym ubiquitin
(
Park et al., 2005 ,
Auluck et al., 2002 ,
Finley et al., 2003 ,
Moberg et al., 2005 ,
Simonsen et al., 2007 ,
Murphey and Godenschwege, 2002 ,
Schmitz et al., 2003 )
Secondary FlyBase
IDs FBgn0014439 FBgn0029855 FBgn0052744 References ( 40 )Generate a list of List References by type
Recent research papers ( 4 )
Zhan et al., 2012, Mol. Biol. Evol. 29(5): 1407--1416Rapid Functional Divergence of a Newly Evolved Polyubiquitin Gene in Drosophila and Its Role in the Trade-off between Male Fecundity and Lifespan. [FBrf0218166] Franco et al., 2011, Mol. Cell. Proteomics 10(5): M110.002188A Novel Strategy to Isolate Ubiquitin Conjugates Reveals Wide Role for Ubiquitination during Neural Development. [FBrf0213919] Hoe et al., 2011, Aging 3(3): 237--261Ubiquitin over-expression phenotypes and ubiquitin gene molecular misreading during aging in Drosophila melanogaster. [FBrf0213373] Morawe et al., 2011, J. Cell Biol. 193(1): 71--80Loss of the extraproteasomal ubiquitin receptor Rings lost impairs ring canal growth in Drosophila oogenesis. [FBrf0213374]
Recent reviews (0)
All reviews listed in FlyBase were published before 2011