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Gene Dmel\Egm

General Information
Symbol	Dmel\Egm	Species	D. melanogaster
Name	Enigma	Annotation symbol	CG9006
Feature type	protein_coding_gene	FlyBase ID	FBgn0086712
Gene Model Status	Current	Stock availability	3 publicly available
Also Known As	l(2)k14708
Genomic Location
Chromosome (arm)	2R	Recombination map	2-
Cytogenetic map	48A3-48A3	Sequence location	2R:7,504,374..7,506,528 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Enigma is referred to in FlyBase by the symbol Dmel\Egm (CG9006, FBgn0086712). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: long-chain-acyl-CoA dehydrogenase activity. There is experimental evidence that it is involved in the biological process: response to oxidative stress; multicellular organism reproduction; compound eye morphogenesis. 9 alleles are reported. The phenotypes of these alleles are annotated with: eye disc; wing disc; embryonic/larval fat body; imaginal disc. It has one annotated transcript and one annotated polypeptide. Protein features are: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA dehydrogenase/oxidase; Acyl-CoA dehydrogenase/oxidase C-terminal; Acyl-CoA dehydrogenase/oxidase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during early larval stages, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval/adult hindgut, adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1639259_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Egm. Gene sequence location is 2R:7504374..7506528.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 48A3-48A3   Limits computationally determined from genome sequence between P{lacW}l(2)k13403k13403&P{lacW}Egmk14708 and P{lacW}oho48Ak06524
Experimentally Determined Cytological Location
Cytogenetic map Notes References 48A4-48A5   Mapped using complementation analysis (details unspecified).   (Mourikis and Artavanis-Tsakonas, 2001) 48A3-48A5   (determined by in situ hybridisation)   (Spradling et al., 1999) 48A3-48A5     (BDGP Project Members, 1994-1999)
Experimentally Determined Recombination Data
Location	2- (Verheyen et al., 1996)
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Egm for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Low-frequency RNA-Seq exon junction(s) not annotated. Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Egm-RA FBtr0088090  NM_136843   2033   639
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Egm-PA   FBpp0087192   70.8   639   6.40     NP_610687   AAF58637
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Acyl-CoA dehydrogenase/oxidase, N-terminal (IPR013786) Acyl-CoA oxidase/dehydrogenase, central domain (IPR006091) Acyl-CoA dehydrogenase/oxidase (IPR009100) Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075) Acyl-CoA oxidase/dehydrogenase, type 1 (IPR006090) Acyl-CoA dehydrogenase, N-terminal (IPR006092)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA803769   AA942470   AA952118   AE013599 AAF58637   AI259049   AI386873   AI515946   AI516770   AI518837   AI518992   AI532728   AQ034037   BG635459   BG635826   BG640349   BI228854   BI232125   BI352801   BI632604   BQ103274   BT016075 AAV36960   CK604503   CO272138   CO305035   EC226176   GH749591   GH752004   GH753266   GH759653   GH770298   GH771267   GH773744   GH775651   GH776005   GH777489   GH780457   GH781674   GH788644   GH789489   GH790129   GH791369   GH792874   GH797111   GH798702   GH799685   GH803013   GH807379   GH808415   GH808582   GH810131   GH811925   GH811965   GH815054   GH819307   GH821058   GH821799   GH825515   GH825671   GH825751   GH826380   GH826483   GH827508   GH828350   GH832495   GH846638   GH847709   GH850116   GH850650   GH852277   GH856740   GH858417   GH861330   GH863101   GH863107   GH864139   GH864784   GH872590   GH874259   GH876946   GH879892   GH880337   GH891576   GH895740   GH900582   GH904956   GH907509   GH907521   GH907555   GH907572   GH908463   GH912627   GH916798   GH920224   GH921285   GH922100   GH923293   GH925422   GH927251   GH928038   GH930003   GH934178   GH935703   GH937022   GH938838   GH938842   GH940172   GH940758
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q5U117
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   anterior endoderm anlage   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   anterior endoderm   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) hindgut proper primordium   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic hindgut   (Fisher et al., 2012) embryonic Malpighian tubule   (Fisher et al., 2012) embryonic proventriculus   (Fisher et al., 2012) embryonic/larval fat body   (Fisher et al., 2012) embryonic/larval garland cell   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval posterior spiracle   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
extracellular space inferred from direct assay (Findlay et al., 2008)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval/adult hindgut, adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    110.125 Larval Midgut    72 Larval Hindgut    157.8 Larval Malpighian Tubules    58.4 Larval Fat Body    49.6 Larval Salivary Gland    112.5 Larval Trachea    112.975 Larval Carcass    89.75 Adult Head    97.2 Adult Eye    78.45 Adult Brain    143.1 Adult Thoracic-Abdominal Ganglion    149.2 Adult Crop    117.3 Adult Midgut    75.2 Adult Hindgut    134.8 Adult Malpighian Tubules    149.1 Adult Fat Body    126.3 Adult Salivary Gland    107.1 Adult Heart    107.5 Adult VirginFemale Spermatheca    89.4 Adult InseminatedFemale Spermatheca    95 Adult Ovary    97.8 Adult Testis    39.8 Adult Male Accessory Gland    85 Adult Carcass    136 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    110.125 Larval Midgut    72 Larval Hindgut    157.8 Larval Malpighian Tubules    58.4 Larval Fat Body    49.6 Larval Salivary Gland    112.5 Larval Trachea    112.975 Larval Carcass    89.75 Adult Head    97.2 Adult Eye    78.45 Adult Brain    143.1 Adult Thoracic-Abdominal Ganglion    149.2 Adult Crop    117.3 Adult Midgut    75.2 Adult Hindgut    134.8 Adult Malpighian Tubules    149.1 Adult Fat Body    126.3 Adult Salivary Gland    107.1 Adult Heart    107.5 Adult VirginFemale Spermatheca    89.4 Adult InseminatedFemale Spermatheca    95 Adult Ovary    97.8 Adult Testis    39.8 Adult Male Accessory Gland    85 Adult Carcass    136 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    110.125 Larval Midgut    72 Larval Hindgut    157.8 Larval Malpighian Tubules    58.4 Larval Fat Body    49.6 Larval Salivary Gland    112.5 Larval Trachea    112.975 Larval Carcass    89.75 Adult Head    97.2 Adult Eye    78.45 Adult Brain    143.1 Adult Thoracic-Abdominal Ganglion    149.2 Adult Crop    117.3 Adult Midgut    75.2 Adult Hindgut    134.8 Adult Malpighian Tubules    149.1 Adult Fat Body    126.3 Adult Salivary Gland    107.1 Adult Heart    107.5 Adult VirginFemale Spermatheca    89.4 Adult InseminatedFemale Spermatheca    95 Adult Ovary    97.8 Adult Testis    39.8 Adult Male Accessory Gland    85 Adult Carcass    136 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    110.125 Larval Midgut    72 Larval Hindgut    157.8 Larval Malpighian Tubules    58.4 Larval Fat Body    49.6 Larval Salivary Gland    112.5 Larval Trachea    112.975 Larval Carcass    89.75 Adult Head    97.2 Adult Eye    78.45 Adult Brain    143.1 Adult Thoracic-Abdominal Ganglion    149.2 Adult Crop    117.3 Adult Midgut    75.2 Adult Hindgut    134.8 Adult Malpighian Tubules    149.1 Adult Fat Body    126.3 Adult Salivary Gland    107.1 Adult Heart    107.5 Adult VirginFemale Spermatheca    89.4 Adult InseminatedFemale Spermatheca    95 Adult Ovary    97.8 Adult Testis    39.8 Adult Male Accessory Gland    85 Adult Carcass    136 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    110.125 Larval Midgut    72 Larval Hindgut    157.8 Larval Malpighian Tubules    58.4 Larval Fat Body    49.6 Larval Salivary Gland    112.5 Larval Trachea    112.975 Larval Carcass    89.75 Adult Head    97.2 Adult Eye    78.45 Adult Brain    143.1 Adult Thoracic-Abdominal Ganglion    149.2 Adult Crop    117.3 Adult Midgut    75.2 Adult Hindgut    134.8 Adult Malpighian Tubules    149.1 Adult Fat Body    126.3 Adult Salivary Gland    107.1 Adult Heart    107.5 Adult VirginFemale Spermatheca    89.4 Adult InseminatedFemale Spermatheca    95 Adult Ovary    97.8 Adult Testis    39.8 Adult Male Accessory Gland    85 Adult Carcass    136 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    110.125 Larval Midgut    72 Larval Hindgut    157.8 Larval Malpighian Tubules    58.4 Larval Fat Body    49.6 Larval Salivary Gland    112.5 Larval Trachea    112.975 Larval Carcass    89.75 Adult Head    97.2 Adult Eye    78.45 Adult Brain    143.1 Adult Thoracic-Abdominal Ganglion    149.2 Adult Crop    117.3 Adult Midgut    75.2 Adult Hindgut    134.8 Adult Malpighian Tubules    149.1 Adult Fat Body    126.3 Adult Salivary Gland    107.1 Adult Heart    107.5 Adult VirginFemale Spermatheca    89.4 Adult InseminatedFemale Spermatheca    95 Adult Ovary    97.8 Adult Testis    39.8 Adult Male Accessory Gland    85 Adult Carcass    136 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    110.125 Larval Midgut    72 Larval Hindgut    157.8 Larval Malpighian Tubules    58.4 Larval Fat Body    49.6 Larval Salivary Gland    112.5 Larval Trachea    112.975 Larval Carcass    89.75 Adult Head    97.2 Adult Eye    78.45 Adult Brain    143.1 Adult Thoracic-Abdominal Ganglion    149.2 Adult Crop    117.3 Adult Midgut    75.2 Adult Hindgut    134.8 Adult Malpighian Tubules    149.1 Adult Fat Body    126.3 Adult Salivary Gland    107.1 Adult Heart    107.5 Adult VirginFemale Spermatheca    89.4 Adult InseminatedFemale Spermatheca    95 Adult Ovary    97.8 Adult Testis    39.8 Adult Male Accessory Gland    85 Adult Carcass    136 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    110.125 Larval Midgut    72 Larval Hindgut    157.8 Larval Malpighian Tubules    58.4 Larval Fat Body    49.6 Larval Salivary Gland    112.5 Larval Trachea    112.975 Larval Carcass    89.75 Adult Head    97.2 Adult Eye    78.45 Adult Brain    143.1 Adult Thoracic-Abdominal Ganglion    149.2 Adult Crop    117.3 Adult Midgut    75.2 Adult Hindgut    134.8 Adult Malpighian Tubules    149.1 Adult Fat Body    126.3 Adult Salivary Gland    107.1 Adult Heart    107.5 Adult VirginFemale Spermatheca    89.4 Adult InseminatedFemale Spermatheca    95 Adult Ovary    97.8 Adult Testis    39.8 Adult Male Accessory Gland    85 Adult Carcass    136 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    97.2   NA  Eye    78.45   NA  Brain    143.1   110.125  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    149.2   NA  Crop    117.3   72  Midgut    75.2   157.8  Hindgut    134.8   58.4  Malpighian Tubules    149.1   49.6  Fat Body    126.3   112.5  Salivary Gland    107.1   NA  Heart    107.5   112.975  Trachea    NA   NA  VirginFemale Spermatheca    89.4   NA  InseminatedFemale Spermatheca    95   NA  Ovary    97.8   NA  Testis    39.8   NA  Male Accessory Gland    85   89.75  Carcass    136 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    7 central nervous system, pupae P8    7 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    7 head, mated 4-day male    8 head, mated 20-day male    11 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    7 digestive system, 4-day adult    6 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    9 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    10 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    7 central nervous system, pupae P8    7 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    7 head, mated 4-day male    8 head, mated 20-day male    11 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    7 digestive system, 4-day adult    6 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    9 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    10 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    7 central nervous system, pupae P8    7 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    7 head, mated 4-day male    8 head, mated 20-day male    11 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    7 digestive system, 4-day adult    6 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    9 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    10 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    7 central nervous system, pupae P8    7 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    7 head, mated 4-day male    8 head, mated 20-day male    11 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    7 digestive system, 4-day adult    6 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    9 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    10 accessory gland, mated 4-day male    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    7 central nervous system, pupae P8    7 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    7 head, mated 4-day male    8 head, mated 20-day male    11 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    7 digestive system, 4-day adult    6 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    9 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    10 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    7 central nervous system, pupae P8    7 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    7 head, mated 4-day male    8 head, mated 20-day male    11 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    7 digestive system, 4-day adult    6 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    9 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    10 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    7 central nervous system, pupae P8    7 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    7 head, mated 4-day male    8 head, mated 20-day male    11 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    7 digestive system, 4-day adult    6 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    9 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    10 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    7 central nervous system, pupae P8    7 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    7 head, mated 4-day male    8 head, mated 20-day male    11 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    7 digestive system, 4-day adult    6 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    9 ovary, virgin 4-day female    13 ovary, mated 4-day female    12 testis, mated 4-day male    10 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during early larval stages, during late pupal stages, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    21 embryo 08-10hr    22 embryo 10-12hr    32 embryo 12-14hr    20 embryo 14-16hr    29 embryo 16-18hr    27 embryo 18-20hr    27 embryo 20-22hr    22 embryo 22-24hr    21 larva L1    41 larva L2    44 larva L3 12hr old    32 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    11 larva L3 puffstage 7-9    10 white prepupae new    9 white prepupae 12hr    11 white prepupae 24hr    14 pupae 2d postWPP    26 pupae 3d postWPP    38 pupae 4d postWPP    19 adult male 01day    18 adult male 05day    18 adult male 30day    22 adult female 01day    29 adult female 05day    26 adult female 30day    27 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    21 embryo 08-10hr    22 embryo 10-12hr  (32) embryo 12-14hr    20 embryo 14-16hr  (29) embryo 16-18hr  (27) embryo 18-20hr  (27) embryo 20-22hr    22 embryo 22-24hr    21 larva L1  (41) larva L2  (44) larva L3 12hr old  (32) larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    11 larva L3 puffstage 7-9    10 white prepupae new    9 white prepupae 12hr    11 white prepupae 24hr    14 pupae 2d postWPP  26 pupae 3d postWPP  (38) pupae 4d postWPP    19 adult male 01day    18 adult male 05day    18 adult male 30day    22 adult female 01day  (29) adult female 05day  26 adult female 30day  (27) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    21 embryo 08-10hr    22 embryo 10-12hr    32 embryo 12-14hr    20 embryo 14-16hr    29 embryo 16-18hr    27 embryo 18-20hr    27 embryo 20-22hr    22 embryo 22-24hr    21 larva L1    41 larva L2    44 larva L3 12hr old    32 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    11 larva L3 puffstage 7-9    10 white prepupae new    9 white prepupae 12hr    11 white prepupae 24hr    14 pupae 2d postWPP    26 pupae 3d postWPP    38 pupae 4d postWPP    19 adult male 01day    18 adult male 05day    18 adult male 30day    22 adult female 01day    29 adult female 05day    26 adult female 30day    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    21 embryo 08-10hr    22 embryo 10-12hr    32 embryo 12-14hr    20 embryo 14-16hr    29 embryo 16-18hr    27 embryo 18-20hr    27 embryo 20-22hr    22 embryo 22-24hr    21 larva L1    41 larva L2    44 larva L3 12hr old    32 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    11 larva L3 puffstage 7-9    10 white prepupae new    9 white prepupae 12hr    11 white prepupae 24hr    14 pupae 2d postWPP    26 pupae 3d postWPP    38 pupae 4d postWPP    19 adult male 01day    18 adult male 05day    18 adult male 30day    22 adult female 01day    29 adult female 05day    26 adult female 30day    27 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    21 embryo 08-10hr    22 embryo 10-12hr    32 embryo 12-14hr    20 embryo 14-16hr    29 embryo 16-18hr    27 embryo 18-20hr    27 embryo 20-22hr    22 embryo 22-24hr    21 larva L1    41 larva L2    44 larva L3 12hr old    32 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    11 larva L3 puffstage 7-9    10 white prepupae new    9 white prepupae 12hr    11 white prepupae 24hr    14 pupae 2d postWPP    26 pupae 3d postWPP    38 pupae 4d postWPP    19 adult male 01day    18 adult male 05day    18 adult male 30day    22 adult female 01day    29 adult female 05day    26 adult female 30day    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    21 embryo 08-10hr    22 embryo 10-12hr  32 embryo 12-14hr    20 embryo 14-16hr  29 embryo 16-18hr  27 embryo 18-20hr  27 embryo 20-22hr    22 embryo 22-24hr    21 larva L1  (41) larva L2  (44) larva L3 12hr old  32 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    11 larva L3 puffstage 7-9    10 white prepupae new    9 white prepupae 12hr    11 white prepupae 24hr    14 pupae 2d postWPP  26 pupae 3d postWPP  (38) pupae 4d postWPP    19 adult male 01day    18 adult male 05day    18 adult male 30day    22 adult female 01day  29 adult female 05day  26 adult female 30day  27 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    21 embryo 08-10hr    22 embryo 10-12hr    32 embryo 12-14hr    20 embryo 14-16hr    29 embryo 16-18hr    27 embryo 18-20hr    27 embryo 20-22hr    22 embryo 22-24hr    21 larva L1    41 larva L2    44 larva L3 12hr old    32 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    11 larva L3 puffstage 7-9    10 white prepupae new    9 white prepupae 12hr    11 white prepupae 24hr    14 pupae 2d postWPP    26 pupae 3d postWPP    38 pupae 4d postWPP    19 adult male 01day    18 adult male 05day    18 adult male 30day    22 adult female 01day    29 adult female 05day    26 adult female 30day    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    17 embryo 04-06hr    17 embryo 06-08hr    21 embryo 08-10hr    22 embryo 10-12hr    32 embryo 12-14hr    20 embryo 14-16hr    29 embryo 16-18hr    27 embryo 18-20hr    27 embryo 20-22hr    22 embryo 22-24hr    21 larva L1    41 larva L2    44 larva L3 12hr old    32 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    11 larva L3 puffstage 7-9    10 white prepupae new    9 white prepupae 12hr    11 white prepupae 24hr    14 pupae 2d postWPP    26 pupae 3d postWPP    38 pupae 4d postWPP    19 adult male 01day    18 adult male 05day    18 adult male 30day    22 adult female 01day    29 adult female 05day    26 adult female 30day    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    75 Schneider line 2 Sg4    26 embryonic 1182-4H    17 embryonic GM2    22 embryonic Kc167    34 embryonic S1    26 embryonic S3    36 leg disc CME L1    18 wing disc CME-W2    21 wing disc ML-DmD8    15 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    15 wing disc ML-DmD21    28 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    27 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    25 mixed discs ML-DmD4-c1    23 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    14 ovary fGS/OSS    10 ovary OSC    15 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (75) Schneider line 2 Sg4  26 embryonic 1182-4H    17 embryonic GM2    22 embryonic Kc167  (34) embryonic S1  26 embryonic S3  (36) leg disc CME L1    18 wing disc CME-W2    21 wing disc ML-DmD8    15 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    15 wing disc ML-DmD21  (28) wing disc ML-DmD32    11 haltere disc ML-DmD17-c3  (27) eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    25 mixed discs ML-DmD4-c1    23 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2  (38) tumorous blood cells mbn2    14 ovary fGS/OSS    10 ovary OSC    15 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    75 Schneider line 2 Sg4    26 embryonic 1182-4H    17 embryonic GM2    22 embryonic Kc167    34 embryonic S1    26 embryonic S3    36 leg disc CME L1    18 wing disc CME-W2    21 wing disc ML-DmD8    15 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    15 wing disc ML-DmD21    28 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    27 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    25 mixed discs ML-DmD4-c1    23 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    14 ovary fGS/OSS    10 ovary OSC    15 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    75 Schneider line 2 Sg4    26 embryonic 1182-4H    17 embryonic GM2    22 embryonic Kc167    34 embryonic S1    26 embryonic S3    36 leg disc CME L1    18 wing disc CME-W2    21 wing disc ML-DmD8    15 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    15 wing disc ML-DmD21    28 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    27 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    25 mixed discs ML-DmD4-c1    23 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    14 ovary fGS/OSS    10 ovary OSC    15 ovary OSS    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    75 Schneider line 2 Sg4    26 embryonic 1182-4H    17 embryonic GM2    22 embryonic Kc167    34 embryonic S1    26 embryonic S3    36 leg disc CME L1    18 wing disc CME-W2    21 wing disc ML-DmD8    15 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    15 wing disc ML-DmD21    28 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    27 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    25 mixed discs ML-DmD4-c1    23 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    14 ovary fGS/OSS    10 ovary OSC    15 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (75) Schneider line 2 Sg4  26 embryonic 1182-4H    17 embryonic GM2    22 embryonic Kc167  (34) embryonic S1  26 embryonic S3  (36) leg disc CME L1    18 wing disc CME-W2    21 wing disc ML-DmD8    15 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    15 wing disc ML-DmD21  28 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3  27 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    25 mixed discs ML-DmD4-c1    23 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2  (38) tumorous blood cells mbn2    14 ovary fGS/OSS    10 ovary OSC    15 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    75 Schneider line 2 Sg4    26 embryonic 1182-4H    17 embryonic GM2    22 embryonic Kc167    34 embryonic S1    26 embryonic S3    36 leg disc CME L1    18 wing disc CME-W2    21 wing disc ML-DmD8    15 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    15 wing disc ML-DmD21    28 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    27 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    25 mixed discs ML-DmD4-c1    23 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    14 ovary fGS/OSS    10 ovary OSC    15 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    75 Schneider line 2 Sg4    26 embryonic 1182-4H    17 embryonic GM2    22 embryonic Kc167    34 embryonic S1    26 embryonic S3    36 leg disc CME L1    18 wing disc CME-W2    21 wing disc ML-DmD8    15 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    15 wing disc ML-DmD21    28 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    27 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    25 mixed discs ML-DmD4-c1    23 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    14 ovary fGS/OSS    10 ovary OSC    15 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    4 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    14 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    4 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    14 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    4 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    14 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    4 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    14 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    4 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    14 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    4 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    14 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    4 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    14 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    4 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    14 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_19 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	BDGP expression data • GM14222 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0086712 FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Egm Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | larval stage Egm1 Egmk14708 lethal | recessive Egmk14708 lethal | third instar larval stage Egm1 viable EgmH Other Phenotypes Allele long lived | larval stage Egm1 EgmH long lived | pupal stage EgmH Phenotype manifest in Allele embryonic/larval fat body Egm1 eye disc Egm1 imaginal disc Egmk14708 wing disc Egm1
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of Egm Class Mutagen Stocks Known lesion Egmk14708 loss of function allele P-element activity 2 -- Egm1 loss of function allele 0 Yes EgmH hypomorphic allele - genetic evidence 0 Yes
Alleles Carried on Transgenic Constructs ( 6 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Egm Class Mutagen Stocks Known lesion EgmHMS01630 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Egm+tMa in vitro construct - genomic fragment 0 Yes EgmdsRNA.cMa in vitro construct - RNAi 0 Yes EgmGD5745 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes EgmNIG.9006R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes EgmT:Hsap\MYC in vitro construct - coding region fusion 0 --
Aneuploid Aberrations
Disrupted in	Df(2R)en-B (BDGP Project Members, 1994-1999) Df(2R)en-SFX31 (Spradling et al., 1999, BDGP Project Members, 1994-1999)
Not disrupted in	Df(2R)E3363 (Spradling et al., 1999, BDGP Project Members, 1994-1999) Df(2R)ix87i3 (BDGP Project Members, 1994-1999) In(2R)vgW (Spradling et al., 1999, BDGP Project Members, 1994-1999)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD5745} NA P{NIG.9006R} NA P{TRiP.HMS01630} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}EP2116 NA P{EP}touEP622 NA insertion of enhancer trap P{lacW}Egmk14708 No P{lacW}l(2)SH1866SH1866 No miscellaneous insertions P{SUPor-P}touKG04840 NA P{UAST-YFP.Rab26.T204N}tou02 NA
Gene Ontology: Function, Process & Cellular Component ( 7 unique terms )
Terms Based on Experimental Evidence ( 4 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
compound eye morphogenesis inferred from genetic interaction with N (Verheyen et al., 1996) multicellular organism reproduction inferred from expression pattern (Findlay et al., 2008) response to oxidative stress inferred from direct assay (Mourikis et al., 2006)
Cellular Component
CV term Evidence References
extracellular space inferred from direct assay (Findlay et al., 2008)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
flavin adenine dinucleotide binding inferred from electronic annotation with InterPro:IPR013786 (FlyBase Curators et al., 2004-) long-chain-acyl-CoA dehydrogenase activity inferred from sequence or structural similarity with EMBL:Y11770 (FlyBase, 1992-)
Biological Process
CV term Evidence References
oxidation-reduction process inferred from electronic annotation with InterPro:IPR006090, InterPro:IPR006091, InterPro:IPR006092, InterPro:IPR009075, InterPro:IPR009100, InterPro:IPR013786 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
Egm - CG10802 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Egm - Zn72D anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Egm - mRpS28 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Egm allele Gene References Egm1 N (Verheyen et al., 1996)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 62030 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0086712 DroID - A comprehensive database of gene and protein interactions. • FBgn0086712 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36242
Orthologs
OrthoDB Orthologs (21) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6K6GPZ Dipteran inclusive ortholog search EOG6N8RD4 Insect inclusive ortholog search EOG6F1VZN Arthropod inclusive ortholog search EOG6SF7NC Metazoa inclusive ortholog search EOG6X9M9Q
Orthologs in Drosophila Species (EOG6K6GPZ)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Egm     Drosophila simulans   Dsim\GD25894     Drosophila sechellia   Dsec\GM20419     Drosophila erecta   Dere\GG22640     Drosophila yakuba   Dyak\GE13511     Drosophila ananassae   Dana\GF12390     Drosophila pseudoobscura pseudoobscura   Dpse\GA21471     Drosophila persimilis   Dper\GL10675     Drosophila willistoni   Dwil\GK22223     Drosophila virilis   Dvir\GJ21966     Drosophila mojavensis   Dmoj\GI21039     Drosophila grimshawi   Dgri\GH20496
Orthologs in non-Drosophila Dipterans (EOG6N8RD4)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL013652   Anopheles gambiae Malaria mosquito  Agam\AGAP000454   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ003795
Orthologs in non-Dipteran Insects (EOG6F1VZN)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Acyrthosiphon pisum Pea aphid  Apim\ACYPI000967   Acyrthosiphon pisum Pea aphid  Apim\ACYPI005795   Bombyx mori Silkmoth  Bmor\BGIBMGA009598   Pediculus humanus Human body louse  Phum\PHUM488820   Tribolium castaneum Red flour beetle  Tcas\TC001370
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (EOG6X9M9Q)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\C28C12.9
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	11133 y1 w67c23; P{lacW}Egmk14708/CyO 36739 y1 sc* v1; P{TRiP.HMS01630}attP40
Kyoto	111342 yd2 w1118 P{ey-FLP.N}2 P{GMR-lacZ.C(38.1)}TPN1; P{neoFRT}42D P{lacW}Egmk14708 /CyO y+
Genomic Clones ( 2 )
	BACR35F01 BACR38D12 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 104 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LP02372
Other clones	DPiM_LP02372
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH17232 GM20860 LD26711 LD29181 LD35242 LD41662 LD42827 RE26506 RE28142 SD04326 SD11344 SD12869 SD13324 SD26426 UT01241
Other clones	124918 EK106005 EK247119 GM14222 RP003019980 RP003039948 RP003040173 RP003043158 RP003044436 RP003059922 RP003067864 RP003081625 RP003086156 RP003087808 RP003089373 RP003108664 RP003116369 RP003116825 RP003121839 RP003124599 RP003130536 RP003130958 RP003133417 RP003133483 RP003146299 RP003152981 RP003162502 RP003162958 RP003170690 RP003170710 RP003181609 RP003184434 RP003188142 RP003197968 RP003217158 RP003219083 RP003234484 RP003246420 RP003246849 RP003269204 RP003298396 RP003298480 RP003299279 RP003299989 RP003302574 RP003303712 RP003308883 RP003310032 RP003313464 RP003319538 RP003321880 RP003325103 RP003326660 RP003333711 RP003337809 RP003353697 RP003370356 RP003390502 RP003405777 RP003411713 RP003415334 RP003417779 RP003443995 RP003454938 RP003474156 RP003483823 RP003489468 RP003511494 RP003521682 RP003522958 RP003528009 RP003546961 RP003581753 RP003589800 RP003591806 RP003595929 RP003607941 RP003617163 RP003620329 RP003643702 RP003649498 RP003650499 RP003658032 RP003659410 RP003678291 RP003678453 UUGC0677
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0086712 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36242
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: Egm l(2)k14708 (Mourikis, 2006.3.2) Source for merge of: l(2)k14708 CG9006 (FlyBase, 1996-)
Additional comments
Other Comments
	Reduced levels of Egm decelerate the rate of development in a dosage-dependent manner. Cells lacking Egm produce smaller wing margin bristles than in wild-type. (Mourikis et al., 2006) Gene isolated in a screen of the second chromosome identifying mutants affecting disc morphology. (Roch et al., 1998) Complementation group isolated in a screen for dominant enhancers and suppressors of Nact.sev or Nnucl.sev. (Verheyen et al., 1996)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_136843 RefSeq (Proteins) • NP_610687 DDBJ / EMBL / GenBank • AA803769 AAF58637 AAV36960 AI259049 AI518992 AQ034037 BT016075 Entrez Gene - A searchable database of RefSeq genes. • 36242 UniProtKB/TrEMBL • Q5U117
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Acyl-CoA dehydrogenase/oxidase, N-terminal (IPR013786) Acyl-CoA oxidase/dehydrogenase, central domain (IPR006091) Acyl-CoA dehydrogenase/oxidase (IPR009100) Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075) Acyl-CoA oxidase/dehydrogenase, type 1 (IPR006090) Acyl-CoA dehydrogenase, N-terminal (IPR006092) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GM14222
Linkouts
	BioGRID - A database of protein and genetic interactions • 62030 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0086712 DroID - A comprehensive database of gene and protein interactions. • FBgn0086712 DRSC - Results from RNAi screens. • FBgn0086712 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0086712 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0086712 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36242 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36242 modMine - Data generated by the modENCODE project. • FBgn0086712
Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym	Acyl CoA DH (Wheeler et al., 2004) CG9006 (Giot et al., 2003, Dworkin et al., 2001, Ni et al., 2011.7.19, Comet et al., 2006, Spresser et al., 2008, Cammarato et al., 2011, Wheeler et al., 2004) Egm (Pezzulo et al., 2012, Mourikis et al., 2006, Kwon et al., 2009, Mourikis et al., 2006, Japanese National Institute of Genetics, 2012.5.21) egm (Verheyen et al., 1996, ) l(2)k14708 (Spradling et al., 1999, Roch et al., 1998, Zhang et al., 2007)
Name Synonym	Enigma (Mourikis, 2006.3.2, Mourikis, 2003, Mourikis et al., 2006, Mourikis et al., 2006) enigma (Verheyen et al., 1996) l(2)k14708 (Cammarato et al., 2011) lethal (2) k14708
Secondary FlyBase IDs
	FBgn0019818 FBgn0021848 FBgn0033637
References ( 34 )
Generate a list of	All references relating to this gene ( 34 )
List References by type	Research paper  ( 10 ) Supplementary material  ( 9 ) Personal communication to FlyBase  ( 7 ) Abstract  ( 2 ) FlyBase analysis  ( 2 ) Stock list  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 1 )
	Pezzulo et al., 2012, PLoS ONE 7(8): e43777 Expression of Human Paraoxonase 1 Decreases Superoxide Levels and Alters Bacterial Colonization in the Gut of Drosophila melanogaster. [FBrf0219363] Show all research papers ...