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Gene Dmel\chinmo

General Information
Symbol	Dmel\chinmo	Species	D. melanogaster
Name	Chronologically inappropriate morphogenesis	Annotation symbol	CG31666
Feature type	protein_coding_gene	FlyBase ID	FBgn0086758
Gene Model Status	Current	Stock availability	14 publicly available
Also Known As	CG17156
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	22A5-22B1	Sequence location	2L:1,651,260..1,704,682 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Chronologically inappropriate morphogenesis is referred to in FlyBase by the symbol Dmel\chinmo (CG31666, FBgn0086758). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: sequence-specific DNA binding transcription factor activity. There is experimental evidence that it is involved in the biological process: dendrite morphogenesis; mushroom body development. 22 alleles are reported. No phenotypic data is available. It has 6 annotated transcripts and 6 annotated polypeptides. Protein features are: BTB/POZ; BTB/POZ fold; BTB/POZ-like; Zinc finger, C2H2; Zinc finger, C2H2-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 12-24 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression in all larval and adult organs/tissues ranges from low to undetected. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult central nervous system, larval hindgut, larval salivary gland, larval trachea, adult testis, larval carcass. Gene sequence location is 2L:1651260..1704682.
External Summaries
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2012_01	References Carreira et al., 2011, BMC Dev. Biol. 11: 32 Sequence features HFA00292 HFA00509 BKN29914 BKN45751 HFA00485
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 22A5-22B1   Limits computationally determined from genome sequence between P{PZ}l(2)0411104111 and P{lacW}CG17646k11021
Experimentally Determined Cytological Location
Cytogenetic map Notes References 22A5-22A6   (determined by in situ hybridisation)   (Spradling et al., 1999) 22A3-22A4   22A4--6 22A5--6   (BDGP Project Members, 1994-1999)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\chinmo for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	gene_with_stop_codon_read_through ; SO:0000697 Stop-codon suppression (UAG) postulated (FBrf0210979, FlyBase analysis); supported by conservation of the extended ORF across Drosophila species (FBrf0202906). Gene model reviewed during 5.41
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) chinmo-RA FBtr0077878  NM_134766   4257   604 chinmo-RD FBtr0077877  NM_164430   6017   604 chinmo-RE FBtr0303933  NM_001201751   6318   840 chinmo-RF FBtr0303934  NM_164428   5037   840 chinmo-RG FBtr0303935  NM_164429   6035   604 chinmo-RH FBtr0307047     12383   604
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein chinmo-PA   FBpp0077546   62.2   604   7.93     NP_608610   AAF51352 chinmo-PD   FBpp0077545   62.2   604   7.93     NP_722719   AAN10454 chinmo-PE   FBpp0292932   87.1   840   5.14     NP_001188680   ADV36931 chinmo-PF   FBpp0292933   87.1   840   5.14     NP_722717   AAF51351 chinmo-PG   FBpp0292934   62.2   604   7.93     NP_722718   AAF51350 chinmo-PH   FBpp0297890   62.2   604   7.93
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • BTB/POZ-like (IPR000210) Zinc finger, C2H2 (IPR007087) BTB/POZ (IPR013069) BTB/POZ fold (IPR011333) Zinc finger, C2H2-like (IPR015880)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA141321   AA698690   AA802120   AE014134 AAF51350   AE014134 AAF51351   AE014134 AAF51352   AE014134 AAN10454   AE014134 ADV36931   AI531702   AI532631   AI532955   AI534107   AI534392   AI541915   AI542135   AI542654   AI542944   AW944371   AY060464 AAL25503   AY089699   BF489356   BF505172   BG633077   BG636480   BG637204   BG637206   BG637452   BG639488   BG639616   BG639834   BG639878   BG641388   BI172061   BI365266   BI372710   BI484727   BI566529   BI574294   BI632223   BI635432   BI636097   BI636277   BI637608   BI637987   BP540493   BP540494   BP543029   BP543030   BP543163   BP543164   BP543455   BP543456   BP543782   BP543783   BP543837   BP543838   BP544586   BP544587   BP544708   BP544709   BP544872   BP544873   BP545557   BP545558   BP546213   BP547545   BP548379   BP548625   BP549482   BP549781   BP549782   BP550329   BP550330   BP550634   BP550635   BP551927   BP552321   BP552322   BP552576   BP552577   BP553041   BP553042   BP556140   BP556141   BP556286   BP557497   BP557498   BP557930   BP557931   BP557965   BP557966   BP558997   BP558998   BP559301   BP559302   BT001697 AAN71452   BT050405   CK659221   CO153046   CO153984   CO154637   CO154742   CO155126   CO155867   CO155888   CO156631   CO177128   CO177159   CO177180   CO177219   CO177410   CO178368   CO187960   CO188342   CO190039   CO190080   CO196296   CO196679   CO262885   CO263822   CO264880   CO266026   CO267088   CO267212   CO267307   CO267745   CO268923   CO272039   CO272254   CO272680   CO272879   CO273049   CO273654   CO274100   CO276236   CO277474   CO277475   CO277997   CO278564   CO278602   CO278723   CO279178   CO279228   CO281111   CO281144   CO282415   CO285622   CO287867   CO290110   CO292462   CO292900   CO298041   CO298181   CO298896   CO298921   CO299701   CO300988   CO301765   CO301844   CO304477   CO304939   CO305062   CO306027   CO306243   CO307295   CO308727   CO309521   CO312198   CO312353   CO313326   CO313943   CO315067   CO315664   CO319836   CO320448   CO320525   CO321030   CO321780   CO322044   CO322376   CO322501   CO323863   CO324643   CO325208   CO327387   CO327422   CO327799   CO327933   CO327969   CO328474   CO329368   CO330350   CO330781   CO330974   CO330998   CO332151   CO332169   CO332815   CO334040   CO337075   CO337182   CO337694   CO339034   CO339202   CO340067   CZ484587   EC061883   EC064910   EC068710   EC073715   EC078649   EC078663   EC079304   EC083318   EC084025   EC085963   EC090402   EC198520   EC199297   EC200876   EC203246   EC205447   EC209289   EC210059   EC210067   EC216024   EC220384   EC225614   EC226376   EC230047   EC234444   EC235011   EC235356   EC244598   EC246783   EC247191   EC249343   EC251503   EC252839   EC252851   EC257760   EC263923   EC264721   G00530   GH941170   GH943033   GH943832   GH949165   GH956008   GH964104   GH964461   GH965372   GH976829   GH979713   GH980207   GH981250   GH983792
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q7KU09 Q8IGM8 Q9VQ30
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0086758    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0086758 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 12-24 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0086758 expression level Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    40 embryo 04-06hr    22 embryo 06-08hr    136 embryo 08-10hr    335 embryo 10-12hr    504 embryo 12-14hr    1277 embryo 14-16hr    3000 embryo 16-18hr    5257 embryo 18-20hr    7788 embryo 20-22hr    3239 embryo 22-24hr    3355 larva L1    1991 larva L2    932 larva L3 12hr old    684 larva L3 puffstage 1-2    255 larva L3 puffstage 3-6    596 larva L3 puffstage 7-9    397 white prepupae new    391 white prepupae 12hr    537 white prepupae 24hr    600 pupae 2d postWPP    543 pupae 3d postWPP    332 pupae 4d postWPP    335 adult male 01day    560 adult male 05day    982 adult male 30day    860 adult female 01day    66 adult female 05day    22 adult female 30day    29 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    40 embryo 04-06hr    22 embryo 06-08hr  (136) embryo 08-10hr  (335) embryo 10-12hr  (504) embryo 12-14hr  (1277) embryo 14-16hr  (3000) embryo 16-18hr  (5257) embryo 18-20hr  (7788) embryo 20-22hr  (3239) embryo 22-24hr  (3355) larva L1  (1991) larva L2  (932) larva L3 12hr old  (684) larva L3 puffstage 1-2  (255) larva L3 puffstage 3-6  (596) larva L3 puffstage 7-9  (397) white prepupae new  (391) white prepupae 12hr  (537) white prepupae 24hr  (600) pupae 2d postWPP  (543) pupae 3d postWPP  (332) pupae 4d postWPP  (335) adult male 01day  (560) adult male 05day  (982) adult male 30day  (860) adult female 01day    66 adult female 05day    22 adult female 30day    29 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    40 embryo 04-06hr    22 embryo 06-08hr    136 embryo 08-10hr    335 embryo 10-12hr    504 embryo 12-14hr    1277 embryo 14-16hr  (3000) embryo 16-18hr  (5257) embryo 18-20hr  (7788) embryo 20-22hr  (3239) embryo 22-24hr  (3355) larva L1  (1991) larva L2    932 larva L3 12hr old    684 larva L3 puffstage 1-2    255 larva L3 puffstage 3-6    596 larva L3 puffstage 7-9    397 white prepupae new    391 white prepupae 12hr    537 white prepupae 24hr    600 pupae 2d postWPP    543 pupae 3d postWPP    332 pupae 4d postWPP    335 adult male 01day    560 adult male 05day    982 adult male 30day    860 adult female 01day    66 adult female 05day    22 adult female 30day    29 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    40 embryo 04-06hr    22 embryo 06-08hr    136 embryo 08-10hr    335 embryo 10-12hr    504 embryo 12-14hr    1277 embryo 14-16hr    3000 embryo 16-18hr    5257 embryo 18-20hr    7788 embryo 20-22hr    3239 embryo 22-24hr    3355 larva L1    1991 larva L2    932 larva L3 12hr old    684 larva L3 puffstage 1-2    255 larva L3 puffstage 3-6    596 larva L3 puffstage 7-9    397 white prepupae new    391 white prepupae 12hr    537 white prepupae 24hr    600 pupae 2d postWPP    543 pupae 3d postWPP    332 pupae 4d postWPP    335 adult male 01day    560 adult male 05day    982 adult male 30day    860 adult female 01day    66 adult female 05day    22 adult female 30day    29 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    40 embryo 04-06hr    22 embryo 06-08hr    136 embryo 08-10hr    335 embryo 10-12hr    504 embryo 12-14hr    1277 embryo 14-16hr    3000 embryo 16-18hr    5257 embryo 18-20hr    7788 embryo 20-22hr    3239 embryo 22-24hr    3355 larva L1    1991 larva L2    932 larva L3 12hr old    684 larva L3 puffstage 1-2    255 larva L3 puffstage 3-6    596 larva L3 puffstage 7-9    397 white prepupae new    391 white prepupae 12hr    537 white prepupae 24hr    600 pupae 2d postWPP    543 pupae 3d postWPP    332 pupae 4d postWPP    335 adult male 01day    560 adult male 05day    982 adult male 30day    860 adult female 01day    66 adult female 05day    22 adult female 30day    29 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0086758 expression level Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    40 embryo 04-06hr    22 embryo 06-08hr    136 embryo 08-10hr    335 embryo 10-12hr    504 embryo 12-14hr    1277 embryo 14-16hr    3000 embryo 16-18hr    5257 embryo 18-20hr    7788 embryo 20-22hr    3239 embryo 22-24hr    3355 larva L1    1991 larva L2    932 larva L3 12hr old    684 larva L3 puffstage 1-2    255 larva L3 puffstage 3-6    596 larva L3 puffstage 7-9    397 white prepupae new    391 white prepupae 12hr    537 white prepupae 24hr    600 pupae 2d postWPP    543 pupae 3d postWPP    332 pupae 4d postWPP    335 adult male 01day    560 adult male 05day    982 adult male 30day    860 adult female 01day    66 adult female 05day    22 adult female 30day    29 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    40 embryo 04-06hr    22 embryo 06-08hr  136 embryo 08-10hr  (335) embryo 10-12hr  (504) embryo 12-14hr  (1277) embryo 14-16hr  (3000) embryo 16-18hr  (5257) embryo 18-20hr  (7788) embryo 20-22hr  (3239) embryo 22-24hr  (3355) larva L1  (1991) larva L2  (932) larva L3 12hr old  (684) larva L3 puffstage 1-2  (255) larva L3 puffstage 3-6  (596) larva L3 puffstage 7-9  (397) white prepupae new  (391) white prepupae 12hr  (537) white prepupae 24hr  (600) pupae 2d postWPP  (543) pupae 3d postWPP  (332) pupae 4d postWPP  (335) adult male 01day  (560) adult male 05day  (982) adult male 30day  (860) adult female 01day    66 adult female 05day    22 adult female 30day    29 Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    40 embryo 04-06hr    22 embryo 06-08hr    136 embryo 08-10hr    335 embryo 10-12hr    504 embryo 12-14hr    1277 embryo 14-16hr  (3000) embryo 16-18hr  (5257) embryo 18-20hr  (7788) embryo 20-22hr  (3239) embryo 22-24hr  (3355) larva L1  1991 larva L2    932 larva L3 12hr old    684 larva L3 puffstage 1-2    255 larva L3 puffstage 3-6    596 larva L3 puffstage 7-9    397 white prepupae new    391 white prepupae 12hr    537 white prepupae 24hr    600 pupae 2d postWPP    543 pupae 3d postWPP    332 pupae 4d postWPP    335 adult male 01day    560 adult male 05day    982 adult male 30day    860 adult female 01day    66 adult female 05day    22 adult female 30day    29 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    40 embryo 04-06hr    22 embryo 06-08hr    136 embryo 08-10hr    335 embryo 10-12hr    504 embryo 12-14hr    1277 embryo 14-16hr    3000 embryo 16-18hr    5257 embryo 18-20hr    7788 embryo 20-22hr    3239 embryo 22-24hr    3355 larva L1    1991 larva L2    932 larva L3 12hr old    684 larva L3 puffstage 1-2    255 larva L3 puffstage 3-6    596 larva L3 puffstage 7-9    397 white prepupae new    391 white prepupae 12hr    537 white prepupae 24hr    600 pupae 2d postWPP    543 pupae 3d postWPP    332 pupae 4d postWPP    335 adult male 01day    560 adult male 05day    982 adult male 30day    860 adult female 01day    66 adult female 05day    22 adult female 30day    29 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    40 embryo 04-06hr    22 embryo 06-08hr    136 embryo 08-10hr    335 embryo 10-12hr    504 embryo 12-14hr    1277 embryo 14-16hr    3000 embryo 16-18hr    5257 embryo 18-20hr    7788 embryo 20-22hr    3239 embryo 22-24hr    3355 larva L1    1991 larva L2    932 larva L3 12hr old    684 larva L3 puffstage 1-2    255 larva L3 puffstage 3-6    596 larva L3 puffstage 7-9    397 white prepupae new    391 white prepupae 12hr    537 white prepupae 24hr    600 pupae 2d postWPP    543 pupae 3d postWPP    332 pupae 4d postWPP    335 adult male 01day    560 adult male 05day    982 adult male 30day    860 adult female 01day    66 adult female 05day    22 adult female 30day    29 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0086758    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0086758 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression in all larval and adult organs/tissues ranges from low to undetected. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult central nervous system, larval hindgut, larval salivary gland, larval trachea, adult testis, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Heatmap Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body     Larval Salivary Gland no informative data Larval Trachea no informative data Larval Carcass no informative data Adult Head no informative data Adult Eye no informative data Adult Brain no informative data Adult Thoracic-Abdominal Ganglion no informative data Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland     Adult Heart no informative data Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis no informative data Adult Male Accessory Gland     Adult Carcass     modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0086758 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31666-RC;CG31666-RD;CT30433 FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for chinmo Stages(s) 1-3 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | recessive chinmo04111 chinmok13009 chinmok13909 chinmok14521a chinmoM33 chinmorN141 semi-lethal chinmo04111 Other Phenotypes Allele neuroanatomy defective | somatic clone chinmo1 Phenotype manifest in Allele larval mushroom body & neuroblast | somatic clone chinmo1 neuroblast | somatic clone chinmo1 pioneer neuron | somatic clone chinmoM33 chinmo1
Classical Alleles ( 15 )
For All Classical Alleles Show
Allele of chinmo Class Mutagen Stocks Known lesion chinmok13009 P-element activity 2 -- chinmoKG05386 2 -- chinmo5-HA-2872 1 -- chinmoe02558 1 -- chinmof02087 piggyBac transposase 1 -- chinmok13909 P-element activity 1 -- chinmoM33 ethyl methanesulfonate 1 Yes chinmoMB04995 1 -- chinmoNP2620 1 -- chinmo04111 P-element activity 0 -- chinmo1 0 -- chinmod06061 0 -- chinmok14521a P-element activity 0 -- chinmorN141 P-element activity 0 -- chinmounspecified 0 --
Alleles Carried on Transgenic Constructs ( 7 )
For All Alleles Carried on Transgenic Constructs Show
Allele of chinmo Class Mutagen Stocks Known lesion chinmoHM04048 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes chinmoHMS00036 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes chinmoJF02341 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes chinmo3'UTR.Scer\UAS in vitro construct - regulatory fusion 0 Yes chinmo5'UTR.Scer\UAS in vitro construct - regulatory fusion 0 Yes chinmoGD10323 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes chinmoScer\UAS.fl in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)ast1 (BDGP Project Members, 1994-1999) Df(2L)ast2 (Spradling et al., 1999, BDGP Project Members, 1994-1999) Df(2L)dp-79b (Spradling et al., 1999, BDGP Project Members, 1994-1999) Df(2L)Exel6005 (Ryder, 2004.4.26) Df(2L)S2 (Welte, 2000.2.23) In(2L)ast-1 (BDGP Project Members, 1994-1999)
Not disrupted in	Df(2L)S3 (Welte, 2000.2.23) Df(2R)59AD (BDGP Project Members, 1994-1999) Df(2R)bwVDe2LPxKR (BDGP Project Members, 1994-1999) Df(2R)bw-S46 (BDGP Project Members, 1994-1999)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10323} NA P{TRiP.HM04048} NA P{TRiP.HMS00036} NA P{TRiP.JF02341} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{lacW}chinmok13009 No P{lacW}chinmok13909 No P{lacW}chinmok14521a No P{lacW}l(2)SH1971SH1971 No P{PZ}chinmo04111 No P{PZ}chinmorN141 No insertion of enhancer trap binary system Mi{ET1}chinmoMB04995 No P{GawB}chinmoNP2620 No miscellaneous insertions P{RS5}chinmo5-HA-2872 NA P{SUPor-P}chinmoKG05386 NA PBac{RB}chinmoe02558 NA PBac{WH}chinmof02087 NA insertion of mobile activating element P{XP}chinmod06061 NA
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
dendrite morphogenesis inferred from mutant phenotype (Zhu and Lee, 2005) mushroom body development inferred from mutant phenotype (Zhu and Lee, 2005)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
sequence-specific DNA binding transcription factor activity inferred from sequence or structural similarity with bab2 AND inferred from sequence or structural similarity with br (FlyBase Genome Annotators, 2002-2003) zinc ion binding inferred from electronic annotation with InterPro:IPR007087, InterPro:IPR015880 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
intracellular inferred from electronic annotation with InterPro:IPR007087, InterPro:IPR015880 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	gene   gene_with_stop_codon_read_through (FlyBase Genome Annotators, 2010) nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions chinmo allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 59585 DroID - A comprehensive database of gene and protein interactions. • FBgn0086758 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33343
Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs	Dpse\chinmo
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL001739-PA Aedes aegypti (mosquito) AGAP008959-PA Anopheles gambiae (mosquito) BGIBMGA003094-PA Bombyx mori (silk worm) ENSMUSP00000109363 Mus musculus (house mouse) ENSOANP00000016081 Ornithorynchus anatinus (platypus) ENSORLP00000014619 Oryzias latipes (japanese killifish) PHUM002025-PA Pediculus humanus (human body louse) ENSTNIP00000010654 Tetraodon nigroviridis (green spotted pufferfish) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0221045 FBgn0194499 FBgn0116931 FBgn0092875
Stocks & Reagents
Stocks Listed in FlyBase ( 14 )
Bloomington	24737 w1118; Mi{ET1}chinmoMB04995 26777 y1 v1; P{TRiP.JF02341}attP2 31738 y1 v1; P{TRiP.HM04048}attP2 5587 chinmoM33 cn1 bw1 sp1/CyO 10440 y1 w67c23; P{lacW}chinmok13009/CyO 33638 y1 v1; P{TRiP.HMS00036}attP2/TM3, Sb1 14594 y1; P{SUPor-P}chinmoKG05386/CyO; ry506
Harvard	- PBac{RB}chinmoe02558 - PBac{WH}chinmof02087
Kyoto	125720 w1118; P{RS5}chinmo5-HA-2872 104261 w*; P{GawB}chinmoNP2620 / CyO 102903 y1 w67c23 ; P{lacW}chinmok13909 / CyO
	More stocks available...
Genomic Clones ( 1 )
	BACR19B15 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 189 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE59755 SD04616 SD06908
Other clones	FI04816
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT07346 AT25349 GH19718 GM03885 HL05482 LP16836 RE13990 RE50518 RE67870 RH23059 RH36203 SD01368 SD02940 SD03434 SD04204 SD06621 SD07202 SD07237 SD08244 SD09084 SD09466 SD12718 SD14206 SD15083 SD15086 SD15457 SD16784 SD17665 SD17910 SD19659 SD20218 SD25902
Other clones	54646 193663 CK01583 EK002816 EK007345 EK035308 EK039252 EK046057 EK046357 EK052601 EK052647 EK052711 EK052909 EK053407 EK056535 EK067008 EK073062 EK086638 EK093105 EK105709 EK106405 EK108031 EK108631 EK109351 EK111746 EK113144 EK120115 EK125221 EK125222 EK128064 EK130408 EK130538 EK131336 EK133719 EK133832 EK136535 EK140645 EK144731 EK148710 EK149120 EK149402 EK151648 EK156008 EK156046 EK160425 EK169705 EK171206 EK171657 EK174050 EK174120 EK176349 EK179842 EK182121 EK182314 EK186350 EK187107 EK188016 EK188248 EK191739 EK194430 EK195826 EK200235 EK201159 EK218311 EK228046 EK228531 EK232133 EK234341 EK238916 EK244754 EK246754 EK247210 EK250126 EK250610 EK254313 EK259213 EK262130 EK281007 EK284919 EK286003 EK290162 EK292706 EK295029 EK296153 EK296751 EK297203 EK302633 EK302659 EK304658 EK308730 EN01147 EN03237 EN04517 EN04716 EN05428 EN06863 EN06926 EN08438 EN13764 EN14006 EN15113 EP00649 EP01055 EP06903 EP06943 EP08046 EP08301 EP08341 EP09252 EP09952 FGA005A05 FGC018C05 FGC019A03 FGC020E11 FGC022D02 FGC022F08 FGC026F10 FGC027D01 FGC028C04 FGC031H12 FGH104A06 FGH118B01 FGH127B08 FGH129G08 FGM101G04 FGM103D10 FGM206E09 FGM208C04 FGM215F06 FGM218B01 FGM219E10 FGM222C03 FGM301F04 FGM302E08 FGM309F06 FGM312A06 FGM312C02 FGM318C06 FGM320B02 RP004086534 RP004189670 RP004207171 RP004232980 RP004242797 RP004246239 RP004247383 RP004255122 RP004269851 RP004309508 RP004492867 RP004503579 RP004508194 SD07880
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0086758 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33343
Antibody Information
	polyclonal (Flaherty et al., 2010)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG10871 CG17156 (FlyBase, 1996-) Source for merge of: CG10871 CG17649 (FlyBase Genome Annotators, 2002-2003) Source for merge of: chinmo l(2)04111 CG31666 (Zhu et al., 2006)
Additional comments	Annotations CG10871, CG17156 and CG17649 merged as CG31666 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003) Source for merge of CG10871 CG17156 was a shared cDNA (date:010720). (FlyBase, 1996-)
Other Comments
	chinmo is required in only one of the six fates of the Scer\GAL4[OK107]-positive central complex neurons. (Yu et al., 2009) Loss of chinmo causes various types of early-born neurons to adopt distinct late-born mushroom body neurons' projection patterns but exerts no effects on pupal-born mushroom body neurons. (Zhu and Lee, 2005)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_134766 NM_164428 NM_164429 NM_164430 NM_001201751 RefSeq (Proteins) • NP_608610 NP_722717 NP_722718 NP_722719 NP_001188680 DDBJ / EMBL / GenBank • AAF51350 AAF51351 AAF51352 AAL25503 AAN10454 AAN71452 ADV36931 AI532955 AW944371 AY060464 BI372710 BT001697 CZ484587 G00530 Entrez Gene - A searchable database of RefSeq genes. • 33343 UniProtKB/TrEMBL • Q7KU09 Q8IGM8 Q9VQ30
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • BTB/POZ-like (IPR000210) Zinc finger, C2H2 (IPR007087) BTB/POZ (IPR013069) BTB/POZ fold (IPR011333) Zinc finger, C2H2-like (IPR015880)
Linkouts
	BioGRID - A database of protein and genetic interactions • 59585 DroID - A comprehensive database of gene and protein interactions. • FBgn0086758 DRSC - Results from RNAi screens. • FBgn0086758 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0086758 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31666-RC;CG31666-RD;CT30433 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0086758 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33343 InParanoid A subset of ortholog calls from InParanoid. • AAEL001739-PA Aedes aegypti (mosquito) AGAP008959-PA Anopheles gambiae (mosquito) BGIBMGA003094-PA Bombyx mori (silk worm) ENSMUSP00000109363 Mus musculus (house mouse) ENSOANP00000016081 Ornithorynchus anatinus (platypus) ENSORLP00000014619 Oryzias latipes (japanese killifish) PHUM002025-PA Pediculus humanus (human body louse) ENSTNIP00000010654 Tetraodon nigroviridis (green spotted pufferfish) Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution • /genebrief/chinmo.htm InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33343 modMine - Data generated by the modENCODE project. • FBgn0086758 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0221045 FBgn0194499 FBgn0116931 FBgn0092875
Synonyms & Secondary IDs ( 12 )
Reported As
Symbol Synonym	CG10871 (Halfon et al., 2002, ) CG17156 (Siegmund and Lehmann, 2002, Misra, 2000.8.25, ) CG17649   CG31666 (Doe, 2006, Spokony and Restifo, 2007, Perkins et al., 2009.3.31, Otsuna and Ito, 2006, Magalhaes et al., 2007, Ostrin et al., 2006, Ni et al., 2008, Ni et al., 2010.12.1, Nairz et al., 2004) Chinmo (Zhu et al., 2006) chinmo (Doe, 2006, Weake et al., 2011, Yu et al., 2009, Flaherty et al., 2009, Flaherty et al., 2010, Cherbas et al., 2011, The modENCODE Consortium, 2010, The modENCODE Consortium, 2010) F (Welte, 2000.2.23) l(2)04111   unnamed (Treisman and Rubin, 1996)
Name Synonym	CG31666   Chinmo (Maurange et al., 2008) Chronologically inappropriate morphogenesis (Zhu et al., 2006) chronologically inappropriate morphogenesis (Zhu and Lee, 2005, Doe, 2006, Flaherty et al., 2010) lethal (2) 04111
Secondary FlyBase IDs
	FBgn0010566 FBgn0031353 FBgn0031354 FBgn0031355 FBgn0051666 FBgn0082597
References ( 48 )
Generate a list of	All references relating to this gene ( 48 )
List References by type	Research paper  ( 20 ) Supplementary material  ( 5 ) Review  ( 1 ) Personal communication to FlyBase  ( 10 ) Abstract  ( 1 ) FlyBase analysis  ( 5 ) Computer file  ( 4 ) Automatic genome annotation  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 4 )
	Carreira et al., 2011, BMC Dev. Biol. 11: 32 Genetic basis of wing morphogenesis in Drosophila: sexual dimorphism and non-allometric effects of shape variation. [FBrf0214273] Cherbas et al., 2011, Genome Res. 21(2): 301--314 The transcriptional diversity of 25 Drosophila cell lines. [FBrf0213077] Weake et al., 2011, Genes Dev. 25(14): 1499--1509 Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation. [FBrf0214372] Flaherty et al., 2010, Dev. Cell 18(4): 556--568 chinmo is a functional effector of the JAK/STAT pathway that regulates eye development, tumor formation, and stem cell self-renewal in Drosophila. [FBrf0210682] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2010 Show reviews ...