A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\sls

General Information
SymbolDmel\slsSpeciesD. melanogaster
NamesallimusAnnotation symbolCG1915
Feature typeprotein_coding_geneFlyBase IDFBgn0086906
Gene Model StatusCurrent Stock availability 23 publicly available
Also Known AsTitin, Ket, CG18242, D-titin, l(3)dre8, l(3)rL182, sam, l(3)62Ca, kettin
Genomic Location
Chromosome (arm)3LRecombination map3-
Cytogenetic map62C2-62C4Sequence location3L:2,040,179..2,115,611 [-]

Genomic Maps

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modENCODE GBrowse
detailed view
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Automatically generated summary

See sections below for more information
The gene sallimus is referred to in FlyBase by the symbol Dmel\sls (CG1915, FBgn0086906). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: actin binding; structural constituent of muscle. There is experimental evidence that it is involved in the biological process: myoblast fusion; mitotic chromosome condensation; locomotion; skeletal muscle tissue development; sarcomere organization; muscle attachment; sister chromatid cohesion; mesoderm development. 68 alleles are reported. The phenotypes of these alleles are annotated with: multicellular structure; organ system; anatomical structure; organelle; cytoplasmic part; non-connected developing system; adult segment; intracellular organelle; eo support cell; nucleus; intracellular non-membrane-bounded organelle; embryonic labral segment; organ system subdivision; cell cycle. It has 13 annotated transcripts and 13 annotated polypeptides. Protein features are: Fibronectin, type III; Immunoglobulin I-set; Immunoglobulin subtype; Immunoglobulin subtype 2; Immunoglobulin-like; Immunoglobulin-like fold; Protein of unknown function DUF1136; Ribonuclease H-like; Src homology-3 domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult crop, larval hindgut, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval midgut, adult hindgut, adult heart, adult male reproductive system, adult carcass. Gene sequence location is 3L:2040179..2115611.

hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
l(3)62Ca
Hemizygotes for seventeen of nineteen alleles die during the first larval instar; four of these show some escape into the second instar; two alleles cause lethality in the pupal-adult stage.
sls: sallimus (J.A. Kennison)
Dominant suppressor of the extra-sex-combs phenotype of heterozygous Pc alleles. Also suppresses the dominant extra-sex-combs phenotype of Pcl alleles.
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2012_01
Sequence features
FB2011_10
References
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
62C2-62C4  
Limits computationally determined from genome sequence between P{PZ}dlt04276 and P{PZ}slsrL182  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
62C-62C  
(determined by in situ hybridisation)  
62C1-62C2  
(determined by in situ hybridisation) 62C (determined by in situ hybridisation)  
62C1-62C2  
62C1-62C1  
62C1-62C3  
(determined by in situ hybridisation)  
62C-62C  
62C-62C  
61C1-61C2  
62C1-62C2  
(determined by in situ hybridisation) 62C3--4 (determined by in situ hybridisation)  
62C-62C  
(determined by in situ hybridisation)  
62C1-62C2  
62C1-62C2  
(determined by in situ hybridisation)  
62C-62C  
(determined by in situ hybridisation)  
62C-62C  
62C1-62C2  
(determined by in situ hybridisation)  
62C1-62C3  
(determined by in situ hybridisation)  
68B8-68F2  
(determined by in situ hybridisation)  
62C1-62C2  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\sls for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0309792 FBtr0309034 FBtr0304032 FBtr0304033 FBtr0309050 FBtr0309046 FBtr0309044 FBtr0309042 FBtr0309047 FBtr0309052 FBtr0309051 FBtr0309045 FBtr0072848 FBtr0309048 FBtr0309053 FBtr0309049 FBtr0309043 FBtr0110857 FBpp0072727 FBpp0301072 FBpp0301070 FBpp0301068 FBpp0301066 FBpp0301065 FBpp0301063 FBpp0301074 FBpp0301071 FBpp0301067 FBpp0301069 FBpp0301073 FBpp0301064 FBti0006132 FBti0066836 FBti0051044 FBti0139998 FBti0052365 FBti0021446 FBti0044456 FBti0068398 FBti0106805 FBti0050971 FBti0105026 FBti0099931 FBti0056440 FBti0103017 FBti0072110 FBti0008032 FBti0005077 FBti0045199 FBti0075849
Comments on Gene Model
Gene model reviewed during 5.40
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0072848
  15266
  4796
FBtr0309042
 
  17268
  4811
FBtr0309043
 
  56051
  18488
FBtr0309044
 
  55967
  18460
FBtr0309045
 
  54998
  18137
FBtr0309046
 
  47090
  15501
FBtr0309047
 
  54698
  18037
FBtr0309048
 
  48506
  15973
FBtr0309049
 
  49085
  16166
FBtr0309050
 
  47081
  15498
FBtr0309051
 
  54740
  18051
FBtr0309052
 
  32522
  10645
FBtr0309053
 
  46112
  15175
Additional Transcript Data & Comments
Reported size (kB)
18.0, 14.5 (northern blot)
11.5 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
sls-PA  
FBpp0072727  
540.7  
4796  
5.89  
sls-PD  
FBpp0301063  
542.5  
4811  
5.88  
 
 
sls-PE  
FBpp0301064  
2105.1  
18488  
4.66  
 
 
sls-PF  
FBpp0301065  
2101.7  
18460  
4.66  
 
 
sls-PG  
FBpp0301066  
2065.7  
18137  
4.66  
 
 
sls-PH  
FBpp0301067  
1762.1  
15501  
4.65  
 
 
sls-PI  
FBpp0301068  
2053.3  
18037  
4.66  
 
 
sls-PJ  
FBpp0301069  
1813.0  
15973  
4.70  
 
 
sls-PK  
FBpp0301070  
1846.4  
16166  
4.70  
 
 
sls-PL  
FBpp0301071  
1762.6  
15498  
4.65  
 
 
sls-PM  
FBpp0301072  
2055.9  
18051  
4.66  
 
 
sls-PN  
FBpp0301073  
1209.5  
10645  
4.81  
 
 
sls-PO  
FBpp0301074  
1726.6  
15175  
4.64  
 
 
Additional Polypeptide Data & Comments
Reported size (kDa)
4796 (aa); 540 (kD predicted)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
sls transcripts are first expressed at stage 11 in the mesoderm. They are expressed in most if not all muscles until the third instar larval stage. At stage 14, they are expressed in nearly all somatic, visceral, and pharyngeal muscles. Later they are expressed in muscle attachment sites.
sls transcripts are first detected in early stage 11 embryos. Expression is observed mainly in the hindgut and posterior midgut invagination. By late stage 11, expression is observed throughout the mesoderm and can be seen in the progenitors to the pharyngeal muscles and salivary glands. By stage 12,13, the mesodermal pattern has resolved into a parasegmental pattern. By stage 13,14, expression is present in both somatic and visceral mesoderm.
The 18kb sls transcript is a minor species observed on northern blots.
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
western blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
sls protein localizes to the nucleus during interphase and to the chromosomes during mitosis.
The protein is enriched at the membrane of fusion competent cells and primarily cytoplasmic in founder cells in the developing muscle system. In myotubes sls protein islocated near the points of contact with myoblasts.
Marker for
Subcellular Localization
CV Term
nucleus mitotic chromosome
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CR42860-RC CR42860-RA CR42860-RB sls-RL sls-RH sls-RF sls-RD sls-RI sls-RN sls-RM sls-RG sls-RA sls-RJ sls-RO sls-RK sls-RE
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0086906


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0086906
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0086906 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 22
embryo 04-06hr
 
 51
embryo 06-08hr
 
 137
embryo 08-10hr
 
 240
embryo 10-12hr
 
 165
embryo 12-14hr
 
 468
embryo 14-16hr
 
 1106
embryo 16-18hr
 
 1342
embryo 18-20hr
 
 1568
embryo 20-22hr
 
 846
embryo 22-24hr
 
 1080
larva L1
 
 601
larva L2
 
 738
larva L3 12hr old
 
 1437
larva L3 puffstage 1-2
 
 632
larva L3 puffstage 3-6
 
 862
larva L3 puffstage 7-9
 
 502
white prepupae new
 
 203
white prepupae 12hr
 
 207
white prepupae 24hr
 
 439
pupae 2d postWPP
 
 902
pupae 3d postWPP
 
 2464
pupae 4d postWPP
 
 2646
adult male 01day
 
 1898
adult male 05day
 
 1672
adult male 30day
 
 1419
adult female 01day
 
 1031
adult female 05day
 
 262
adult female 30day
 
 296
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 22
embryo 04-06hr
 
 51
embryo 06-08hr
 (137)
embryo 08-10hr
 (240)
embryo 10-12hr
 (165)
embryo 12-14hr
 (468)
embryo 14-16hr
 (1106)
embryo 16-18hr
 (1342)
embryo 18-20hr
 (1568)
embryo 20-22hr
 (846)
embryo 22-24hr
 (1080)
larva L1
 (601)
larva L2
 (738)
larva L3 12hr old
 (1437)
larva L3 puffstage 1-2
 (632)
larva L3 puffstage 3-6
 (862)
larva L3 puffstage 7-9
 (502)
white prepupae new
 (203)
white prepupae 12hr
 (207)
white prepupae 24hr
 (439)
pupae 2d postWPP
 (902)
pupae 3d postWPP
 (2464)
pupae 4d postWPP
 (2646)
adult male 01day
 (1898)
adult male 05day
 (1672)
adult male 30day
 (1419)
adult female 01day
 (1031)
adult female 05day
 (262)
adult female 30day
 (296)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 22
embryo 04-06hr
 
 51
embryo 06-08hr
 
 137
embryo 08-10hr
 
 240
embryo 10-12hr
 
 165
embryo 12-14hr
 
 468
embryo 14-16hr
 
 1106
embryo 16-18hr
 
 1342
embryo 18-20hr
 (1568)
embryo 20-22hr
 
 846
embryo 22-24hr
 
 1080
larva L1
 
 601
larva L2
 
 738
larva L3 12hr old
 1437
larva L3 puffstage 1-2
 
 632
larva L3 puffstage 3-6
 
 862
larva L3 puffstage 7-9
 
 502
white prepupae new
 
 203
white prepupae 12hr
 
 207
white prepupae 24hr
 
 439
pupae 2d postWPP
 
 902
pupae 3d postWPP
 (2464)
pupae 4d postWPP
 (2646)
adult male 01day
 (1898)
adult male 05day
 (1672)
adult male 30day
 1419
adult female 01day
 
 1031
adult female 05day
 
 262
adult female 30day
 
 296
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 22
embryo 04-06hr
 
 51
embryo 06-08hr
 
 137
embryo 08-10hr
 
 240
embryo 10-12hr
 
 165
embryo 12-14hr
 
 468
embryo 14-16hr
 
 1106
embryo 16-18hr
 
 1342
embryo 18-20hr
 
 1568
embryo 20-22hr
 
 846
embryo 22-24hr
 
 1080
larva L1
 
 601
larva L2
 
 738
larva L3 12hr old
 
 1437
larva L3 puffstage 1-2
 
 632
larva L3 puffstage 3-6
 
 862
larva L3 puffstage 7-9
 
 502
white prepupae new
 
 203
white prepupae 12hr
 
 207
white prepupae 24hr
 
 439
pupae 2d postWPP
 
 902
pupae 3d postWPP
 
 2464
pupae 4d postWPP
 
 2646
adult male 01day
 
 1898
adult male 05day
 
 1672
adult male 30day
 
 1419
adult female 01day
 
 1031
adult female 05day
 
 262
adult female 30day
 
 296
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 22
embryo 04-06hr
 
 51
embryo 06-08hr
 
 137
embryo 08-10hr
 
 240
embryo 10-12hr
 
 165
embryo 12-14hr
 
 468
embryo 14-16hr
 
 1106
embryo 16-18hr
 
 1342
embryo 18-20hr
 
 1568
embryo 20-22hr
 
 846
embryo 22-24hr
 
 1080
larva L1
 
 601
larva L2
 
 738
larva L3 12hr old
 
 1437
larva L3 puffstage 1-2
 
 632
larva L3 puffstage 3-6
 
 862
larva L3 puffstage 7-9
 
 502
white prepupae new
 
 203
white prepupae 12hr
 
 207
white prepupae 24hr
 
 439
pupae 2d postWPP
 
 902
pupae 3d postWPP
 
 2464
pupae 4d postWPP
 
 2646
adult male 01day
 
 1898
adult male 05day
 
 1672
adult male 30day
 
 1419
adult female 01day
 
 1031
adult female 05day
 
 262
adult female 30day
 
 296
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0086906 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 22
embryo 04-06hr
 
 51
embryo 06-08hr
 
 137
embryo 08-10hr
 
 240
embryo 10-12hr
 
 165
embryo 12-14hr
 
 468
embryo 14-16hr
 
 1106
embryo 16-18hr
 
 1342
embryo 18-20hr
 
 1568
embryo 20-22hr
 
 846
embryo 22-24hr
 
 1080
larva L1
 
 601
larva L2
 
 738
larva L3 12hr old
 
 1437
larva L3 puffstage 1-2
 
 632
larva L3 puffstage 3-6
 
 862
larva L3 puffstage 7-9
 
 502
white prepupae new
 
 203
white prepupae 12hr
 
 207
white prepupae 24hr
 
 439
pupae 2d postWPP
 
 902
pupae 3d postWPP
 
 2464
pupae 4d postWPP
 
 2646
adult male 01day
 
 1898
adult male 05day
 
 1672
adult male 30day
 
 1419
adult female 01day
 
 1031
adult female 05day
 
 262
adult female 30day
 
 296
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 22
embryo 04-06hr
 
 51
embryo 06-08hr
 137
embryo 08-10hr
 (240)
embryo 10-12hr
 (165)
embryo 12-14hr
 (468)
embryo 14-16hr
 (1106)
embryo 16-18hr
 (1342)
embryo 18-20hr
 (1568)
embryo 20-22hr
 (846)
embryo 22-24hr
 (1080)
larva L1
 (601)
larva L2
 (738)
larva L3 12hr old
 (1437)
larva L3 puffstage 1-2
 (632)
larva L3 puffstage 3-6
 (862)
larva L3 puffstage 7-9
 (502)
white prepupae new
 (203)
white prepupae 12hr
 (207)
white prepupae 24hr
 (439)
pupae 2d postWPP
 (902)
pupae 3d postWPP
 (2464)
pupae 4d postWPP
 (2646)
adult male 01day
 (1898)
adult male 05day
 (1672)
adult male 30day
 (1419)
adult female 01day
 (1031)
adult female 05day
 (262)
adult female 30day
 (296)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 22
embryo 04-06hr
 
 51
embryo 06-08hr
 
 137
embryo 08-10hr
 
 240
embryo 10-12hr
 
 165
embryo 12-14hr
 
 468
embryo 14-16hr
 
 1106
embryo 16-18hr
 
 1342
embryo 18-20hr
 1568
embryo 20-22hr
 
 846
embryo 22-24hr
 
 1080
larva L1
 
 601
larva L2
 
 738
larva L3 12hr old
 1437
larva L3 puffstage 1-2
 
 632
larva L3 puffstage 3-6
 
 862
larva L3 puffstage 7-9
 
 502
white prepupae new
 
 203
white prepupae 12hr
 
 207
white prepupae 24hr
 
 439
pupae 2d postWPP
 
 902
pupae 3d postWPP
 2464
pupae 4d postWPP
 (2646)
adult male 01day
 1898
adult male 05day
 1672
adult male 30day
 1419
adult female 01day
 
 1031
adult female 05day
 
 262
adult female 30day
 
 296
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 22
embryo 04-06hr
 
 51
embryo 06-08hr
 
 137
embryo 08-10hr
 
 240
embryo 10-12hr
 
 165
embryo 12-14hr
 
 468
embryo 14-16hr
 
 1106
embryo 16-18hr
 
 1342
embryo 18-20hr
 
 1568
embryo 20-22hr
 
 846
embryo 22-24hr
 
 1080
larva L1
 
 601
larva L2
 
 738
larva L3 12hr old
 
 1437
larva L3 puffstage 1-2
 
 632
larva L3 puffstage 3-6
 
 862
larva L3 puffstage 7-9
 
 502
white prepupae new
 
 203
white prepupae 12hr
 
 207
white prepupae 24hr
 
 439
pupae 2d postWPP
 
 902
pupae 3d postWPP
 
 2464
pupae 4d postWPP
 
 2646
adult male 01day
 
 1898
adult male 05day
 
 1672
adult male 30day
 
 1419
adult female 01day
 
 1031
adult female 05day
 
 262
adult female 30day
 
 296
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 22
embryo 04-06hr
 
 51
embryo 06-08hr
 
 137
embryo 08-10hr
 
 240
embryo 10-12hr
 
 165
embryo 12-14hr
 
 468
embryo 14-16hr
 
 1106
embryo 16-18hr
 
 1342
embryo 18-20hr
 
 1568
embryo 20-22hr
 
 846
embryo 22-24hr
 
 1080
larva L1
 
 601
larva L2
 
 738
larva L3 12hr old
 
 1437
larva L3 puffstage 1-2
 
 632
larva L3 puffstage 3-6
 
 862
larva L3 puffstage 7-9
 
 502
white prepupae new
 
 203
white prepupae 12hr
 
 207
white prepupae 24hr
 
 439
pupae 2d postWPP
 
 902
pupae 3d postWPP
 
 2464
pupae 4d postWPP
 
 2646
adult male 01day
 
 1898
adult male 05day
 
 1672
adult male 30day
 
 1419
adult female 01day
 
 1031
adult female 05day
 
 262
adult female 30day
 
 296
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0086906


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0086906
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult crop, larval hindgut, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval midgut, adult hindgut, adult heart, adult male reproductive system, adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Heatmap
Tissue   Expression Level
Larval Central Nervous System no informative data
Larval Midgut no informative data
Larval Hindgut no informative data
Larval Malpighian Tubules no informative data
Larval Fat Body
 
 
Larval Salivary Gland no informative data
Larval Trachea no informative data
Larval Carcass no informative data
Adult Head no informative data
Adult Eye no informative data
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop no informative data
Adult Midgut no informative data
Adult Hindgut no informative data
Adult Malpighian Tubules no informative data
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart no informative data
Adult VirginFemale Spermatheca no informative data
Adult InseminatedFemale Spermatheca no informative data
Adult Ovary
 
 
Adult Testis no informative data
Adult Male Accessory Gland no informative data
Adult Carcass no informative data

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyExpress - Embryonic expression images (BDGP data)
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
indirect flight muscle & myofibril
indirect flight muscle & striated muscle thick filament
indirect flight muscle & Z disc
mitosis & nuclear chromosome
mitosis & nuclear chromosome (with sls110ry-)
mitosis & nuclear chromosome (with slse4)
mitosis & nuclear chromosome (with slsg65)
mitosis & nuclear chromosome (with slsj1D7)
muscle fiber & nucleus & embryo
hide Classical Alleles ( 65 )
For All Classical Alleles Show

Allele of slsClassMutagenStocksKnown lesion
sls12 --
slsj1D7loss of function allele2 Yes
slsKG009812 --
slsc032421 --
slsc050201 --
slsd00134
1 --
slsd075871 --
slsDG10710
1 --
slse027361 --
slsf03023
1 --
slsf031421 --
slsf054521 --
slsMI01406
1 --
slsrL1821 Yes
sls04860a0 Yes
sls110ry-0 Yes
sls136ry+0 Yes
sls136ry-0 Yes
sls62Ca-100 --
sls62Ca-110 --
sls62Ca-120 --
sls62Ca-130 --
sls62Ca-140 --
sls62Ca-150 --
sls62Ca-160 --
sls62Ca-170 --
sls62Ca-180 --
sls62Ca-190 --
sls62Ca-10 --
sls62Ca-20 --
sls62Ca-30 --
sls62Ca-40 --
sls62Ca-50 --
sls62Ca-60 --
sls62Ca-70 --
sls62Ca-80 --
sls62Ca-90 --
slsB1700 --
slsB1730 --
slsB2470 --
slsB680 --
slsC1380 --
slsC8720 --
slsC9950 --
slsCA067440 Yes
slse220 --
slse4hypomorphic allele - genetic evidence0 --
slse800 --
slse820 --
slse830 --
slse900 --
slsEP31190 Yes
slsg05hypomorphic allele - genetic evidence
0 --
slsg270 --
slsg320 --
slsG530 Yes
slsg650 --
slsg720 --
slsKet-132hypomorphic allele - genetic evidence0 Yes
slsKet-14loss of function allele0 Yes
slsKet-5hypomorphic allele - genetic evidence0 Yes
slsS0002010 Yes
slsS002001hypomorphic allele - genetic evidence0 --
slsunspecified
0 --
slsZCL2144
0 Yes
hide Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show

Allele of slsClassMutagenStocksKnown lesion
slsGD96804 Yes
slsJF010981 Yes
slsJF010991 Yes
hide Aneuploid Aberrations
Disrupted in
Not disrupted in
Duplicated in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
hide Gene Ontology: Function, Process & Cellular Component ( 17 unique terms )
hide Terms Based on Experimental Evidence ( 14 terms )
Molecular Function
CV term
References
inferred from direct assay
(assigned by UniProtKB)
inferred from mutant phenotype
(assigned by UniProtKB)
inferred from mutant phenotype
(assigned by UniProtKB)
Biological Process
CV term
References
inferred from mutant phenotype
(assigned by UniProtKB)
inferred from expression pattern
inferred from mutant phenotype
(assigned by UniProtKB)
inferred from mutant phenotype
inferred from genetic interaction with Mlp84B
inferred from mutant phenotype
(assigned by UniProtKB)
inferred from mutant phenotype
(assigned by UniProtKB)
inferred from mutant phenotype
(assigned by UniProtKB)
Cellular Component
CV term
References
inferred from direct assay
(assigned by UniProtKB)
inferred from direct assay
inferred from direct assay
(assigned by UniProtKB)
inferred from direct assay
inferred from direct assay
(assigned by UniProtKB)
inferred from mutant phenotype
(assigned by UniProtKB)
hide Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity with UniProtKB:Q10466
Biological Process
CV term
References
Cellular Component ( 0 terms)
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
sls allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
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hide Stocks Listed in FlyBase ( 23 )
Harvard
VDRC
hide Genomic Clones ( 3 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 287 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Other Information
hide Discoverer
Kennison, 1984.
 
hide Etymology
'sallimus' is Finnish for 'fate'.
Named 'Kettin' after the German word 'Kette', meaning 'chain'.
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for identity of: Titin CG1915
Source for database merge of
Source for merge of: Ket l(3)rL182 l(3)62Ca
Source for merge of: Ket Titin
Source for merge of: sls CG18242
Source for merge of: sls CG18857
Source for merge of: sls Ket
Source for merge of: sls l(3)S002001
Additional comments
FlyBase curator comment: Correspondence with author Sparrow confirmed that 'Salimus' is identical to 'sallimus' (CG1915).
Annotations CG1915, CG18242 and CG18857 merged as CG1915 in release 3 of the genome annotation.
hide Other Comments
ChEST reveals this is a target of Mef2.
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
sls may be involved in the morphogenesis of leg imaginal discs, and it is necessary for condensation and separation of sister chromatids during mitosis.
sls along with bt protein may determine most of the high passive stiffness of the indirect flight muscle that is necessary for stretch activation.
sls is essential for the formation and maintenance of normal sarcomere structure of muscles and muscle tendons.
Mutations in sls result in chromosome undercondensation, chromosome breakage, loss of diploidy and premature sister chromatid separation. Mutants also have defects in myoblast fusion and muscle organisation.
sls has a role in myoblast fusion during myogenesis and later serves to organise myofilaments into the highly ordered arrays underlying skeletal muscle striation.
maps to clone: DS07136
Identification: Via an autoimmune serum from a scleroderma patient. During embryogenesis, sls RNA and protein accumulate in all the somatic and visceral muscles. Antisera made against two different domains of sls localize this portion of the protein to the Z-discs of both larval visceral and adult thoracic muscles by confocal microscopy.
sls has been cloned and its expression pattern has been analysed. Isolated from a genomic library using human autoimmune scleroderma serum that identifies a chromosomal protein in human cells and Drosophila embryos.
Identified in a screen for modifiers of the Dfd13/Dfd3 mutant phenotype. Shows no interaction with the Pc mutant phenotype.
sls encodes a mitotic chromosomal epitope and is expressed in the somatic musculature during late embryogenesis.
sls encodes a mitotic chromosomal epitope.
Isolated from a screen of a cDNA expression library with a human CREST serum.
sls is required for the function of other homeotic genes.
Sections of the Scr regulatory region may be important for regulation of Scr by Polycomb- and trithorax-group genes.
Mutations of sls interact with Dfd to reduce the viability of the Dfd3/Dfd13 combination.
Identified as the gene encoding the epitope for a monoclonal antibody, MAC155, that recognises the Z-discs of Drosophila and Lethocerus. The encoded protein may act as scaffolding in the Z-disc.
Recessive lethal mutations in this complementation group were identified by failure to complement the recessive lethality of Df(3L)R-R2.
sls is one of the 18 loci identified in a screen for dominant modifiers of Pc and/or Antp phenotypes.
Hemizygotes for seventeen of nineteen alleles die during the first larval instar; four of these show some escape into the second instar; two alleles cause lethality in the pupal-adult stage.
 
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
REDfly - A database of transcriptional regulatory elements.
hide Synonyms & Secondary IDs ( 39 )
Reported As
Symbol Synonym
anon-CREST
 
CG18245
 
CG18857
 
MCP
 
Name Synonym
Dtitin
lethal(3)62Ca
 
lethal (3) S002001
 
Mitotic Chromosomal Protein
 
Secondary FlyBase IDs
  • FBgn0002186
  • FBgn0003432
  • FBgn0010396
  • FBgn0010850
  • FBgn0011512
  • FBgn0015898
  • FBgn0020409
  • FBgn0024279
  • FBgn0028238
  • FBgn0035301
  • FBgn0035302
  • FBgn0042183
hide References ( 160 )
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List References by type
hide Recent research papers ( 7 )
Texada et al., 2011, Exp. Cell Res. 317(4): 474--487
Tropomyosin is an interaction partner of the Drosophila coiled coil protein Yuri Gagarin. [FBrf0212786]
Bulchand et al., 2010, J. Cell Sci. 123(16): 2697--2707
Muscle wasted: a novel component of the Drosophila histone locus body required for muscle integrity. [FBrf0211459]
Dialynas et al., 2010, Development 137(18): 3067--3077
The role of Drosophila Lamin C in muscle function and gene expression. [FBrf0211601]
Kim et al., 2010, Exp. Gerontol. 45(7-8): 611--620
Gene expression profiling implicates OXPHOS complexes in lifespan extension of flies over-expressing a small mitochondrial chaperone, Hsp22. [FBrf0210880]
Langer et al., 2010, PLoS ONE 5(1): e8928
In Vivo RNAi Rescue in Drosophila melanogaster with Genomic Transgenes from Drosophila pseudoobscura. [FBrf0209864]
Perkins et al., 2010, Dev. Biol. 338(1): 15--27
Integrin-mediated adhesion maintains sarcomeric integrity. [FBrf0215081]
Schnorrer et al., 2010, Nature 464(7286): 287--291
Systematic genetic analysis of muscle morphogenesis and function in Drosophila. [FBrf0210226]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010