A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dper\GL24409

General Information
SymbolDper\GL24409SpeciesD. persimilis
NameAnnotation symbolGL24409
Feature typeprotein_coding_geneFlyBase IDFBgn0161998
Gene Model StatusCurrent Stock availability None publicly available
Genomic Location
Chromosome (arm)scaffold_0Recombination map
Cytogenetic mapSequence locationscaffold_0:9,583,665..9,587,068 [+]

Genomic Maps

detailed view FBgn0161997 FBgn0161998 FBgn0160717 FBgn0161999 FBgn0162000
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Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol Dper\GL24409 (GL24409, FBgn0161998). It is a protein_coding_gene from Drosophila persimilis. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has one annotated transcript and one annotated polypeptide. Gene sequence location is scaffold_0:9583665..9587068.
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2012_01
FB2011_10
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
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Please see the GBrowse view of Dper\GL24409 for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBgn0161998 FBgn0160717 FBgn0161999 FBpp0188516 FBpp0187234 FBpp0188517
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0190024
  1710
  569
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0188516  
63.5  
569  
8.98  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
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Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
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Linkouts
hide Alleles & Phenotypes
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Phenotype manifest in
Allele
hide Classical Alleles ( 0 )
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Allele of Dper\GL24409ClassMutagenStocksKnown lesion
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For All Alleles Carried on Transgenic Constructs Show

Allele of Dper\GL24409ClassMutagenStocksKnown lesion
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Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
hide Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
hide Terms Based on Experimental Evidence ( 0 terms )
hide Terms Based on Predictions or Assertions ( 0 terms )
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Protein-protein
Interacting group
Assay
References
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Interacts with
Please look at the allele data for full details of the genetic interactions
Dper\GL24409 allele
Gene
References
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Linkouts
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Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
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hide Stocks Listed in FlyBase ( 0 )
hide Genomic Clones ( 0 )
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Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
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Linkouts
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Source for database identity of
Source for database merge of
Additional comments
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Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
Linkouts
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym
Name Synonym
Secondary FlyBase IDs
hide References ( 2 )
Research paper
Drosophila 12 Genomes Consortium et al., 2007, Nature 450(7167): 203--218
Evolution of genes and genomes on the Drosophila phylogeny. [FBrf0200326]
Personal communication to FlyBase
Drosophila 12 Genomes Consortium, 2008, personal communication to FlyBase
Symbols and class of gene information for the GLEANR consensus sequences of the 11 sequenced non-melanogaster Drosophila species (Drosophila ananassae, erecta, grimshawi, mojavensis, persimilis, pseudoobscura, sechellia, simulans, willistoni, virilis and yakuba). [FBrf0202436]