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Gene Dmel\Snap

General Information
Symbol	Dmel\Snap	Species	D. melanogaster
Name	Soluble NSF attachment protein	Annotation symbol	CG6625
Feature type	protein_coding_gene	FlyBase ID	FBgn0250791
Gene Model Status	Current	Stock availability	9 publicly available
Also Known As	α-SNAP, dSNAP
Genomic Location
Chromosome (arm)	3L	Recombination map	3-
Cytogenetic map	77B3-77B9	Sequence location	3L:20,306,732..20,309,677 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Soluble NSF attachment protein is referred to in FlyBase by the symbol Dmel\Snap (CG6625, FBgn0250791). It is a protein_coding_gene from Drosophila melanogaster. It is reported to have molecular function: soluble NSF attachment protein activity. There is experimental evidence that it is involved in the biological process: synaptic transmission; imaginal disc-derived wing expansion; neuron projection morphogenesis; intra-Golgi vesicle-mediated transport; cytokinesis; compound eye morphogenesis; intracellular protein transport; phagocytosis, engulfment. 19 alleles are reported. The phenotypes of these alleles are annotated with: tracheal branch primordium; embryonic/first instar larval cuticle; eye; bouton; embryonic/larval neuromuscular junction; wing; Golgi apparatus. It has one annotated transcript and one annotated polypeptide. Protein features are: NSF attachment protein; Tetratricopeptide repeat; Tetratricopeptide-like helical. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in adult male stages. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult crop, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval salivary gland, adult spermathecae, adult male accessory gland, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1632291_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Snap. Gene sequence location is 3L:20306732..20309677.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 77B3-77B9   Limits computationally determined from genome sequence between P{lacW}l(3)L1243L1243&P{lacW}Mi-2j3D4 and P{PZ}eRF100103; Left limit from inclusion within Df(3L)th2 (FBrf0123112) Right limit from non-inclusion within Df(3L)st62 (FBrf0123112)
Experimentally Determined Cytological Location
Cytogenetic map Notes References 77B-77B   Determined by comparing Celera genomic sequence with sequence from BDGP BAC and P1 clones.   (Lloyd et al., 2000) 77B1-77B4     (Ordway, 1994.5.4)
Experimentally Determined Recombination Data
Location	3- (Ordway, 1994.5.4)
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Snap for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45 Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated Low-frequency RNA-seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Snap-RA FBtr0074840  NM_079456   2070   292
Additional Transcript Data & Comments
Reported size (kB)	2.3, 1.9, 1.5 (northern blot) (Ordway et al., 1994)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Snap-PA   FBpp0074609   33.0   292   5.12     NP_524180   AAF49035
Additional Polypeptide Data & Comments
Reported size (kDa)	292 (aa) (Ordway et al., 1994)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • NSF attachment protein (IPR000744) Tetratricopeptide-like helical (IPR011990) Tetratricopeptide repeat (IPR019734)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201929   AA392604   AA441680   AA536479   AA695107   AA735597   AE014296 AAF49035   AI061963   AI108951   AI135382   AI135584   AI260194   AI260575   AI293764   AI297504   AI455172   AI516993   AI518024   AI518641   AI519682   AI947007   AX093947   AY069477 AAL39622   BF490731   BF500004   BG632717   BG636250   BG639198   BI171072   BI172366   BI173667   BI214468   BI228803   BI228889   BI229575   BI231439   BI240019   BI358521   BI361550   BI362585   BI364596   BI367277   BI367330   BI367449   BI369400   BI481947   BI486554   BI486600   BI564631   BI574658   BI574762   BI578175   BI578244   BI578338   BI578421   BI579202   BI579768   BI579835   BI605002   BI605903   BI619235   BI622501   BI626324   BI633872   BP546869   BP553130   CA804968   CK657193   CL527958   CO179569   CO183020   CO195077   CO269881   CO272325   CO280349   CO284410   CO293748   CO300006   CO301555   CO310944   CO314107   CO331381   CZ487336   CZ487337   EC069961   EC071822   EC088369   EC201324   EC202825   EC213492   EC220083   EC222216   EC224028   EC228048   EC234232   EC235499   EC243148   EV595635   GH754534   GH755319   GH759776   GH781225   GH782084   GH785555   GH791942   GH794296   GH795679   GH799584   GH801653   GH804674   GH808691   GH810968   GH823426   GH823918   GH838508   GH840299   GH844556   GH844975   GH855874   GH858152   GH861222   GH862410   GH865121   GH867160   GH870352   GH871722   GH873120   GH874013   GH874413   GH880390   GH881571   GH884202   GH888081   GH898873   GH902541   GH904775   GH907224   GH908920   GH911677   GH914207   GH914516   GH914588   GH914716   GH919365   GH922545   GH923636   GH926198   GH926894   GH927611   GH931275   GH932968   GH936214   GH937073   GH937244   GH938511   U09374 AAA83414
UniProtKB/Swiss-Prot	Q23983
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage | late   presumptive embryonic/larval central nervous system   (Ordway et al., 1994) embryonic stage 13 -- 16   embryonic brain   (Fisher et al., 2012) embryonic/larval nervous system   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012) larval stage     (Ordway et al., 1994) adult stage     (Ordway et al., 1994)
Additional Descriptive Data
	Snap transcripts are detected in RNA from larvae and adults on northern blots. In situ hybridization in embryos shows expression in the CNS. (Ordway et al., 1994)
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
axon terminus inferred from direct assay (Babcock et al., 2004) cytoplasmic vesicle inferred from direct assay (assigned by UniProtKB) (Stuart et al., 2007) membrane inferred from direct assay (assigned by UniProtKB) (Stuart et al., 2007) colocalizes_with SNARE complex inferred from direct assay (Guruharsha et al., 2011)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult crop, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval salivary gland, adult spermathecae, adult male accessory gland, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    644.2 Larval Midgut    80.7 Larval Hindgut    120.2 Larval Malpighian Tubules    222.8 Larval Fat Body    150.4 Larval Salivary Gland    105.1 Larval Trachea    73.275 Larval Carcass    92.175 Adult Head    954 Adult Eye    648.025 Adult Brain    2057.5 Adult Thoracic-Abdominal Ganglion    2365.9 Adult Crop    206.1 Adult Midgut    79.6 Adult Hindgut    152.8 Adult Malpighian Tubules    192.2 Adult Fat Body    85.9 Adult Salivary Gland    91.6 Adult Heart    131.4 Adult VirginFemale Spermatheca    196.4 Adult InseminatedFemale Spermatheca    171.1 Adult Ovary    36.1 Adult Testis    19.9 Adult Male Accessory Gland    167.1 Adult Carcass    138.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (644.2) Larval Midgut    80.7 Larval Hindgut    120.2 Larval Malpighian Tubules    222.8 Larval Fat Body    150.4 Larval Salivary Gland    105.1 Larval Trachea    73.275 Larval Carcass    92.175 Adult Head  (954) Adult Eye  (648.025) Adult Brain  (2057.5) Adult Thoracic-Abdominal Ganglion  (2365.9) Adult Crop    206.1 Adult Midgut    79.6 Adult Hindgut    152.8 Adult Malpighian Tubules    192.2 Adult Fat Body    85.9 Adult Salivary Gland    91.6 Adult Heart    131.4 Adult VirginFemale Spermatheca    196.4 Adult InseminatedFemale Spermatheca    171.1 Adult Ovary    36.1 Adult Testis    19.9 Adult Male Accessory Gland    167.1 Adult Carcass    138.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    644.2 Larval Midgut    80.7 Larval Hindgut    120.2 Larval Malpighian Tubules    222.8 Larval Fat Body    150.4 Larval Salivary Gland    105.1 Larval Trachea    73.275 Larval Carcass    92.175 Adult Head    954 Adult Eye    648.025 Adult Brain  (2057.5) Adult Thoracic-Abdominal Ganglion  (2365.9) Adult Crop    206.1 Adult Midgut    79.6 Adult Hindgut    152.8 Adult Malpighian Tubules    192.2 Adult Fat Body    85.9 Adult Salivary Gland    91.6 Adult Heart    131.4 Adult VirginFemale Spermatheca    196.4 Adult InseminatedFemale Spermatheca    171.1 Adult Ovary    36.1 Adult Testis    19.9 Adult Male Accessory Gland    167.1 Adult Carcass    138.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    644.2 Larval Midgut    80.7 Larval Hindgut    120.2 Larval Malpighian Tubules    222.8 Larval Fat Body    150.4 Larval Salivary Gland    105.1 Larval Trachea    73.275 Larval Carcass    92.175 Adult Head    954 Adult Eye    648.025 Adult Brain    2057.5 Adult Thoracic-Abdominal Ganglion    2365.9 Adult Crop    206.1 Adult Midgut    79.6 Adult Hindgut    152.8 Adult Malpighian Tubules    192.2 Adult Fat Body    85.9 Adult Salivary Gland    91.6 Adult Heart    131.4 Adult VirginFemale Spermatheca    196.4 Adult InseminatedFemale Spermatheca    171.1 Adult Ovary    36.1 Adult Testis    19.9 Adult Male Accessory Gland    167.1 Adult Carcass    138.7 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    644.2 Larval Midgut    80.7 Larval Hindgut    120.2 Larval Malpighian Tubules    222.8 Larval Fat Body    150.4 Larval Salivary Gland    105.1 Larval Trachea    73.275 Larval Carcass    92.175 Adult Head    954 Adult Eye    648.025 Adult Brain    2057.5 Adult Thoracic-Abdominal Ganglion    2365.9 Adult Crop    206.1 Adult Midgut    79.6 Adult Hindgut    152.8 Adult Malpighian Tubules    192.2 Adult Fat Body    85.9 Adult Salivary Gland    91.6 Adult Heart    131.4 Adult VirginFemale Spermatheca    196.4 Adult InseminatedFemale Spermatheca    171.1 Adult Ovary    36.1 Adult Testis    19.9 Adult Male Accessory Gland    167.1 Adult Carcass    138.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  644.2 Larval Midgut    80.7 Larval Hindgut    120.2 Larval Malpighian Tubules    222.8 Larval Fat Body    150.4 Larval Salivary Gland    105.1 Larval Trachea    73.275 Larval Carcass    92.175 Adult Head  (954) Adult Eye  648.025 Adult Brain  (2057.5) Adult Thoracic-Abdominal Ganglion  (2365.9) Adult Crop    206.1 Adult Midgut    79.6 Adult Hindgut    152.8 Adult Malpighian Tubules    192.2 Adult Fat Body    85.9 Adult Salivary Gland    91.6 Adult Heart    131.4 Adult VirginFemale Spermatheca    196.4 Adult InseminatedFemale Spermatheca    171.1 Adult Ovary    36.1 Adult Testis    19.9 Adult Male Accessory Gland    167.1 Adult Carcass    138.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    644.2 Larval Midgut    80.7 Larval Hindgut    120.2 Larval Malpighian Tubules    222.8 Larval Fat Body    150.4 Larval Salivary Gland    105.1 Larval Trachea    73.275 Larval Carcass    92.175 Adult Head    954 Adult Eye    648.025 Adult Brain  (2057.5) Adult Thoracic-Abdominal Ganglion  (2365.9) Adult Crop    206.1 Adult Midgut    79.6 Adult Hindgut    152.8 Adult Malpighian Tubules    192.2 Adult Fat Body    85.9 Adult Salivary Gland    91.6 Adult Heart    131.4 Adult VirginFemale Spermatheca    196.4 Adult InseminatedFemale Spermatheca    171.1 Adult Ovary    36.1 Adult Testis    19.9 Adult Male Accessory Gland    167.1 Adult Carcass    138.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    644.2 Larval Midgut    80.7 Larval Hindgut    120.2 Larval Malpighian Tubules    222.8 Larval Fat Body    150.4 Larval Salivary Gland    105.1 Larval Trachea    73.275 Larval Carcass    92.175 Adult Head    954 Adult Eye    648.025 Adult Brain    2057.5 Adult Thoracic-Abdominal Ganglion    2365.9 Adult Crop    206.1 Adult Midgut    79.6 Adult Hindgut    152.8 Adult Malpighian Tubules    192.2 Adult Fat Body    85.9 Adult Salivary Gland    91.6 Adult Heart    131.4 Adult VirginFemale Spermatheca    196.4 Adult InseminatedFemale Spermatheca    171.1 Adult Ovary    36.1 Adult Testis    19.9 Adult Male Accessory Gland    167.1 Adult Carcass    138.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    954   NA  Eye    648.025   NA  Brain    2057.5   644.2  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    2365.9   NA  Crop    206.1   80.7  Midgut    79.6   120.2  Hindgut    152.8   222.8  Malpighian Tubules    192.2   150.4  Fat Body    85.9   105.1  Salivary Gland    91.6   NA  Heart    131.4   73.275  Trachea    NA   NA  VirginFemale Spermatheca    196.4   NA  InseminatedFemale Spermatheca    171.1   NA  Ovary    36.1   NA  Testis    19.9   NA  Male Accessory Gland    167.1   92.175  Carcass    138.7 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    33 central nervous system, larvae L3    44 central nervous system, pupae P8    182 head, virgin 1-day female    95 head, virgin 4-day female    92 head, virgin 20-day female    66 head, mated 1-day female    80 head, mated 4-day female    74 head, mated 20-day female    59 head, mated 1-day male    136 head, mated 4-day male    145 head, mated 20-day male    132 salivary gland, larvae L3 wandering    57 salivary gland, white prepupae    221 digestive system, larvae L3 wandering    93 digestive system, 1-day adult    33 digestive system, 4-day adult    26 digestive system, 20-day adult    27 fat body, larvae L3 wandering    12 fat body, white prepupae    33 fat body, pupae P8    82 carcass, larvae L3 wandering    40 carcass, 1-day adult    28 carcass, 4-day adult    31 carcass, 20-day adult    32 ovary, virgin 4-day female    36 ovary, mated 4-day female    28 testis, mated 4-day male    31 accessory gland, mated 4-day male    25 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (33) central nervous system, larvae L3  (44) central nervous system, pupae P8  (182) head, virgin 1-day female  (95) head, virgin 4-day female  (92) head, virgin 20-day female  (66) head, mated 1-day female  (80) head, mated 4-day female  (74) head, mated 20-day female  (59) head, mated 1-day male  (136) head, mated 4-day male  (145) head, mated 20-day male  (132) salivary gland, larvae L3 wandering  (57) salivary gland, white prepupae  (221) digestive system, larvae L3 wandering  (93) digestive system, 1-day adult  (33) digestive system, 4-day adult  26 digestive system, 20-day adult  (27) fat body, larvae L3 wandering    12 fat body, white prepupae  (33) fat body, pupae P8  (82) carcass, larvae L3 wandering  (40) carcass, 1-day adult  (28) carcass, 4-day adult  (31) carcass, 20-day adult  (32) ovary, virgin 4-day female  (36) ovary, mated 4-day female  (28) testis, mated 4-day male  (31) accessory gland, mated 4-day male    25 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    33 central nervous system, larvae L3    44 central nervous system, pupae P8  (182) head, virgin 1-day female    95 head, virgin 4-day female    92 head, virgin 20-day female    66 head, mated 1-day female    80 head, mated 4-day female    74 head, mated 20-day female    59 head, mated 1-day male  (136) head, mated 4-day male  (145) head, mated 20-day male  (132) salivary gland, larvae L3 wandering    57 salivary gland, white prepupae  (221) digestive system, larvae L3 wandering    93 digestive system, 1-day adult    33 digestive system, 4-day adult    26 digestive system, 20-day adult    27 fat body, larvae L3 wandering    12 fat body, white prepupae    33 fat body, pupae P8    82 carcass, larvae L3 wandering    40 carcass, 1-day adult    28 carcass, 4-day adult    31 carcass, 20-day adult    32 ovary, virgin 4-day female    36 ovary, mated 4-day female    28 testis, mated 4-day male    31 accessory gland, mated 4-day male    25 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    33 central nervous system, larvae L3    44 central nervous system, pupae P8    182 head, virgin 1-day female    95 head, virgin 4-day female    92 head, virgin 20-day female    66 head, mated 1-day female    80 head, mated 4-day female    74 head, mated 20-day female    59 head, mated 1-day male    136 head, mated 4-day male    145 head, mated 20-day male    132 salivary gland, larvae L3 wandering    57 salivary gland, white prepupae    221 digestive system, larvae L3 wandering    93 digestive system, 1-day adult    33 digestive system, 4-day adult    26 digestive system, 20-day adult    27 fat body, larvae L3 wandering    12 fat body, white prepupae    33 fat body, pupae P8    82 carcass, larvae L3 wandering    40 carcass, 1-day adult    28 carcass, 4-day adult    31 carcass, 20-day adult    32 ovary, virgin 4-day female    36 ovary, mated 4-day female    28 testis, mated 4-day male    31 accessory gland, mated 4-day male    25 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    33 central nervous system, larvae L3    44 central nervous system, pupae P8    182 head, virgin 1-day female    95 head, virgin 4-day female    92 head, virgin 20-day female    66 head, mated 1-day female    80 head, mated 4-day female    74 head, mated 20-day female    59 head, mated 1-day male    136 head, mated 4-day male    145 head, mated 20-day male    132 salivary gland, larvae L3 wandering    57 salivary gland, white prepupae    221 digestive system, larvae L3 wandering    93 digestive system, 1-day adult    33 digestive system, 4-day adult    26 digestive system, 20-day adult    27 fat body, larvae L3 wandering    12 fat body, white prepupae    33 fat body, pupae P8    82 carcass, larvae L3 wandering    40 carcass, 1-day adult    28 carcass, 4-day adult    31 carcass, 20-day adult    32 ovary, virgin 4-day female    36 ovary, mated 4-day female    28 testis, mated 4-day male    31 accessory gland, mated 4-day male    25 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (33) central nervous system, larvae L3  (44) central nervous system, pupae P8  (182) head, virgin 1-day female  (95) head, virgin 4-day female  (92) head, virgin 20-day female  (66) head, mated 1-day female  (80) head, mated 4-day female  (74) head, mated 20-day female  (59) head, mated 1-day male  (136) head, mated 4-day male  (145) head, mated 20-day male  (132) salivary gland, larvae L3 wandering  (57) salivary gland, white prepupae  (221) digestive system, larvae L3 wandering  (93) digestive system, 1-day adult  (33) digestive system, 4-day adult  26 digestive system, 20-day adult  27 fat body, larvae L3 wandering    12 fat body, white prepupae  (33) fat body, pupae P8  (82) carcass, larvae L3 wandering  (40) carcass, 1-day adult  28 carcass, 4-day adult  31 carcass, 20-day adult  32 ovary, virgin 4-day female  (36) ovary, mated 4-day female  28 testis, mated 4-day male  31 accessory gland, mated 4-day male    25 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    33 central nervous system, larvae L3    44 central nervous system, pupae P8  (182) head, virgin 1-day female    95 head, virgin 4-day female    92 head, virgin 20-day female    66 head, mated 1-day female    80 head, mated 4-day female    74 head, mated 20-day female    59 head, mated 1-day male  136 head, mated 4-day male  (145) head, mated 20-day male  132 salivary gland, larvae L3 wandering    57 salivary gland, white prepupae  (221) digestive system, larvae L3 wandering    93 digestive system, 1-day adult    33 digestive system, 4-day adult    26 digestive system, 20-day adult    27 fat body, larvae L3 wandering    12 fat body, white prepupae    33 fat body, pupae P8    82 carcass, larvae L3 wandering    40 carcass, 1-day adult    28 carcass, 4-day adult    31 carcass, 20-day adult    32 ovary, virgin 4-day female    36 ovary, mated 4-day female    28 testis, mated 4-day male    31 accessory gland, mated 4-day male    25 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    33 central nervous system, larvae L3    44 central nervous system, pupae P8    182 head, virgin 1-day female    95 head, virgin 4-day female    92 head, virgin 20-day female    66 head, mated 1-day female    80 head, mated 4-day female    74 head, mated 20-day female    59 head, mated 1-day male    136 head, mated 4-day male    145 head, mated 20-day male    132 salivary gland, larvae L3 wandering    57 salivary gland, white prepupae    221 digestive system, larvae L3 wandering    93 digestive system, 1-day adult    33 digestive system, 4-day adult    26 digestive system, 20-day adult    27 fat body, larvae L3 wandering    12 fat body, white prepupae    33 fat body, pupae P8    82 carcass, larvae L3 wandering    40 carcass, 1-day adult    28 carcass, 4-day adult    31 carcass, 20-day adult    32 ovary, virgin 4-day female    36 ovary, mated 4-day female    28 testis, mated 4-day male    31 accessory gland, mated 4-day male    25 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    49 embryo 04-06hr    43 embryo 06-08hr    43 embryo 08-10hr    52 embryo 10-12hr    61 embryo 12-14hr    49 embryo 14-16hr    49 embryo 16-18hr    68 embryo 18-20hr    56 embryo 20-22hr    54 embryo 22-24hr    62 larva L1    39 larva L2    35 larva L3 12hr old    26 larva L3 puffstage 1-2    33 larva L3 puffstage 3-6    46 larva L3 puffstage 7-9    75 white prepupae new    100 white prepupae 12hr    79 white prepupae 24hr    55 pupae 2d postWPP    66 pupae 3d postWPP    54 pupae 4d postWPP    35 adult male 01day    47 adult male 05day    47 adult male 30day    42 adult female 01day    37 adult female 05day    38 adult female 30day    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (35) embryo 02-04hr  (49) embryo 04-06hr  (43) embryo 06-08hr  (43) embryo 08-10hr  (52) embryo 10-12hr  (61) embryo 12-14hr  (49) embryo 14-16hr  (49) embryo 16-18hr  (68) embryo 18-20hr  (56) embryo 20-22hr  (54) embryo 22-24hr  (62) larva L1  (39) larva L2  (35) larva L3 12hr old  26 larva L3 puffstage 1-2  (33) larva L3 puffstage 3-6  (46) larva L3 puffstage 7-9  (75) white prepupae new  (100) white prepupae 12hr  (79) white prepupae 24hr  (55) pupae 2d postWPP  (66) pupae 3d postWPP  (54) pupae 4d postWPP  (35) adult male 01day  (47) adult male 05day  (47) adult male 30day  (42) adult female 01day  (37) adult female 05day  (38) adult female 30day  (38) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    49 embryo 04-06hr    43 embryo 06-08hr    43 embryo 08-10hr    52 embryo 10-12hr    61 embryo 12-14hr    49 embryo 14-16hr    49 embryo 16-18hr    68 embryo 18-20hr    56 embryo 20-22hr    54 embryo 22-24hr    62 larva L1    39 larva L2    35 larva L3 12hr old    26 larva L3 puffstage 1-2    33 larva L3 puffstage 3-6    46 larva L3 puffstage 7-9    75 white prepupae new    100 white prepupae 12hr    79 white prepupae 24hr    55 pupae 2d postWPP    66 pupae 3d postWPP    54 pupae 4d postWPP    35 adult male 01day    47 adult male 05day    47 adult male 30day    42 adult female 01day    37 adult female 05day    38 adult female 30day    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    49 embryo 04-06hr    43 embryo 06-08hr    43 embryo 08-10hr    52 embryo 10-12hr    61 embryo 12-14hr    49 embryo 14-16hr    49 embryo 16-18hr    68 embryo 18-20hr    56 embryo 20-22hr    54 embryo 22-24hr    62 larva L1    39 larva L2    35 larva L3 12hr old    26 larva L3 puffstage 1-2    33 larva L3 puffstage 3-6    46 larva L3 puffstage 7-9    75 white prepupae new    100 white prepupae 12hr    79 white prepupae 24hr    55 pupae 2d postWPP    66 pupae 3d postWPP    54 pupae 4d postWPP    35 adult male 01day    47 adult male 05day    47 adult male 30day    42 adult female 01day    37 adult female 05day    38 adult female 30day    38 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    49 embryo 04-06hr    43 embryo 06-08hr    43 embryo 08-10hr    52 embryo 10-12hr    61 embryo 12-14hr    49 embryo 14-16hr    49 embryo 16-18hr    68 embryo 18-20hr    56 embryo 20-22hr    54 embryo 22-24hr    62 larva L1    39 larva L2    35 larva L3 12hr old    26 larva L3 puffstage 1-2    33 larva L3 puffstage 3-6    46 larva L3 puffstage 7-9    75 white prepupae new    100 white prepupae 12hr    79 white prepupae 24hr    55 pupae 2d postWPP    66 pupae 3d postWPP    54 pupae 4d postWPP    35 adult male 01day    47 adult male 05day    47 adult male 30day    42 adult female 01day    37 adult female 05day    38 adult female 30day    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (35) embryo 02-04hr  (49) embryo 04-06hr  (43) embryo 06-08hr  (43) embryo 08-10hr  (52) embryo 10-12hr  (61) embryo 12-14hr  (49) embryo 14-16hr  (49) embryo 16-18hr  (68) embryo 18-20hr  (56) embryo 20-22hr  (54) embryo 22-24hr  (62) larva L1  (39) larva L2  (35) larva L3 12hr old  26 larva L3 puffstage 1-2  (33) larva L3 puffstage 3-6  (46) larva L3 puffstage 7-9  (75) white prepupae new  (100) white prepupae 12hr  (79) white prepupae 24hr  (55) pupae 2d postWPP  (66) pupae 3d postWPP  (54) pupae 4d postWPP  (35) adult male 01day  (47) adult male 05day  (47) adult male 30day  (42) adult female 01day  (37) adult female 05day  (38) adult female 30day  (38) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    49 embryo 04-06hr    43 embryo 06-08hr    43 embryo 08-10hr    52 embryo 10-12hr    61 embryo 12-14hr    49 embryo 14-16hr    49 embryo 16-18hr    68 embryo 18-20hr    56 embryo 20-22hr    54 embryo 22-24hr    62 larva L1    39 larva L2    35 larva L3 12hr old    26 larva L3 puffstage 1-2    33 larva L3 puffstage 3-6    46 larva L3 puffstage 7-9    75 white prepupae new    100 white prepupae 12hr    79 white prepupae 24hr    55 pupae 2d postWPP    66 pupae 3d postWPP    54 pupae 4d postWPP    35 adult male 01day    47 adult male 05day    47 adult male 30day    42 adult female 01day    37 adult female 05day    38 adult female 30day    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    35 embryo 02-04hr    49 embryo 04-06hr    43 embryo 06-08hr    43 embryo 08-10hr    52 embryo 10-12hr    61 embryo 12-14hr    49 embryo 14-16hr    49 embryo 16-18hr    68 embryo 18-20hr    56 embryo 20-22hr    54 embryo 22-24hr    62 larva L1    39 larva L2    35 larva L3 12hr old    26 larva L3 puffstage 1-2    33 larva L3 puffstage 3-6    46 larva L3 puffstage 7-9    75 white prepupae new    100 white prepupae 12hr    79 white prepupae 24hr    55 pupae 2d postWPP    66 pupae 3d postWPP    54 pupae 4d postWPP    35 adult male 01day    47 adult male 05day    47 adult male 30day    42 adult female 01day    37 adult female 05day    38 adult female 30day    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    99 Schneider line 2 Sg4    61 embryonic 1182-4H    65 embryonic GM2    92 embryonic Kc167    55 embryonic S1    64 embryonic S3    101 leg disc CME L1    73 wing disc CME-W2    76 wing disc ML-DmD8    32 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    35 wing disc ML-DmD21    52 wing disc ML-DmD32    36 haltere disc ML-DmD17-c3    30 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    48 mixed discs ML-DmD4-c1    59 CNS ML-DmBG1-c1    59 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    78 ovary fGS/OSS    32 ovary OSC    30 ovary OSS    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (99) Schneider line 2 Sg4  (61) embryonic 1182-4H  (65) embryonic GM2  (92) embryonic Kc167  (55) embryonic S1  (64) embryonic S3  (101) leg disc CME L1  (73) wing disc CME-W2  (76) wing disc ML-DmD8  (32) wing disc ML-DmD9  (38) wing disc ML-DmD16-c3  (35) wing disc ML-DmD21  (52) wing disc ML-DmD32  (36) haltere disc ML-DmD17-c3  (30) eye-antennal disc ML-DmD11  (48) antennal disc ML-DmD20-c5  (48) mixed discs ML-DmD4-c1  (59) CNS ML-DmBG1-c1  (59) CNS ML-DmBG2-c2  (68) tumorous blood cells mbn2  (78) ovary fGS/OSS  (32) ovary OSC  (30) ovary OSS  (30) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    99 Schneider line 2 Sg4    61 embryonic 1182-4H    65 embryonic GM2    92 embryonic Kc167    55 embryonic S1    64 embryonic S3  101 leg disc CME L1    73 wing disc CME-W2    76 wing disc ML-DmD8    32 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    35 wing disc ML-DmD21    52 wing disc ML-DmD32    36 haltere disc ML-DmD17-c3    30 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    48 mixed discs ML-DmD4-c1    59 CNS ML-DmBG1-c1    59 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    78 ovary fGS/OSS    32 ovary OSC    30 ovary OSS    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    99 Schneider line 2 Sg4    61 embryonic 1182-4H    65 embryonic GM2    92 embryonic Kc167    55 embryonic S1    64 embryonic S3    101 leg disc CME L1    73 wing disc CME-W2    76 wing disc ML-DmD8    32 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    35 wing disc ML-DmD21    52 wing disc ML-DmD32    36 haltere disc ML-DmD17-c3    30 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    48 mixed discs ML-DmD4-c1    59 CNS ML-DmBG1-c1    59 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    78 ovary fGS/OSS    32 ovary OSC    30 ovary OSS    30 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    99 Schneider line 2 Sg4    61 embryonic 1182-4H    65 embryonic GM2    92 embryonic Kc167    55 embryonic S1    64 embryonic S3    101 leg disc CME L1    73 wing disc CME-W2    76 wing disc ML-DmD8    32 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    35 wing disc ML-DmD21    52 wing disc ML-DmD32    36 haltere disc ML-DmD17-c3    30 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    48 mixed discs ML-DmD4-c1    59 CNS ML-DmBG1-c1    59 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    78 ovary fGS/OSS    32 ovary OSC    30 ovary OSS    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (99) Schneider line 2 Sg4  (61) embryonic 1182-4H  (65) embryonic GM2  (92) embryonic Kc167  (55) embryonic S1  (64) embryonic S3  (101) leg disc CME L1  (73) wing disc CME-W2  (76) wing disc ML-DmD8  32 wing disc ML-DmD9  (38) wing disc ML-DmD16-c3  (35) wing disc ML-DmD21  (52) wing disc ML-DmD32  (36) haltere disc ML-DmD17-c3  30 eye-antennal disc ML-DmD11  (48) antennal disc ML-DmD20-c5  (48) mixed discs ML-DmD4-c1  (59) CNS ML-DmBG1-c1  (59) CNS ML-DmBG2-c2  (68) tumorous blood cells mbn2  (78) ovary fGS/OSS  32 ovary OSC  30 ovary OSS  30 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    99 Schneider line 2 Sg4    61 embryonic 1182-4H    65 embryonic GM2    92 embryonic Kc167    55 embryonic S1    64 embryonic S3  101 leg disc CME L1    73 wing disc CME-W2    76 wing disc ML-DmD8    32 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    35 wing disc ML-DmD21    52 wing disc ML-DmD32    36 haltere disc ML-DmD17-c3    30 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    48 mixed discs ML-DmD4-c1    59 CNS ML-DmBG1-c1    59 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    78 ovary fGS/OSS    32 ovary OSC    30 ovary OSS    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    99 Schneider line 2 Sg4    61 embryonic 1182-4H    65 embryonic GM2    92 embryonic Kc167    55 embryonic S1    64 embryonic S3    101 leg disc CME L1    73 wing disc CME-W2    76 wing disc ML-DmD8    32 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    35 wing disc ML-DmD21    52 wing disc ML-DmD32    36 haltere disc ML-DmD17-c3    30 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    48 mixed discs ML-DmD4-c1    59 CNS ML-DmBG1-c1    59 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    78 ovary fGS/OSS    32 ovary OSC    30 ovary OSS    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    34 cold shock, 4-day adult    22 heat shock, 4-day adult    27 Cadmium 50 mM 6 hrs, larvae L3    29 Cadmium 50 mM 12 hrs, larvae L3    54 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    37 Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    38 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    42 Ethanol 2.5% 3 hrs, larvae L3    38 Ethanol 5% 3 hrs, larvae L3    37 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    36 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    25 Paraquat 5 mM 48 hrs, 4-day adult    42 Paraquat 10 mM 48 hrs, 4-day adult    47 Rotenone 2 μg 12 hrs, larvae L3    36 Rotenone 8 μg 12 hrs, larvae L3    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (34) cold shock, 4-day adult    22 heat shock, 4-day adult  (27) Cadmium 50 mM 6 hrs, larvae L3  (29) Cadmium 50 mM 12 hrs, larvae L3  (54) Cadmium 50 mM 48 hrs, 4-day adult  (27) Cadmium 100 mM 48 hrs, 4-day adult  (37) Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult  (38) Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult  (42) Ethanol 2.5% 3 hrs, larvae L3  (38) Ethanol 5% 3 hrs, larvae L3  (37) Ethanol 10% 3 hrs, larvae L3  26 Caffeine 1.5 mg/ml 4 hrs, larvae L3  (36) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (37) Caffeine 25 mg/ml 48 hrs, 4-day adult    25 Paraquat 5 mM 48 hrs, 4-day adult  (42) Paraquat 10 mM 48 hrs, 4-day adult  (47) Rotenone 2 μg 12 hrs, larvae L3  (36) Rotenone 8 μg 12 hrs, larvae L3  (27) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    34 cold shock, 4-day adult    22 heat shock, 4-day adult    27 Cadmium 50 mM 6 hrs, larvae L3    29 Cadmium 50 mM 12 hrs, larvae L3    54 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    37 Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    38 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    42 Ethanol 2.5% 3 hrs, larvae L3    38 Ethanol 5% 3 hrs, larvae L3    37 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    36 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    25 Paraquat 5 mM 48 hrs, 4-day adult    42 Paraquat 10 mM 48 hrs, 4-day adult    47 Rotenone 2 μg 12 hrs, larvae L3    36 Rotenone 8 μg 12 hrs, larvae L3    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    34 cold shock, 4-day adult    22 heat shock, 4-day adult    27 Cadmium 50 mM 6 hrs, larvae L3    29 Cadmium 50 mM 12 hrs, larvae L3    54 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    37 Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    38 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    42 Ethanol 2.5% 3 hrs, larvae L3    38 Ethanol 5% 3 hrs, larvae L3    37 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    36 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    25 Paraquat 5 mM 48 hrs, 4-day adult    42 Paraquat 10 mM 48 hrs, 4-day adult    47 Rotenone 2 μg 12 hrs, larvae L3    36 Rotenone 8 μg 12 hrs, larvae L3    27 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    34 cold shock, 4-day adult    22 heat shock, 4-day adult    27 Cadmium 50 mM 6 hrs, larvae L3    29 Cadmium 50 mM 12 hrs, larvae L3    54 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    37 Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    38 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    42 Ethanol 2.5% 3 hrs, larvae L3    38 Ethanol 5% 3 hrs, larvae L3    37 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    36 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    25 Paraquat 5 mM 48 hrs, 4-day adult    42 Paraquat 10 mM 48 hrs, 4-day adult    47 Rotenone 2 μg 12 hrs, larvae L3    36 Rotenone 8 μg 12 hrs, larvae L3    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (34) cold shock, 4-day adult    22 heat shock, 4-day adult  27 Cadmium 50 mM 6 hrs, larvae L3  29 Cadmium 50 mM 12 hrs, larvae L3  (54) Cadmium 50 mM 48 hrs, 4-day adult  27 Cadmium 100 mM 48 hrs, 4-day adult  (37) Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult  (38) Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult  (42) Ethanol 2.5% 3 hrs, larvae L3  (38) Ethanol 5% 3 hrs, larvae L3  (37) Ethanol 10% 3 hrs, larvae L3  26 Caffeine 1.5 mg/ml 4 hrs, larvae L3  (36) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (37) Caffeine 25 mg/ml 48 hrs, 4-day adult    25 Paraquat 5 mM 48 hrs, 4-day adult  (42) Paraquat 10 mM 48 hrs, 4-day adult  (47) Rotenone 2 μg 12 hrs, larvae L3  (36) Rotenone 8 μg 12 hrs, larvae L3  27 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    34 cold shock, 4-day adult    22 heat shock, 4-day adult    27 Cadmium 50 mM 6 hrs, larvae L3    29 Cadmium 50 mM 12 hrs, larvae L3    54 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    37 Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    38 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    42 Ethanol 2.5% 3 hrs, larvae L3    38 Ethanol 5% 3 hrs, larvae L3    37 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    36 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    25 Paraquat 5 mM 48 hrs, 4-day adult    42 Paraquat 10 mM 48 hrs, 4-day adult    47 Rotenone 2 μg 12 hrs, larvae L3    36 Rotenone 8 μg 12 hrs, larvae L3    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    34 cold shock, 4-day adult    22 heat shock, 4-day adult    27 Cadmium 50 mM 6 hrs, larvae L3    29 Cadmium 50 mM 12 hrs, larvae L3    54 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    37 Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    38 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    42 Ethanol 2.5% 3 hrs, larvae L3    38 Ethanol 5% 3 hrs, larvae L3    37 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    36 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    25 Paraquat 5 mM 48 hrs, 4-day adult    42 Paraquat 10 mM 48 hrs, 4-day adult    47 Rotenone 2 μg 12 hrs, larvae L3    36 Rotenone 8 μg 12 hrs, larvae L3    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_25 mE1_20_mRNA_expression_cluster_02
External Data & Images
Linkouts	BDGP expression data • LD21601 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0250791 FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Snap Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL4elav-C155 SnapScer\UAS.cPa lethal, with Scer\GAL4Mef2.PR SnapGD11986 lethal, with Scer\GAL4pnr-MD237 SnapGD11986 lethal (with Df(3L)rdgC-co2) Snapl65 lethal | embryonic stage (with Df(3L)rdgC-co2) SnapM3 lethal | embryonic stage | recessive SnapI1 Snapl65 SnapM3 lethal | first instar larval stage | recessive SnapG8 lethal | larval stage | recessive SnapP2 lethal | recessive SnapG8 SnapI1 SnapM3 SnapM4 SnapO1 SnapP2 SnapY7 partially lethal - majority die, with Scer\GAL4elav.PLu SnapGD11986 partially lethal - majority die (with Df(3L)rdgC-co2) SnapM4 viable SnapEY06922 SnapM4 Sterility Allele fertile SnapEY06922 Other Phenotypes Allele flight defective, with Scer\GAL4elav.PLu SnapGD11986 locomotor behavior defective, with Scer\GAL4elav.PLu SnapGD11986 neurophysiology defective, with Scer\GAL4Rapgap1-OK6 SnapScer\UAS.cPa neurophysiology defective (with Df(3L)rdgC-co2) SnapM4 uncoordinated (with Df(3L)rdgC-co2) SnapM4 Phenotype manifest in Allele bouton, with Scer\GAL4Rapgap1-OK6 SnapScer\UAS.cPa embryonic/first instar larval cuticle (with Df(3L)rdgC-co2) SnapM3 embryonic/larval neuromuscular junction, with Scer\GAL4Rapgap1-OK6 SnapScer\UAS.cPa eye, with Scer\GAL4GMR.PF SnapScer\UAS.cPa Golgi apparatus, with Scer\GAL4hs.PB SnapScer\UAS.cPa Golgi stack | ectopic, with Scer\GAL4hs.PB SnapScer\UAS.cPa tracheal branch primordium (with Df(3L)rdgC-co2) SnapM3 wing, with Scer\GAL4elav-C155 SnapScer\UAS.cPa
Classical Alleles ( 11 )
For All Classical Alleles Show
Allele of Snap Class Mutagen Stocks Known lesion SnapEY06922 P-element activity 1 -- Snapf04776 piggyBac transposase 1 -- SnapG8 hypomorphic allele - genetic evidence ethyl methanesulfonate 1 Yes SnapGS21416 1 -- SnapM4 hypomorphic allele - genetic evidence ethyl methanesulfonate 1 Yes SnapI1 loss of function allele ethyl methanesulfonate 0 Yes Snapl65 loss of function allele ethyl methanesulfonate 0 Yes SnapM3 loss of function allele ethyl methanesulfonate 0 Yes SnapO1 ethyl methanesulfonate 0 Yes SnapP2 ethyl methanesulfonate 0 Yes SnapY7 ethyl methanesulfonate 0 --
Alleles Carried on Transgenic Constructs ( 8 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Snap Class Mutagen Stocks Known lesion SnapGD11986 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes SnapHMS00872 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes SnapJF03266 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes SnapKK107910 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Snap+t8.9 in vitro construct - genomic fragment 0 Yes SnapKK107928 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes SnapNIG.6625R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes SnapScer\UAS.cPa in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel6136 (Ryder, 2004.4.26) Df(3L)rdgC-co2 (Lukinova et al., 1999)
Not disrupted in	Df(3L)ri-79c (Lukinova et al., 1999)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD11986} NA P{KK107910} NA P{KK107928} NA P{NIG.6625R} NA P{TRiP.HMS00872} NA P{TRiP.JF03266} NA P{UAS-Snap.P} NA characterization construct P{Snap8.9+} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}SnapEY06922 NA P{GSV7}SnapGS21416 NA miscellaneous insertions P{wHy}poloDG12705 NA PBac{WH}Snapf04776 NA
Gene Ontology: Function, Process & Cellular Component ( 17 unique terms )
Terms Based on Experimental Evidence ( 12 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
compound eye morphogenesis inferred from mutant phenotype (Babcock et al., 2004) cytokinesis inferred from mutant phenotype (Echard et al., 2004) imaginal disc-derived wing expansion inferred from mutant phenotype (Babcock et al., 2004) intracellular protein transport inferred from mutant phenotype (assigned by UniProtKB) (Stuart et al., 2007) intra-Golgi vesicle-mediated transport inferred from mutant phenotype (assigned by UniProtKB) (Stuart et al., 2007) neuron projection morphogenesis inferred from mutant phenotype (Sepp et al., 2008) phagocytosis, engulfment inferred from mutant phenotype (Stroschein-Stevenson et al., 2006) synaptic transmission inferred from mutant phenotype (Babcock et al., 2004)
Cellular Component
CV term Evidence References
axon terminus inferred from direct assay (Babcock et al., 2004) cytoplasmic vesicle inferred from direct assay (assigned by UniProtKB) (Stuart et al., 2007) membrane inferred from direct assay (assigned by UniProtKB) (Stuart et al., 2007) colocalizes_with SNARE complex inferred from direct assay (Guruharsha et al., 2011)
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
soluble NSF attachment protein activity non-traceable author statement (Ordway, 1994.5.4, Lloyd et al., 2000)
Biological Process
CV term Evidence References
ER to Golgi vesicle-mediated transport non-traceable author statement (Swiss-Prot Project Members, 2001.10.16) neurotransmitter secretion non-traceable author statement (Lloyd et al., 2000) synaptic vesicle priming non-traceable author statement (Lloyd et al., 2000)
Cellular Component
CV term Evidence References
extrinsic to membrane non-traceable author statement (Swiss-Prot Project Members, 2001.10.16)
Sequence Ontology: Class of Gene
	gene   nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
Snap - ATPsyn-Cf6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - ATPsyn-γ anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - AnxB9 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Arc1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Atpα anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Bet1 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - CG10289 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG11857 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG11876 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG1371 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG13887 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG1458 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG15098 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG1599 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Snap - CG2023 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Snap - CG2064 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG2065 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG2070 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG2789 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG2943 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG31523 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG33129 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG33230 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG33303 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG3566 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG4169 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG4692 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG4769 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG5174 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG5210 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG5676 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG5854 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG6208 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - CG6750 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG7049 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CG8258 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Cctγ anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Chc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Clc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CoIV anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CoVa anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - CycK anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Cyt-b5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Der-1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Df31 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Fer1HCH anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Gie anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Gos28 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - Gp210 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Jwa anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Karyβ3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Khc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Mec2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Mgstl anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Mpcp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Mtch anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Mtpα anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Nsf2 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Snap - Oscp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Ost48 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - OstΔ anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - PHGPx anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Past1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Pp2A-29B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Rab1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Rab6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - RpLP0 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - RpS19a anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Rpn2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Rpn3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Rpn7 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Rpt4 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Sc2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Scamp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Scox anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Sec22 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - Slh anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - Snap24 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - Snap25 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - Syb experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Snap - Syx13 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - Syx16 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Snap - Syx18 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Snap - Syx1A experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Snap - Syx5 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Snap - Syx7 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Snap - Syx8 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - Tango7 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Tcp-1ζ anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Tcp-1η anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Tsp42Ed anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - Use1 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - Vti1 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - Ykt6 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - cathD anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - ctp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - exba anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - fax anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - ifc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - koko anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - l(1)G0230 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - l(1)G0320 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - l(2)03709 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - l(2)06225 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - l(2)37Cc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - l(2)k12914 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - membrin experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Snap - mib2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - porin anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - scu anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - sun anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Snap - usnp anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Snap - γSnap experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Snap allele Gene References unspecified comt (Babcock et al., 2004) Nsf2 (Babcock et al., 2004, Laviolette et al., 2005) Syx1A (Babcock et al., 2004)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 65495 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0250791 DroID - A comprehensive database of gene and protein interactions. • FBgn0250791 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40233
Orthologs
OrthoDB Orthologs (46) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG612MRJ Dipteran inclusive ortholog search EOG62JP17 Insect inclusive ortholog search EOG6254PJ Arthropod inclusive ortholog search EOG62RBQ2 Metazoa inclusive ortholog search EOG64V22X
Orthologs in Drosophila Species (EOG612MRJ)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Snap     Drosophila simulans   Dsim\GD14872 Y   Drosophila sechellia   Dsec\GM22271 Y   Drosophila erecta   Dere\GG16100 Y   Drosophila yakuba   Dyak\GE19660 Y   Drosophila ananassae   Dana\GF10051 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA19734 Y   Drosophila persimilis   Dper\GL25130 Y   Drosophila willistoni   Dwil\GK16949 Y   Drosophila virilis   Dvir\GJ11580 Y   Drosophila mojavensis   Dmoj\GI11324 Y   Drosophila grimshawi   Dgri\GH14381 Y
Orthologs in non-Drosophila Dipterans (EOG62JP17)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL011776   Anopheles gambiae Malaria mosquito  Agam\AGAP003192   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ013203
Orthologs in non-Dipteran Insects (EOG6254PJ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\Snap   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG026339   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH18282   Atta cephalotes Leafcutter ant  Acep\ACEP19160   Camponotus floridanus Florida carpenter ant  Cflo\CFLO12655   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21162   Linepithema humile Argentine ant  Lhum\LH11648   Pogonomyrmex barbatus Red harvester ant  Pbar\PB19767   Solenopsis invicta Red fire ant  Sinv\SINV21000   Acyrthosiphon pisum Pea aphid  Apim\ACYPI001188   Bombyx mori Silkmoth  Bmor\BGIBMGA010068   Pediculus humanus Human body louse  Phum\PHUM600830   Tribolium castaneum Red flour beetle  Tcas\TC013571   Tribolium castaneum Red flour beetle  Tcas\TC004109
Orthologs in non-Insect Arthropods (EOG62RBQ2)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\EXOC6   Daphnia pulex Water flea  Dpux\cutl-12   Ixodes scapularis Deer tick  Isca\ISCW015531
Orthologs in non-Arthropod Metazoa (EOG64V22X)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\snap-1   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_019300gn   Danio rerio Zebrafish  Drer\si:rp71-81o21.2   Danio rerio Zebrafish  Drer\si:dkeyp-117b8.3   Danio rerio Zebrafish  Drer\ENSDARG00000013669   Danio rerio Zebrafish  Drer\napa   Xenopus tropicalis Western clawed frog  Xtro\napb   Xenopus tropicalis Western clawed frog  Xtro\napa   Gallus gallus Domestic chicken  Ggal\NAPB   Mus musculus House mouse  Mmus\Napa   Rattus norvegicus Norway rat  Rnor\Napa   Rattus norvegicus Norway rat  Rnor\Napb   Homo sapiens Human  Hsap\NAPA   Homo sapiens Human  Hsap\NAPB
Human Orthologs (2)
Gene OMIM HGNC Hsap\NAPA     Hsap\NAPB
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD14872 Drosophila sechellia Dsec\GM22271 Drosophila erecta Dere\GG16100 Drosophila yakuba Dyak\GE19660 Drosophila ananassae Dana\GF10051 Drosophila pseudoobscura pseudoobscura Dpse\GA19734 Drosophila persimilis Dper\GL25130 Drosophila willistoni Dwil\GK16949 Drosophila virilis Dvir\GJ11580 Drosophila mojavensis Dmoj\GI11324 Drosophila grimshawi Dgri\GH14381
Stocks & Reagents
Stocks Listed in FlyBase ( 9 )
Bloomington	5467 SnapG8/TM6C, Sb1 29587 y1 v1; P{TRiP.JF03266}attP2 5465 SnapM4/TM6C, Sb1 Tb1 16770 y1 w67c23; P{EPgy2}SnapEY06922 34088 y1 sc* v1; P{TRiP.HMS00872}attP2
Harvard	- PBac{WH}Snapf04776
Kyoto	202737 y1 w67c23; P{GSV7}SnapGS21416/TM3, Sb1 Ser1
VDRC	v101341 P{KK107910}VIE-260B v22379 w1118; P{GD11986}v22379
Genomic Clones ( 1 )
	BACR16G09 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 149 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD21601
Other clones	DPiM_LD21601
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT14791 AT27291 GH07436 GH12751 GH13084 GH13394 GH27613 GM02149 LD04078 LD12845 LD16687 LD17109 LD35071 LD37424 LD38263 LD39350 LD46881 LP03904 LP04493 LP06976 LP11815 LP23292 RE12744 RE14822 RE16731 RE20285 RE21909 RE26447 RE26547 RE27382 RE36661 RE45304 RE45813 RE47184 RE49753 RE53013 RE53072 RE53219 RE55570 RE64577 RE70002 RE70050 RE72006 RE72088 RE72201 RE72289 RE73192 RE73848 RE73924 RH25968 RH26589 RH50225 RH54384 RH61956 RH67007 RH70514 RH71914 SD13874 SD28048
Other clones	8337 39896 50907 70811 70912 74520 100217 108564 118418 272661 bs34a04 CK01.76C.B4 CK01.125C.F11 CK01.125D.C5 Dmel_neb_002683_0698_0307 EC24427 EC39673 EK059829 EK096224 EK106740 EK153833 EK166008 EK177217 EK181407 EK204448 EK223026 EK235118 EK299441 ESG0115d.B21_H09 FGH111A03 FGM222F12 RP003007367 RP003060370 RP003063654 RP003086227 RP003095171 RP003103363 RP003115700 RP003122134 RP003142342 RP003165838 RP003186205 RP003212822 RP003217324 RP003219620 RP003223261 RP003224154 RP003226891 RP003229457 RP003263520 RP003265065 RP003269951 RP003272137 RP003280841 RP003286569 RP003298269 RP003304270 RP003304783 RP003309692 RP003312798 RP003314841 RP003326492 RP003333205 RP003337619 RP003347055 RP003385352 RP003396446 RP003411268 RP003412554 RP003439582 RP003480628 RP003484038 RP003488550 RP003500500 RP003501649 RP003525086 RP003532908 RP003535787 RP003541105 RP003549835 RP003557843 RP003563804 RP003564674 RP003580590 RP003580603 RP003585749 RP003626169 RP003663349
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0250791 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40233
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: Snap l(3)77ABc l(3)77ABa (Babcock et al., 2004)
Additional comments
Other Comments
	S2 cells treated with dsRNA generated against this gene show reduced phagocytosis of Candida albicans compared to untreated cells. (Stroschein-Stevenson et al., 2006) Identified as a potential component of the hh signalling pathway in a genome-wide RNAi screen. dsRNA made from templates generated with primers directed affects the extent of expression of a hh signaling reporter construct in Clone 8 cells. (Nybakken et al., 2005) Snap is required for the terminal (post-furrowing) events of cytokinesis. (Echard et al., 2004) dsRNA directed against this gene causes defects in cytokinesis when tested in an RNAi screen in S2 cells. (Echard et al., 2004) dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology. (Kiger et al., 2003) Area matching Drosophila SNAP gene, Acc. No. U09374. (Davies, 2001.3.15) Snap gene has been cloned and the gene product characterised. (Ordway et al., 1994) The neurosecretory apparatus of the presynaptic nerve terminal contains a core complex of conserved secretory proteins, Snap is a component this complex. (Pallanck et al., 1994)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_079456 RefSeq (Proteins) • NP_524180 DDBJ / EMBL / GenBank • AA695107 AA735597 AAA83414 AAF49035 AAL39622 AI260575 AI455172 AI947007 AX093947 AY069477 CL527958 CZ487336 CZ487337 U09374 Entrez Gene - A searchable database of RefSeq genes. • 40233 UniProtKB/Swiss-Prot • Q23983
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • NSF attachment protein (IPR000744) Tetratricopeptide-like helical (IPR011990) Tetratricopeptide repeat (IPR019734) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD21601
Linkouts
	BioGRID - A database of protein and genetic interactions • 65495 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0250791 DroID - A comprehensive database of gene and protein interactions. • FBgn0250791 DRSC - Results from RNAi screens. • FBgn0250791 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0250791 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0250791 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40233 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40233 modMine - Data generated by the modENCODE project. • FBgn0250791
Synonyms & Secondary IDs ( 19 )
Reported As
Symbol Synonym	alpha-SNAP (Dunne and Rabouille, 2001) CG6625 (Verstreken and Bellen, 2000.9.4, Nybakken et al., 2005, Keleman et al., 2009.8.5, Gandhi et al., 2007, Perkins et al., 2009, Ni et al., 2010.12.1, Cammarato et al., 2011, Sepp et al., 2008) dSNAP (Xu et al., 2002, Dunne et al., 2002, Pallanck et al., 1994, Schotman et al., 2008) dsnap (Dunne et al., 2002, Schotman et al., 2008) dα-SNAP (Xu et al., 2002) dαSNAP (Bate and Broadie, 1995) l(3)77ABa   l(3)77ABc   SNAP (Ohyama et al., 2007, Babcock et al., 2004, Lloyd et al., 2000, Kaltenbach et al., 2007, Sepp et al., 2008, Simons et al., 2009) Snap (Stroschein-Stevenson et al., 2006, Stuart et al., 2007, Nybakken et al., 2005, Baeg et al., 2007, Dietzl et al., 2007, Liebl and Featherstone, 2008, Romero et al., 2008, Dierick and Greenspan, 2006, Betz and Darnell, 2006, Zhou et al., 2008, Guruharsha et al., 2011, Friedman et al., 2011, Japanese National Institute of Genetics, 2012.5.21, Sepp et al., 2008, Ruben et al., 2012) snap (Laviolette et al., 2005, Beckstead et al., 2007, Smibert et al., 2012, Pinto et al., 2011) α-SNAP (Echard et al., 2004, Muller et al., 2002, Weidenhaupt et al., 2000, Guan et al., 2011) αSnap (Littleton et al., 1998)
Name Synonym	lethal (3) 77ABa   lethal (3) 77ABc   soluble N-ethylmaleimide-sensitive factor attachment protein (Kaltenbach et al., 2007) soluble NSF attachment protein (Ordway, 1994.5.4) Soluble NSF attachment protein (Cammarato et al., 2011) soluble NSF-attachment protein (Romero et al., 2008)
Secondary FlyBase IDs
	FBgn0011712 FBgn0029028 FBgn0029029
References ( 73 )
Generate a list of	All references relating to this gene ( 73 )
List References by type	Research paper  ( 32 ) Supplementary material  ( 10 ) Review  ( 3 ) Erratum  ( 1 ) Personal communication to FlyBase  ( 14 ) Abstract  ( 2 ) FlyBase analysis  ( 1 ) DNA/RNA sequence record  ( 2 ) Stock list  ( 1 ) Patent  ( 1 ) Protein sequence record  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 ) Letter  ( 1 )
Recent research papers ( 6 )
	Ruben et al., 2012, J. Biol. Rhythms 27(5): 353--364 A mechanism for circadian control of pacemaker neuron excitability. [FBrf0219602] Friedman et al., 2011, Sci. Signal. 4(196): rs10 Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. [FBrf0216513] Guan et al., 2011, Learn. Mem. 18(4): 191--206 Altered gene regulation and synaptic morphology in Drosophila learning and memory mutants. [FBrf0213277] Guruharsha et al., 2011, Cell 147(3): 690--703 A Protein Complex Network of Drosophila melanogaster. [FBrf0216491] Pinto et al., 2011, EMBO J. 30(12): 2431--2444 RNA polymerase II kinetics in polo polyadenylation signal selection. [FBrf0213944] Yu et al., 2011, Mol. Cell. Neurosci. 47(1): 19--27 Activity-dependent interactions of NSF and SNAP at living synapses. [FBrf0213595] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...