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Gene Dmel\CG30415

General Information
Symbol	Dmel\CG30415	Species	D. melanogaster
Name		Annotation symbol	CG30415
Feature type	protein_coding_gene	FlyBase ID	FBgn0250838
Gene Model Status	Current	Stock availability	4 publicly available
Also Known As	CG3487
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	59D9-59D9	Sequence location	2R:19,273,201..19,273,969 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG30415 (FBgn0250838). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. The phenotype of these alleles is annotated with: trichogen cell. It has 2 annotated transcripts and 2 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1627732_s_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG30415. Gene sequence location is 2R:19273201..19273969.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 59D9-59D9   Limits computationally determined from genome sequence between P{lacW}l(2)k07136k07136 and P{lacW}l(2)s4830s4830&P{lacW}chrwk06908
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG30415 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG30415-RA FBtr0072030  NM_166599   619   82 CG30415-RB FBtr0072031  NM_166600   657   82
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG30415-PA   FBpp0071939   9.5   82   10.16     NP_726318   AAM68247 CG30415-PB   FBpp0071940   9.5   82   10.16     NP_726319   AAM68248
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE013599 AAM68247   AE013599 AAM68248   AI108393   AI387293   AI387381   AI388033   AI402588   AI945596   AI946077   BG636916   BI232186   BI351694   BI355249   BI366643   BI482592   BI564168   BI567195   BI567411   BI567567   BI567951   BI569273   BI569274   BI569882   BI569999   BI573209   BI573210   BI573292   BI573293   BI576027   BI583571   BI586173   BI588123   BI589724   BI589958   BI590194   BI590213   BI590365   BI590545   BI592527   BI592658   BI592877   BI592989   BI604438   BI604849   BI604859   BI605923   BI606569   BI608512   BI608828   BI609116   BI609666   BI609748   BI611004   BI611509   BI612996   BI612998   BI614062   BI614979   BI615461   BI615469   BI615924   BI616748   BI617215   BI617952   BI618297   BI618619   BI619428   BI619626   BI619765   BI621065   BI622961   BI623371   BI623754   BI626262   BI626591   BI626978   BI628565   BI628955   BI629248   BI629509   BI630215   BI630553   BI634109   BP541489   BP546964   BP554301   BT060452   CB305264   CK086535   CK135280   CO189202   CO288153   CO291043   CO299360   CO299680   CO314271   CO316413   CO317826   CO322602   CO331683   EC079586   EC089591   EC195395   EC204004   EC205365   EC211915   EC216518   EC219422   EC236479   EC242020   EC244547   EC245601   EL870293   EL881097   EV574864   EV575154   EV578601   EV578760   EV579534   EV581457   EV581768   EV582570   EV586720   EV587118   EV588079   EV588627   EV588649   EV588875   EV589306   EV589551   EV589614   EV590020   EV590024   EV591406   EV591585   EV591815   EV592846   EV593014   EV593300   EV594814   EV596059   EV596803
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q0E8X7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    1347.225 Larval Midgut    2491.9 Larval Hindgut    2871.5 Larval Malpighian Tubules    1943.1 Larval Fat Body    1265.7 Larval Salivary Gland    2154.2 Larval Trachea    1729.575 Larval Carcass    3339.55 Adult Head    2555.4 Adult Eye    2748.6 Adult Brain    2063.8 Adult Thoracic-Abdominal Ganglion    2362 Adult Crop    2328.7 Adult Midgut    2696.1 Adult Hindgut    3515.7 Adult Malpighian Tubules    2152 Adult Fat Body    2990.3 Adult Salivary Gland    5327.7 Adult Heart    3148.65 Adult VirginFemale Spermatheca    2805.8 Adult InseminatedFemale Spermatheca    2673.1 Adult Ovary    1334.2 Adult Testis    1087.8 Adult Male Accessory Gland    1249.4 Adult Carcass    4131 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (1347.225) Larval Midgut  (2491.9) Larval Hindgut  (2871.5) Larval Malpighian Tubules  (1943.1) Larval Fat Body  (1265.7) Larval Salivary Gland  (2154.2) Larval Trachea  (1729.575) Larval Carcass  (3339.55) Adult Head  (2555.4) Adult Eye  (2748.6) Adult Brain  (2063.8) Adult Thoracic-Abdominal Ganglion  (2362) Adult Crop  (2328.7) Adult Midgut  (2696.1) Adult Hindgut  (3515.7) Adult Malpighian Tubules  (2152) Adult Fat Body  (2990.3) Adult Salivary Gland  (5327.7) Adult Heart  (3148.65) Adult VirginFemale Spermatheca  (2805.8) Adult InseminatedFemale Spermatheca  (2673.1) Adult Ovary  (1334.2) Adult Testis  (1087.8) Adult Male Accessory Gland  (1249.4) Adult Carcass  (4131) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (1347.225) Larval Midgut  (2491.9) Larval Hindgut  (2871.5) Larval Malpighian Tubules  (1943.1) Larval Fat Body  (1265.7) Larval Salivary Gland  (2154.2) Larval Trachea  (1729.575) Larval Carcass  (3339.55) Adult Head  (2555.4) Adult Eye  (2748.6) Adult Brain  (2063.8) Adult Thoracic-Abdominal Ganglion  (2362) Adult Crop  (2328.7) Adult Midgut  (2696.1) Adult Hindgut  (3515.7) Adult Malpighian Tubules  (2152) Adult Fat Body  (2990.3) Adult Salivary Gland  (5327.7) Adult Heart  (3148.65) Adult VirginFemale Spermatheca  (2805.8) Adult InseminatedFemale Spermatheca  (2673.1) Adult Ovary  (1334.2) Adult Testis  (1087.8) Adult Male Accessory Gland  (1249.4) Adult Carcass  (4131) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    1347.225 Larval Midgut    2491.9 Larval Hindgut    2871.5 Larval Malpighian Tubules    1943.1 Larval Fat Body    1265.7 Larval Salivary Gland    2154.2 Larval Trachea    1729.575 Larval Carcass    3339.55 Adult Head    2555.4 Adult Eye    2748.6 Adult Brain    2063.8 Adult Thoracic-Abdominal Ganglion    2362 Adult Crop    2328.7 Adult Midgut    2696.1 Adult Hindgut    3515.7 Adult Malpighian Tubules    2152 Adult Fat Body    2990.3 Adult Salivary Gland    5327.7 Adult Heart    3148.65 Adult VirginFemale Spermatheca    2805.8 Adult InseminatedFemale Spermatheca    2673.1 Adult Ovary    1334.2 Adult Testis    1087.8 Adult Male Accessory Gland    1249.4 Adult Carcass    4131 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    1347.225 Larval Midgut    2491.9 Larval Hindgut    2871.5 Larval Malpighian Tubules    1943.1 Larval Fat Body    1265.7 Larval Salivary Gland    2154.2 Larval Trachea    1729.575 Larval Carcass    3339.55 Adult Head    2555.4 Adult Eye    2748.6 Adult Brain    2063.8 Adult Thoracic-Abdominal Ganglion    2362 Adult Crop    2328.7 Adult Midgut    2696.1 Adult Hindgut    3515.7 Adult Malpighian Tubules    2152 Adult Fat Body    2990.3 Adult Salivary Gland    5327.7 Adult Heart    3148.65 Adult VirginFemale Spermatheca    2805.8 Adult InseminatedFemale Spermatheca    2673.1 Adult Ovary    1334.2 Adult Testis    1087.8 Adult Male Accessory Gland    1249.4 Adult Carcass    4131 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (1347.225) Larval Midgut  (2491.9) Larval Hindgut  (2871.5) Larval Malpighian Tubules  (1943.1) Larval Fat Body  (1265.7) Larval Salivary Gland  (2154.2) Larval Trachea  (1729.575) Larval Carcass  (3339.55) Adult Head  (2555.4) Adult Eye  (2748.6) Adult Brain  (2063.8) Adult Thoracic-Abdominal Ganglion  (2362) Adult Crop  (2328.7) Adult Midgut  (2696.1) Adult Hindgut  (3515.7) Adult Malpighian Tubules  (2152) Adult Fat Body  (2990.3) Adult Salivary Gland  (5327.7) Adult Heart  (3148.65) Adult VirginFemale Spermatheca  (2805.8) Adult InseminatedFemale Spermatheca  (2673.1) Adult Ovary  (1334.2) Adult Testis  (1087.8) Adult Male Accessory Gland  (1249.4) Adult Carcass  (4131) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  1347.225 Larval Midgut  (2491.9) Larval Hindgut  (2871.5) Larval Malpighian Tubules  (1943.1) Larval Fat Body  1265.7 Larval Salivary Gland  (2154.2) Larval Trachea  (1729.575) Larval Carcass  (3339.55) Adult Head  (2555.4) Adult Eye  (2748.6) Adult Brain  (2063.8) Adult Thoracic-Abdominal Ganglion  (2362) Adult Crop  (2328.7) Adult Midgut  (2696.1) Adult Hindgut  (3515.7) Adult Malpighian Tubules  (2152) Adult Fat Body  (2990.3) Adult Salivary Gland  (5327.7) Adult Heart  (3148.65) Adult VirginFemale Spermatheca  (2805.8) Adult InseminatedFemale Spermatheca  (2673.1) Adult Ovary  1334.2 Adult Testis  1087.8 Adult Male Accessory Gland  1249.4 Adult Carcass  (4131) Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    1347.225 Larval Midgut    2491.9 Larval Hindgut    2871.5 Larval Malpighian Tubules    1943.1 Larval Fat Body    1265.7 Larval Salivary Gland    2154.2 Larval Trachea    1729.575 Larval Carcass    3339.55 Adult Head    2555.4 Adult Eye    2748.6 Adult Brain    2063.8 Adult Thoracic-Abdominal Ganglion    2362 Adult Crop    2328.7 Adult Midgut    2696.1 Adult Hindgut    3515.7 Adult Malpighian Tubules    2152 Adult Fat Body    2990.3 Adult Salivary Gland    5327.7 Adult Heart    3148.65 Adult VirginFemale Spermatheca    2805.8 Adult InseminatedFemale Spermatheca    2673.1 Adult Ovary    1334.2 Adult Testis    1087.8 Adult Male Accessory Gland    1249.4 Adult Carcass    4131 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    2555.4   NA  Eye    2748.6   NA  Brain    2063.8   1347.225  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    2362   NA  Crop    2328.7   2491.9  Midgut    2696.1   2871.5  Hindgut    3515.7   1943.1  Malpighian Tubules    2152   1265.7  Fat Body    2990.3   2154.2  Salivary Gland    5327.7   NA  Heart    3148.65   1729.575  Trachea    NA   NA  VirginFemale Spermatheca    2805.8   NA  InseminatedFemale Spermatheca    2673.1   NA  Ovary    1334.2   NA  Testis    1087.8   NA  Male Accessory Gland    1249.4   3339.55  Carcass    4131 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    145 central nervous system, larvae L3    88 central nervous system, pupae P8    109 head, virgin 1-day female    377 head, virgin 4-day female    187 head, virgin 20-day female    174 head, mated 1-day female    279 head, mated 4-day female    129 head, mated 20-day female    166 head, mated 1-day male    401 head, mated 4-day male    192 head, mated 20-day male    226 salivary gland, larvae L3 wandering    25 salivary gland, white prepupae    39 digestive system, larvae L3 wandering    95 digestive system, 1-day adult    244 digestive system, 4-day adult    158 digestive system, 20-day adult    146 fat body, larvae L3 wandering    66 fat body, white prepupae    43 fat body, pupae P8    196 carcass, larvae L3 wandering    99 carcass, 1-day adult    674 carcass, 4-day adult    317 carcass, 20-day adult    310 ovary, virgin 4-day female    137 ovary, mated 4-day female    131 testis, mated 4-day male    158 accessory gland, mated 4-day male    97 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (145) central nervous system, larvae L3  (88) central nervous system, pupae P8  (109) head, virgin 1-day female  (377) head, virgin 4-day female  (187) head, virgin 20-day female  (174) head, mated 1-day female  (279) head, mated 4-day female  (129) head, mated 20-day female  (166) head, mated 1-day male  (401) head, mated 4-day male  (192) head, mated 20-day male  (226) salivary gland, larvae L3 wandering    25 salivary gland, white prepupae  (39) digestive system, larvae L3 wandering  (95) digestive system, 1-day adult  (244) digestive system, 4-day adult  (158) digestive system, 20-day adult  (146) fat body, larvae L3 wandering  (66) fat body, white prepupae  (43) fat body, pupae P8  (196) carcass, larvae L3 wandering  (99) carcass, 1-day adult  (674) carcass, 4-day adult  (317) carcass, 20-day adult  (310) ovary, virgin 4-day female  (137) ovary, mated 4-day female  (131) testis, mated 4-day male  (158) accessory gland, mated 4-day male  (97) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (145) central nervous system, larvae L3    88 central nervous system, pupae P8  (109) head, virgin 1-day female  (377) head, virgin 4-day female  (187) head, virgin 20-day female  (174) head, mated 1-day female  (279) head, mated 4-day female  (129) head, mated 20-day female  (166) head, mated 1-day male  (401) head, mated 4-day male  (192) head, mated 20-day male  (226) salivary gland, larvae L3 wandering    25 salivary gland, white prepupae    39 digestive system, larvae L3 wandering    95 digestive system, 1-day adult  (244) digestive system, 4-day adult  (158) digestive system, 20-day adult  (146) fat body, larvae L3 wandering    66 fat body, white prepupae    43 fat body, pupae P8  (196) carcass, larvae L3 wandering    99 carcass, 1-day adult  (674) carcass, 4-day adult  (317) carcass, 20-day adult  (310) ovary, virgin 4-day female  (137) ovary, mated 4-day female  (131) testis, mated 4-day male  (158) accessory gland, mated 4-day male    97 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    145 central nervous system, larvae L3    88 central nervous system, pupae P8    109 head, virgin 1-day female    377 head, virgin 4-day female    187 head, virgin 20-day female    174 head, mated 1-day female    279 head, mated 4-day female    129 head, mated 20-day female    166 head, mated 1-day male    401 head, mated 4-day male    192 head, mated 20-day male    226 salivary gland, larvae L3 wandering    25 salivary gland, white prepupae    39 digestive system, larvae L3 wandering    95 digestive system, 1-day adult    244 digestive system, 4-day adult    158 digestive system, 20-day adult    146 fat body, larvae L3 wandering    66 fat body, white prepupae    43 fat body, pupae P8    196 carcass, larvae L3 wandering    99 carcass, 1-day adult    674 carcass, 4-day adult    317 carcass, 20-day adult    310 ovary, virgin 4-day female    137 ovary, mated 4-day female    131 testis, mated 4-day male    158 accessory gland, mated 4-day male    97 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    145 central nervous system, larvae L3    88 central nervous system, pupae P8    109 head, virgin 1-day female    377 head, virgin 4-day female    187 head, virgin 20-day female    174 head, mated 1-day female    279 head, mated 4-day female    129 head, mated 20-day female    166 head, mated 1-day male    401 head, mated 4-day male    192 head, mated 20-day male    226 salivary gland, larvae L3 wandering    25 salivary gland, white prepupae    39 digestive system, larvae L3 wandering    95 digestive system, 1-day adult    244 digestive system, 4-day adult    158 digestive system, 20-day adult    146 fat body, larvae L3 wandering    66 fat body, white prepupae    43 fat body, pupae P8    196 carcass, larvae L3 wandering    99 carcass, 1-day adult    674 carcass, 4-day adult    317 carcass, 20-day adult    310 ovary, virgin 4-day female    137 ovary, mated 4-day female    131 testis, mated 4-day male    158 accessory gland, mated 4-day male    97 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (145) central nervous system, larvae L3  (88) central nervous system, pupae P8  (109) head, virgin 1-day female  (377) head, virgin 4-day female  (187) head, virgin 20-day female  (174) head, mated 1-day female  (279) head, mated 4-day female  (129) head, mated 20-day female  (166) head, mated 1-day male  (401) head, mated 4-day male  (192) head, mated 20-day male  (226) salivary gland, larvae L3 wandering    25 salivary gland, white prepupae  (39) digestive system, larvae L3 wandering  (95) digestive system, 1-day adult  (244) digestive system, 4-day adult  (158) digestive system, 20-day adult  (146) fat body, larvae L3 wandering  (66) fat body, white prepupae  (43) fat body, pupae P8  (196) carcass, larvae L3 wandering  (99) carcass, 1-day adult  (674) carcass, 4-day adult  (317) carcass, 20-day adult  (310) ovary, virgin 4-day female  (137) ovary, mated 4-day female  (131) testis, mated 4-day male  (158) accessory gland, mated 4-day male  (97) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (145) central nervous system, larvae L3    88 central nervous system, pupae P8  109 head, virgin 1-day female  (377) head, virgin 4-day female  (187) head, virgin 20-day female  (174) head, mated 1-day female  (279) head, mated 4-day female  129 head, mated 20-day female  (166) head, mated 1-day male  (401) head, mated 4-day male  (192) head, mated 20-day male  (226) salivary gland, larvae L3 wandering    25 salivary gland, white prepupae    39 digestive system, larvae L3 wandering    95 digestive system, 1-day adult  (244) digestive system, 4-day adult  (158) digestive system, 20-day adult  (146) fat body, larvae L3 wandering    66 fat body, white prepupae    43 fat body, pupae P8  (196) carcass, larvae L3 wandering    99 carcass, 1-day adult  (674) carcass, 4-day adult  (317) carcass, 20-day adult  (310) ovary, virgin 4-day female  137 ovary, mated 4-day female  131 testis, mated 4-day male  (158) accessory gland, mated 4-day male    97 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    145 central nervous system, larvae L3    88 central nervous system, pupae P8    109 head, virgin 1-day female    377 head, virgin 4-day female    187 head, virgin 20-day female    174 head, mated 1-day female    279 head, mated 4-day female    129 head, mated 20-day female    166 head, mated 1-day male    401 head, mated 4-day male    192 head, mated 20-day male    226 salivary gland, larvae L3 wandering    25 salivary gland, white prepupae    39 digestive system, larvae L3 wandering    95 digestive system, 1-day adult    244 digestive system, 4-day adult    158 digestive system, 20-day adult    146 fat body, larvae L3 wandering    66 fat body, white prepupae    43 fat body, pupae P8    196 carcass, larvae L3 wandering    99 carcass, 1-day adult    674 carcass, 4-day adult    317 carcass, 20-day adult    310 ovary, virgin 4-day female    137 ovary, mated 4-day female    131 testis, mated 4-day male    158 accessory gland, mated 4-day male    97 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during late pupal stages, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    198 embryo 02-04hr    230 embryo 04-06hr    229 embryo 06-08hr    154 embryo 08-10hr    151 embryo 10-12hr    216 embryo 12-14hr    203 embryo 14-16hr    309 embryo 16-18hr    330 embryo 18-20hr    348 embryo 20-22hr    426 embryo 22-24hr    484 larva L1    580 larva L2    570 larva L3 12hr old    505 larva L3 puffstage 1-2    300 larva L3 puffstage 3-6    154 larva L3 puffstage 7-9    137 white prepupae new    125 white prepupae 12hr    111 white prepupae 24hr    128 pupae 2d postWPP    254 pupae 3d postWPP    612 pupae 4d postWPP    874 adult male 01day    767 adult male 05day    572 adult male 30day    334 adult female 01day    656 adult female 05day    296 adult female 30day    237 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (198) embryo 02-04hr  (230) embryo 04-06hr  (229) embryo 06-08hr  (154) embryo 08-10hr  (151) embryo 10-12hr  (216) embryo 12-14hr  (203) embryo 14-16hr  (309) embryo 16-18hr  (330) embryo 18-20hr  (348) embryo 20-22hr  (426) embryo 22-24hr  (484) larva L1  (580) larva L2  (570) larva L3 12hr old  (505) larva L3 puffstage 1-2  (300) larva L3 puffstage 3-6  (154) larva L3 puffstage 7-9  (137) white prepupae new  (125) white prepupae 12hr  (111) white prepupae 24hr  (128) pupae 2d postWPP  (254) pupae 3d postWPP  (612) pupae 4d postWPP  (874) adult male 01day  (767) adult male 05day  (572) adult male 30day  (334) adult female 01day  (656) adult female 05day  (296) adult female 30day  (237) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (198) embryo 02-04hr  (230) embryo 04-06hr  (229) embryo 06-08hr  (154) embryo 08-10hr  (151) embryo 10-12hr  (216) embryo 12-14hr  (203) embryo 14-16hr  (309) embryo 16-18hr  (330) embryo 18-20hr  (348) embryo 20-22hr  (426) embryo 22-24hr  (484) larva L1  (580) larva L2  (570) larva L3 12hr old  (505) larva L3 puffstage 1-2  (300) larva L3 puffstage 3-6  (154) larva L3 puffstage 7-9  (137) white prepupae new  (125) white prepupae 12hr  (111) white prepupae 24hr  (128) pupae 2d postWPP  (254) pupae 3d postWPP  (612) pupae 4d postWPP  (874) adult male 01day  (767) adult male 05day  (572) adult male 30day  (334) adult female 01day  (656) adult female 05day  (296) adult female 30day  (237) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    198 embryo 02-04hr    230 embryo 04-06hr    229 embryo 06-08hr    154 embryo 08-10hr    151 embryo 10-12hr    216 embryo 12-14hr    203 embryo 14-16hr    309 embryo 16-18hr    330 embryo 18-20hr    348 embryo 20-22hr    426 embryo 22-24hr    484 larva L1    580 larva L2    570 larva L3 12hr old    505 larva L3 puffstage 1-2    300 larva L3 puffstage 3-6    154 larva L3 puffstage 7-9    137 white prepupae new    125 white prepupae 12hr    111 white prepupae 24hr    128 pupae 2d postWPP    254 pupae 3d postWPP    612 pupae 4d postWPP    874 adult male 01day    767 adult male 05day    572 adult male 30day    334 adult female 01day    656 adult female 05day    296 adult female 30day    237 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    198 embryo 02-04hr    230 embryo 04-06hr    229 embryo 06-08hr    154 embryo 08-10hr    151 embryo 10-12hr    216 embryo 12-14hr    203 embryo 14-16hr    309 embryo 16-18hr    330 embryo 18-20hr    348 embryo 20-22hr    426 embryo 22-24hr    484 larva L1    580 larva L2    570 larva L3 12hr old    505 larva L3 puffstage 1-2    300 larva L3 puffstage 3-6    154 larva L3 puffstage 7-9    137 white prepupae new    125 white prepupae 12hr    111 white prepupae 24hr    128 pupae 2d postWPP    254 pupae 3d postWPP    612 pupae 4d postWPP    874 adult male 01day    767 adult male 05day    572 adult male 30day    334 adult female 01day    656 adult female 05day    296 adult female 30day    237 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (198) embryo 02-04hr  (230) embryo 04-06hr  (229) embryo 06-08hr  (154) embryo 08-10hr  (151) embryo 10-12hr  (216) embryo 12-14hr  (203) embryo 14-16hr  (309) embryo 16-18hr  (330) embryo 18-20hr  (348) embryo 20-22hr  (426) embryo 22-24hr  (484) larva L1  (580) larva L2  (570) larva L3 12hr old  (505) larva L3 puffstage 1-2  (300) larva L3 puffstage 3-6  (154) larva L3 puffstage 7-9  (137) white prepupae new  (125) white prepupae 12hr  (111) white prepupae 24hr  (128) pupae 2d postWPP  (254) pupae 3d postWPP  (612) pupae 4d postWPP  (874) adult male 01day  (767) adult male 05day  (572) adult male 30day  (334) adult female 01day  (656) adult female 05day  (296) adult female 30day  (237) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (198) embryo 02-04hr  (230) embryo 04-06hr  (229) embryo 06-08hr  (154) embryo 08-10hr  (151) embryo 10-12hr  (216) embryo 12-14hr  (203) embryo 14-16hr  (309) embryo 16-18hr  (330) embryo 18-20hr  (348) embryo 20-22hr  (426) embryo 22-24hr  (484) larva L1  (580) larva L2  (570) larva L3 12hr old  (505) larva L3 puffstage 1-2  (300) larva L3 puffstage 3-6  (154) larva L3 puffstage 7-9  137 white prepupae new  125 white prepupae 12hr  111 white prepupae 24hr  128 pupae 2d postWPP  (254) pupae 3d postWPP  (612) pupae 4d postWPP  (874) adult male 01day  (767) adult male 05day  (572) adult male 30day  (334) adult female 01day  (656) adult female 05day  (296) adult female 30day  (237) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    198 embryo 02-04hr    230 embryo 04-06hr    229 embryo 06-08hr    154 embryo 08-10hr    151 embryo 10-12hr    216 embryo 12-14hr    203 embryo 14-16hr    309 embryo 16-18hr    330 embryo 18-20hr    348 embryo 20-22hr    426 embryo 22-24hr    484 larva L1    580 larva L2    570 larva L3 12hr old    505 larva L3 puffstage 1-2    300 larva L3 puffstage 3-6    154 larva L3 puffstage 7-9    137 white prepupae new    125 white prepupae 12hr    111 white prepupae 24hr    128 pupae 2d postWPP    254 pupae 3d postWPP    612 pupae 4d postWPP    874 adult male 01day    767 adult male 05day    572 adult male 30day    334 adult female 01day    656 adult female 05day    296 adult female 30day    237 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    128 Schneider line 2 Sg4    100 embryonic 1182-4H    104 embryonic GM2    64 embryonic Kc167    103 embryonic S1    230 embryonic S3    149 leg disc CME L1    146 wing disc CME-W2    164 wing disc ML-DmD8    82 wing disc ML-DmD9    143 wing disc ML-DmD16-c3    136 wing disc ML-DmD21    178 wing disc ML-DmD32    112 haltere disc ML-DmD17-c3    190 eye-antennal disc ML-DmD11    275 antennal disc ML-DmD20-c5    199 mixed discs ML-DmD4-c1    111 CNS ML-DmBG1-c1    228 CNS ML-DmBG2-c2    62 tumorous blood cells mbn2    61 ovary fGS/OSS    90 ovary OSC    140 ovary OSS    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (128) Schneider line 2 Sg4  (100) embryonic 1182-4H  (104) embryonic GM2  (64) embryonic Kc167  (103) embryonic S1  (230) embryonic S3  (149) leg disc CME L1  (146) wing disc CME-W2  (164) wing disc ML-DmD8  (82) wing disc ML-DmD9  (143) wing disc ML-DmD16-c3  (136) wing disc ML-DmD21  (178) wing disc ML-DmD32  (112) haltere disc ML-DmD17-c3  (190) eye-antennal disc ML-DmD11  (275) antennal disc ML-DmD20-c5  (199) mixed discs ML-DmD4-c1  (111) CNS ML-DmBG1-c1  (228) CNS ML-DmBG2-c2  (62) tumorous blood cells mbn2  (61) ovary fGS/OSS  (90) ovary OSC  (140) ovary OSS  (42) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (128) Schneider line 2 Sg4    100 embryonic 1182-4H  104 embryonic GM2    64 embryonic Kc167  103 embryonic S1  (230) embryonic S3  (149) leg disc CME L1  (146) wing disc CME-W2  (164) wing disc ML-DmD8    82 wing disc ML-DmD9  (143) wing disc ML-DmD16-c3  (136) wing disc ML-DmD21  (178) wing disc ML-DmD32  (112) haltere disc ML-DmD17-c3  (190) eye-antennal disc ML-DmD11  (275) antennal disc ML-DmD20-c5  (199) mixed discs ML-DmD4-c1  (111) CNS ML-DmBG1-c1  (228) CNS ML-DmBG2-c2    62 tumorous blood cells mbn2    61 ovary fGS/OSS    90 ovary OSC  (140) ovary OSS    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    128 Schneider line 2 Sg4    100 embryonic 1182-4H    104 embryonic GM2    64 embryonic Kc167    103 embryonic S1    230 embryonic S3    149 leg disc CME L1    146 wing disc CME-W2    164 wing disc ML-DmD8    82 wing disc ML-DmD9    143 wing disc ML-DmD16-c3    136 wing disc ML-DmD21    178 wing disc ML-DmD32    112 haltere disc ML-DmD17-c3    190 eye-antennal disc ML-DmD11    275 antennal disc ML-DmD20-c5    199 mixed discs ML-DmD4-c1    111 CNS ML-DmBG1-c1    228 CNS ML-DmBG2-c2    62 tumorous blood cells mbn2    61 ovary fGS/OSS    90 ovary OSC    140 ovary OSS    42 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    128 Schneider line 2 Sg4    100 embryonic 1182-4H    104 embryonic GM2    64 embryonic Kc167    103 embryonic S1    230 embryonic S3    149 leg disc CME L1    146 wing disc CME-W2    164 wing disc ML-DmD8    82 wing disc ML-DmD9    143 wing disc ML-DmD16-c3    136 wing disc ML-DmD21    178 wing disc ML-DmD32    112 haltere disc ML-DmD17-c3    190 eye-antennal disc ML-DmD11    275 antennal disc ML-DmD20-c5    199 mixed discs ML-DmD4-c1    111 CNS ML-DmBG1-c1    228 CNS ML-DmBG2-c2    62 tumorous blood cells mbn2    61 ovary fGS/OSS    90 ovary OSC    140 ovary OSS    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (128) Schneider line 2 Sg4  (100) embryonic 1182-4H  (104) embryonic GM2  (64) embryonic Kc167  (103) embryonic S1  (230) embryonic S3  (149) leg disc CME L1  (146) wing disc CME-W2  (164) wing disc ML-DmD8  (82) wing disc ML-DmD9  (143) wing disc ML-DmD16-c3  (136) wing disc ML-DmD21  (178) wing disc ML-DmD32  (112) haltere disc ML-DmD17-c3  (190) eye-antennal disc ML-DmD11  (275) antennal disc ML-DmD20-c5  (199) mixed discs ML-DmD4-c1  (111) CNS ML-DmBG1-c1  (228) CNS ML-DmBG2-c2  (62) tumorous blood cells mbn2  (61) ovary fGS/OSS  (90) ovary OSC  (140) ovary OSS  (42) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  128 Schneider line 2 Sg4    100 embryonic 1182-4H  104 embryonic GM2    64 embryonic Kc167  103 embryonic S1  (230) embryonic S3  (149) leg disc CME L1  (146) wing disc CME-W2  (164) wing disc ML-DmD8    82 wing disc ML-DmD9  143 wing disc ML-DmD16-c3  136 wing disc ML-DmD21  (178) wing disc ML-DmD32  112 haltere disc ML-DmD17-c3  (190) eye-antennal disc ML-DmD11  (275) antennal disc ML-DmD20-c5  (199) mixed discs ML-DmD4-c1  111 CNS ML-DmBG1-c1  (228) CNS ML-DmBG2-c2    62 tumorous blood cells mbn2    61 ovary fGS/OSS    90 ovary OSC  140 ovary OSS    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    128 Schneider line 2 Sg4    100 embryonic 1182-4H    104 embryonic GM2    64 embryonic Kc167    103 embryonic S1    230 embryonic S3    149 leg disc CME L1    146 wing disc CME-W2    164 wing disc ML-DmD8    82 wing disc ML-DmD9    143 wing disc ML-DmD16-c3    136 wing disc ML-DmD21    178 wing disc ML-DmD32    112 haltere disc ML-DmD17-c3    190 eye-antennal disc ML-DmD11    275 antennal disc ML-DmD20-c5    199 mixed discs ML-DmD4-c1    111 CNS ML-DmBG1-c1    228 CNS ML-DmBG2-c2    62 tumorous blood cells mbn2    61 ovary fGS/OSS    90 ovary OSC    140 ovary OSS    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    126 cold shock, 4-day adult    97 heat shock, 4-day adult    304 Cadmium 50 mM 6 hrs, larvae L3    322 Cadmium 50 mM 12 hrs, larvae L3    235 Cadmium 50 mM 48 hrs, 4-day adult    280 Cadmium 100 mM 48 hrs, 4-day adult    171 Copper 0.5 mM 12 hrs, larvae L3    320 Copper 15 mM 48 hrs, 4-day adult    95 Zinc 5 mM 12 hrs, larvae L3    177 Zinc 4.5 mM 48 hrs, 4-day adult    118 Ethanol 2.5% 3 hrs, larvae L3    276 Ethanol 5% 3 hrs, larvae L3    388 Ethanol 10% 3 hrs, larvae L3    431 Caffeine 1.5 mg/ml 4 hrs, larvae L3    294 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    200 Caffeine 25 mg/ml 48 hrs, 4-day adult    97 Paraquat 5 mM 48 hrs, 4-day adult    300 Paraquat 10 mM 48 hrs, 4-day adult    263 Rotenone 2 μg 12 hrs, larvae L3    407 Rotenone 8 μg 12 hrs, larvae L3    527 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (126) cold shock, 4-day adult  (97) heat shock, 4-day adult  (304) Cadmium 50 mM 6 hrs, larvae L3  (322) Cadmium 50 mM 12 hrs, larvae L3  (235) Cadmium 50 mM 48 hrs, 4-day adult  (280) Cadmium 100 mM 48 hrs, 4-day adult  (171) Copper 0.5 mM 12 hrs, larvae L3  (320) Copper 15 mM 48 hrs, 4-day adult  (95) Zinc 5 mM 12 hrs, larvae L3  (177) Zinc 4.5 mM 48 hrs, 4-day adult  (118) Ethanol 2.5% 3 hrs, larvae L3  (276) Ethanol 5% 3 hrs, larvae L3  (388) Ethanol 10% 3 hrs, larvae L3  (431) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (294) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (200) Caffeine 25 mg/ml 48 hrs, 4-day adult  (97) Paraquat 5 mM 48 hrs, 4-day adult  (300) Paraquat 10 mM 48 hrs, 4-day adult  (263) Rotenone 2 μg 12 hrs, larvae L3  (407) Rotenone 8 μg 12 hrs, larvae L3  (527) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (126) cold shock, 4-day adult    97 heat shock, 4-day adult  (304) Cadmium 50 mM 6 hrs, larvae L3  (322) Cadmium 50 mM 12 hrs, larvae L3  (235) Cadmium 50 mM 48 hrs, 4-day adult  (280) Cadmium 100 mM 48 hrs, 4-day adult  (171) Copper 0.5 mM 12 hrs, larvae L3  (320) Copper 15 mM 48 hrs, 4-day adult    95 Zinc 5 mM 12 hrs, larvae L3  (177) Zinc 4.5 mM 48 hrs, 4-day adult  (118) Ethanol 2.5% 3 hrs, larvae L3  (276) Ethanol 5% 3 hrs, larvae L3  (388) Ethanol 10% 3 hrs, larvae L3  (431) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (294) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (200) Caffeine 25 mg/ml 48 hrs, 4-day adult    97 Paraquat 5 mM 48 hrs, 4-day adult  (300) Paraquat 10 mM 48 hrs, 4-day adult  (263) Rotenone 2 μg 12 hrs, larvae L3  (407) Rotenone 8 μg 12 hrs, larvae L3  (527) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    126 cold shock, 4-day adult    97 heat shock, 4-day adult    304 Cadmium 50 mM 6 hrs, larvae L3    322 Cadmium 50 mM 12 hrs, larvae L3    235 Cadmium 50 mM 48 hrs, 4-day adult    280 Cadmium 100 mM 48 hrs, 4-day adult    171 Copper 0.5 mM 12 hrs, larvae L3    320 Copper 15 mM 48 hrs, 4-day adult    95 Zinc 5 mM 12 hrs, larvae L3    177 Zinc 4.5 mM 48 hrs, 4-day adult    118 Ethanol 2.5% 3 hrs, larvae L3    276 Ethanol 5% 3 hrs, larvae L3    388 Ethanol 10% 3 hrs, larvae L3    431 Caffeine 1.5 mg/ml 4 hrs, larvae L3    294 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    200 Caffeine 25 mg/ml 48 hrs, 4-day adult    97 Paraquat 5 mM 48 hrs, 4-day adult    300 Paraquat 10 mM 48 hrs, 4-day adult    263 Rotenone 2 μg 12 hrs, larvae L3    407 Rotenone 8 μg 12 hrs, larvae L3    527 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    126 cold shock, 4-day adult    97 heat shock, 4-day adult    304 Cadmium 50 mM 6 hrs, larvae L3    322 Cadmium 50 mM 12 hrs, larvae L3    235 Cadmium 50 mM 48 hrs, 4-day adult    280 Cadmium 100 mM 48 hrs, 4-day adult    171 Copper 0.5 mM 12 hrs, larvae L3    320 Copper 15 mM 48 hrs, 4-day adult    95 Zinc 5 mM 12 hrs, larvae L3    177 Zinc 4.5 mM 48 hrs, 4-day adult    118 Ethanol 2.5% 3 hrs, larvae L3    276 Ethanol 5% 3 hrs, larvae L3    388 Ethanol 10% 3 hrs, larvae L3    431 Caffeine 1.5 mg/ml 4 hrs, larvae L3    294 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    200 Caffeine 25 mg/ml 48 hrs, 4-day adult    97 Paraquat 5 mM 48 hrs, 4-day adult    300 Paraquat 10 mM 48 hrs, 4-day adult    263 Rotenone 2 μg 12 hrs, larvae L3    407 Rotenone 8 μg 12 hrs, larvae L3    527 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (126) cold shock, 4-day adult  (97) heat shock, 4-day adult  (304) Cadmium 50 mM 6 hrs, larvae L3  (322) Cadmium 50 mM 12 hrs, larvae L3  (235) Cadmium 50 mM 48 hrs, 4-day adult  (280) Cadmium 100 mM 48 hrs, 4-day adult  (171) Copper 0.5 mM 12 hrs, larvae L3  (320) Copper 15 mM 48 hrs, 4-day adult  (95) Zinc 5 mM 12 hrs, larvae L3  (177) Zinc 4.5 mM 48 hrs, 4-day adult  (118) Ethanol 2.5% 3 hrs, larvae L3  (276) Ethanol 5% 3 hrs, larvae L3  (388) Ethanol 10% 3 hrs, larvae L3  (431) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (294) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (200) Caffeine 25 mg/ml 48 hrs, 4-day adult  (97) Paraquat 5 mM 48 hrs, 4-day adult  (300) Paraquat 10 mM 48 hrs, 4-day adult  (263) Rotenone 2 μg 12 hrs, larvae L3  (407) Rotenone 8 μg 12 hrs, larvae L3  (527) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  126 cold shock, 4-day adult    97 heat shock, 4-day adult  (304) Cadmium 50 mM 6 hrs, larvae L3  (322) Cadmium 50 mM 12 hrs, larvae L3  (235) Cadmium 50 mM 48 hrs, 4-day adult  (280) Cadmium 100 mM 48 hrs, 4-day adult  (171) Copper 0.5 mM 12 hrs, larvae L3  (320) Copper 15 mM 48 hrs, 4-day adult    95 Zinc 5 mM 12 hrs, larvae L3  (177) Zinc 4.5 mM 48 hrs, 4-day adult  118 Ethanol 2.5% 3 hrs, larvae L3  (276) Ethanol 5% 3 hrs, larvae L3  (388) Ethanol 10% 3 hrs, larvae L3  (431) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (294) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (200) Caffeine 25 mg/ml 48 hrs, 4-day adult    97 Paraquat 5 mM 48 hrs, 4-day adult  (300) Paraquat 10 mM 48 hrs, 4-day adult  (263) Rotenone 2 μg 12 hrs, larvae L3  (407) Rotenone 8 μg 12 hrs, larvae L3  (527) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    126 cold shock, 4-day adult    97 heat shock, 4-day adult    304 Cadmium 50 mM 6 hrs, larvae L3    322 Cadmium 50 mM 12 hrs, larvae L3    235 Cadmium 50 mM 48 hrs, 4-day adult    280 Cadmium 100 mM 48 hrs, 4-day adult    171 Copper 0.5 mM 12 hrs, larvae L3    320 Copper 15 mM 48 hrs, 4-day adult    95 Zinc 5 mM 12 hrs, larvae L3    177 Zinc 4.5 mM 48 hrs, 4-day adult    118 Ethanol 2.5% 3 hrs, larvae L3    276 Ethanol 5% 3 hrs, larvae L3    388 Ethanol 10% 3 hrs, larvae L3    431 Caffeine 1.5 mg/ml 4 hrs, larvae L3    294 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    200 Caffeine 25 mg/ml 48 hrs, 4-day adult    97 Paraquat 5 mM 48 hrs, 4-day adult    300 Paraquat 10 mM 48 hrs, 4-day adult    263 Rotenone 2 μg 12 hrs, larvae L3    407 Rotenone 8 μg 12 hrs, larvae L3    527 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_15 mE1_20_mRNA_expression_cluster_10
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0250838
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG30415GD4547 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 CG30415GD4547 Phenotype manifest in Allele trichogen cell, with Scer\GAL4pnr-MD237 CG30415GD4547
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG30415 Class Mutagen Stocks Known lesion CG30415EY04039 P-element activity 2 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG30415 Class Mutagen Stocks Known lesion CG30415GD4547 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG30415KK111687 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel7178 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4547} NA P{KK111687} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}CG30415EY04039 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG30415 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 73156 DroID - A comprehensive database of gene and protein interactions. • FBgn0250838 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 246602
Orthologs
OrthoDB Orthologs (34) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6F1XPV Dipteran inclusive ortholog search EOG6F4SMQ Insect inclusive ortholog search EOG6RR5FF Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6F1XPV)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG30415     Drosophila simulans   Dsim\GD25053 Y   Drosophila sechellia   Dsec\GM15550 Y   Drosophila erecta   Dere\GG20036 Y   Drosophila yakuba   Dyak\GE11573 Y   Drosophila ananassae   Dana\GF11854 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA15829 Y   Drosophila persimilis   Dper\GL17567 Y   Drosophila willistoni   Dwil\GK23061 Y   Drosophila virilis   Dvir\GJ22360 Y   Drosophila mojavensis   Dmoj\GI20508 Y   Drosophila grimshawi   Dgri\GH21223 Y
Orthologs in non-Drosophila Dipterans (EOG6F4SMQ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL014039   Anopheles gambiae Malaria mosquito  Agam\AGAP000669   Anopheles gambiae Malaria mosquito  Agam\AGAP007630   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ009672
Orthologs in non-Dipteran Insects (EOG6RR5FF)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB44683   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG011115   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH11806   Atta cephalotes Leafcutter ant  Acep\ACEP27377   Camponotus floridanus Florida carpenter ant  Cflo\CFLO18968   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL13947   Linepithema humile Argentine ant  Lhum\LH13158   Pogonomyrmex barbatus Red harvester ant  Pbar\PB13541   Solenopsis invicta Red fire ant  Sinv\SINV13528   Acyrthosiphon pisum Pea aphid  Apim\ACYPI005971   Acyrthosiphon pisum Pea aphid  Apim\ACYPI063346   Acyrthosiphon pisum Pea aphid  Apim\ACYPI086436   Acyrthosiphon pisum Pea aphid  Apim\ACYPI008706   Acyrthosiphon pisum Pea aphid  Apim\ACYPI071417   Acyrthosiphon pisum Pea aphid  Apim\ACYPI004764   Bombyx mori Silkmoth  Bmor\BGIBMGA000759   Pediculus humanus Human body louse  Phum\PHUM608050   Tribolium castaneum Red flour beetle  Tcas\TC010589
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD25053 Drosophila sechellia Dsec\GM15550 Drosophila erecta Dere\GG20036 Drosophila yakuba Dyak\GE11573 Drosophila ananassae Dana\GF11854 Drosophila pseudoobscura pseudoobscura Dpse\GA15829 Drosophila persimilis Dper\GL17567 Drosophila willistoni Dwil\GK23061 Drosophila virilis Dvir\GJ22360 Drosophila mojavensis Dmoj\GI20508 Drosophila grimshawi Dgri\GH21223
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	15710 y1 w67c23; P{EPgy2}CG30415EY04039/CyO
Kyoto	114630 yd2 w1118 P{ey-FLP.N}2; P{neoFRT}42D P{EPgy2}CG30415EY04039 /CyO y+
VDRC	v106403 P{KK111687}VIE-260B v10595 w1118; P{GD4547}v10595
Genomic Clones ( 2 )
	BACR04G19 BACR25I01 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 137 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RH51119
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH07219 GH17784 GH17895 GH18764 GH21835 GM15733 GM30104 RE28213 RE52225 RE65305 RH02057 RH02223 RH02964 RH03202 RH03486 RH03782 RH03805 RH03973 RH04180 RH10241 RH10411 RH10681 RH10843 RH13071 RH13534 RH13860 RH14476 RH14569 RH17072 RH17827 RH22220 RH26025 RH29193 RH32494 RH35902 RH37039 RH37058 RH37323 RH37784 RH37991 RH39265 RH42043 RH42045 RH43345 RH44486 RH45115 RH45124 RH45825 RH46811 RH47478 RH48444 RH48912 RH49487 RH50462 RH50701 RH50871 RH52351 RH55010 RH55603 RH56087 RH57009 RH57729 RH58086 RH58386 RH59213 RH59823 RH66830 RH67579 RH68140 RH69786 RH70336 RH70348 RH71938 RH73124 SD14739
Other clones	19177 50245 62695 97060 161199 164749 273717 281303 bs14f04 bs20f03 CK01.53D.E5 CK01.85D.E8 CK01.98B.E11 CK01.112B.G9 Dmel_dig_001075_0710_0304 Dmel_dig_001564_0693_0442 Dmel_dig_003309_0660_3766 Dmel_dig_007354_0681_0467 Dmel_dig_010072_0635_2312 Dmel_dig_012020_0688_1929 Dmel_dig_018599_0631_3426 Dmel_dig_019639_0592_0899 Dmel_neb_001766_0428_3614 Dmel_neb_008154_0833_3119 Dmel_neb_009752_0683_1705 Dmel_neb_010105_0112_0706 Dmel_neb_010575_0326_3301 Dmel_neb_011272_0695_2218 Dmel_neb_011767_0425_0402 Dmel_neb_011850_0144_2597 Dmel_neb_012193_0654_3097 Dmel_neb_012475_0387_0915 Dmel_neb_012625_0158_2533 Dmel_neb_012938_0355_2711 Dmel_neb_013415_0179_0734 Dmel_neb_013644_0400_1123 Dmel_neb_013885_0192_0397 Dmel_neb_013911_0355_2328 Dmel_neb_013986_0670_2300 Dmel_neb_014159_0652_3104 Dmel_neb_015179_0325_1955 Dmel_neb_015476_0159_2044 EK043419 EK067852 EK075920 EK175148 EK176323 EK188461 EK235562 EK264864 EK269150 EK301048 FGC002C02 FGH112A02 FGM229B04 IP02386 IP10908 Nfly-079 RH01394 RH08922 RH08972
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0250838 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 246602
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG30415 anon-SAGE:Wang-079 (FlyBase, 1996-)
Additional comments	Annotation CG3487 split into CG30414 and CG30415 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_166599 NM_166600 RefSeq (Proteins) • NP_726318 NP_726319 DDBJ / EMBL / GenBank • AAM68247 AAM68248 AI387381 AI945596 AI946077 CB305264 Entrez Gene - A searchable database of RefSeq genes. • 246602 UniProtKB/TrEMBL • Q0E8X7
Other Crossreferences
Linkouts
	BioGRID - A database of protein and genetic interactions • 73156 DroID - A comprehensive database of gene and protein interactions. • FBgn0250838 DRSC - Results from RNAi screens. • FBgn0250838 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0250838 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0250838 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 246602 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 246602 modMine - Data generated by the modENCODE project. • FBgn0250838
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	anon-SAGE:Wang-079   CG3487 (Oliver, 2001.8.16, Mount, 2001.8.14, ) CG30415 (Keleman et al., 2009.8.5, Cammarato et al., 2011, Ladoukakis et al., 2011)
Name Synonym	anon-SAGE:Wang-079
Secondary FlyBase IDs
	FBgn0034857 FBgn0050415 FBgn0066919
References ( 17 )
Research paper	Tan et al., 2012, G3 (Bethesda) 2(3): 393--405 Genetic screen for regulators of lymph gland homeostasis and hemocyte maturation in Drosophila. [FBrf0217733] Ladoukakis et al., 2011, Genome Biol. 12(11): R118 Hundreds of putatively functional small open reading frames in Drosophila. [FBrf0218190]
Supplementary material	Cammarato et al., 2011, PLoS ONE 6(4): Table S1. Proteins & Peptides. [FBrf0214682] Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] Khanna et al., 2010, BMC Genomics 11(1): Towards a membrane proteome in Drosophila: a method for the isolation of plasma membrane. [FBrf0210978] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Mount, 2001.8.14, Intron annotations. Intron annotations. [FBrf0137489] Oliver, 2001.8.16, Genome Res.: File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492]
FlyBase analysis	FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Curated genome annotation	FamiliarityBreedsContempt, 1999.11, [Automatic annotations performed at the Celera Jamboreee.] [Automatic annotations performed at the Celera Jamboreee.] [FBrf0126705] Gong, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126669]