• Home
• Tools
  • Tools Overview
  • Query Tools

    
    • QuickSearch
    • QueryBuilder
    • TermLink
    • CytoSearch
    • Interactions Browser
    • ImageBrowse
    • Find A Person
    • Google™ FlyBase
  • Genomic/Map Tools

    
    • BLAST
    • GBrowse
    • CytoSearch
    • Aberrations Maps
    • Chromosome Maps
    • Coordinates Converter
  • Retrieve/Convert

    
    • Batch Download
    • Coordinates Converter
    • ID Converter
  • Data Submission

    
    • Fast-Track Your Paper
    • Submit Personal Comm
    • Add A New Person
    • Update Person Info
  • People

    
    • Find A Person
    • Add A New Person
    • Update Person Info
• Files
  • Files Overview
  • Downloads:
  • Precomputed files
  • Archived data
  • Releases (FTP)
  • Genomes (FTP)
  • AAA data (FTP)
  • Lists:
  • Transposons (Dmel)
  • Transposons (other)
  • Vectors & Constructs
  • Anatomical Terms
  • Map Conversion
• Species
  • Phylogeny
  • Sequenced Species
  • Synteny Table
  • Color Illustrations
  • Abbreviations
• Documents
  • About FlyBase
  • Reference Manual:
  • Sections
  • Contents
  • Nomenclature
  • Release Notes
• Resources
  • All Resources
  • Model Organisms
  • Stock Collections
  • Other links:
  • BDGP
  • DGRC
  • FlyExpress
  • Interactive Fly
  • modENCODE
  • Textpresso for Fly
• News
  • News
  • FlyBase Forum
  • FlyBase Positions
  • Meetings
  • Courses
  • Fly Board
  • White papers
  • Funding
  • bionet.dros
• Help
  • Google™ FlyBase
  • Site Map
  • FAQs
  • FlyBase Guides
  • Video Tutorials
  • Report help
  • New to Flies
  • Pers. comm.
  • Author guidelines
  • Contact FlyBase
• Archives
  • Prior Release
  • Other Archives
  • Coordinate Converter

Gene Dmel\rig

General Information
Symbol	Dmel\rig	Species	D. melanogaster
Name	rigor mortis	Annotation symbol	CG30149
Feature type	protein_coding_gene	FlyBase ID	FBgn0250850
Gene Model Status	Current	Stock availability	10 publicly available
Also Known As	l(2)05056
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	57A8-57A8	Sequence location	2R:16,521,381..16,528,191 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene rigor mortis is referred to in FlyBase by the symbol Dmel\rig (CG30149, FBgn0250850). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding. There is experimental evidence that it is involved in the biological process: response to ecdysone; molting cycle, chitin-based cuticle. 10 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: WD40 repeat; WD40 repeat, conserved site; WD40 repeat, subgroup; WD40 repeat-like-containing domain; WD40/YVTN repeat-like-containing domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval trachea. Comments on Affy2 ProbeSet: ProbeSet 1640239_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of rig. Gene sequence location is 2R:16521381..16528191.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN24539 HFA06400 HFA06053
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 57A8-57A8   Limits computationally determined from genome sequence between P{EP}l(2)05510EP2587&P{lacW}rigk07917 and P{lacW}l(2)k02206k02206
Experimentally Determined Cytological Location
Cytogenetic map Notes References 57A5-57A6   (determined by in situ hybridisation)   (Spradling et al., 1999) 57A7-57A9     (BDGP Project Members, 1994-1999)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\rig for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) rig-RB FBtr0086252  NM_137655   4128   1235
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein rig-PB   FBpp0085564   137.8   1235   6.76     NP_611499   AAF57440
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • WD40/YVTN repeat-like-containing domain (IPR015943) WD40 repeat (IPR001680) WD40 repeat-like-containing domain (IPR011046) WD40 repeat, conserved site (IPR019775) WD40 repeat, subgroup (IPR019781)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA392585   AA735433   AA735657   AA817393   AA820642   AA940937   AA978584   AA978626   AA990841   AE013599 AAF57440   AI257710   AI516393   AI516560   AI518841   AI531051   AI532225   AI532233   AI543908   AI546349   AQ034008   AW944321   AY274835 AAP31582   BI369008   BI375922   BT003437 AAO39440   CB305317   CO303396   CO333695   CZ470236   CZ470269   EC067975   EC084658   EC248950   EC256515   EV584709   EV593170   EV597168   EV598296
UniProtKB/Swiss-Prot	Q86BY9
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0250850    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0250850 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0250850 expression level Developmental Stage   Expression Level embryo 00-02hr    6471 embryo 02-04hr    2739 embryo 04-06hr    572 embryo 06-08hr    274 embryo 08-10hr    241 embryo 10-12hr    134 embryo 12-14hr    247 embryo 14-16hr    338 embryo 16-18hr    237 embryo 18-20hr    165 embryo 20-22hr    297 embryo 22-24hr    254 larva L1    308 larva L2    387 larva L3 12hr old    420 larva L3 puffstage 1-2    472 larva L3 puffstage 3-6    764 larva L3 puffstage 7-9    757 white prepupae new    682 white prepupae 12hr    989 white prepupae 24hr    1017 pupae 2d postWPP    559 pupae 3d postWPP    276 pupae 4d postWPP    271 adult male 01day    324 adult male 05day    422 adult male 30day    419 adult female 01day    1705 adult female 05day    3581 adult female 30day    3465 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (6471) embryo 02-04hr  (2739) embryo 04-06hr  (572) embryo 06-08hr  (274) embryo 08-10hr  (241) embryo 10-12hr  (134) embryo 12-14hr  (247) embryo 14-16hr  (338) embryo 16-18hr  (237) embryo 18-20hr  (165) embryo 20-22hr  (297) embryo 22-24hr  (254) larva L1  (308) larva L2  (387) larva L3 12hr old  (420) larva L3 puffstage 1-2  (472) larva L3 puffstage 3-6  (764) larva L3 puffstage 7-9  (757) white prepupae new  (682) white prepupae 12hr  (989) white prepupae 24hr  (1017) pupae 2d postWPP  (559) pupae 3d postWPP  (276) pupae 4d postWPP  (271) adult male 01day  (324) adult male 05day  (422) adult male 30day  (419) adult female 01day  (1705) adult female 05day  (3581) adult female 30day  (3465) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (6471) embryo 02-04hr  (2739) embryo 04-06hr    572 embryo 06-08hr    274 embryo 08-10hr    241 embryo 10-12hr    134 embryo 12-14hr    247 embryo 14-16hr    338 embryo 16-18hr    237 embryo 18-20hr    165 embryo 20-22hr    297 embryo 22-24hr    254 larva L1    308 larva L2    387 larva L3 12hr old    420 larva L3 puffstage 1-2    472 larva L3 puffstage 3-6    764 larva L3 puffstage 7-9    757 white prepupae new    682 white prepupae 12hr    989 white prepupae 24hr    1017 pupae 2d postWPP    559 pupae 3d postWPP    276 pupae 4d postWPP    271 adult male 01day    324 adult male 05day    422 adult male 30day    419 adult female 01day  (1705) adult female 05day  (3581) adult female 30day  (3465) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    6471 embryo 02-04hr    2739 embryo 04-06hr    572 embryo 06-08hr    274 embryo 08-10hr    241 embryo 10-12hr    134 embryo 12-14hr    247 embryo 14-16hr    338 embryo 16-18hr    237 embryo 18-20hr    165 embryo 20-22hr    297 embryo 22-24hr    254 larva L1    308 larva L2    387 larva L3 12hr old    420 larva L3 puffstage 1-2    472 larva L3 puffstage 3-6    764 larva L3 puffstage 7-9    757 white prepupae new    682 white prepupae 12hr    989 white prepupae 24hr    1017 pupae 2d postWPP    559 pupae 3d postWPP    276 pupae 4d postWPP    271 adult male 01day    324 adult male 05day    422 adult male 30day    419 adult female 01day    1705 adult female 05day    3581 adult female 30day    3465 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    6471 embryo 02-04hr    2739 embryo 04-06hr    572 embryo 06-08hr    274 embryo 08-10hr    241 embryo 10-12hr    134 embryo 12-14hr    247 embryo 14-16hr    338 embryo 16-18hr    237 embryo 18-20hr    165 embryo 20-22hr    297 embryo 22-24hr    254 larva L1    308 larva L2    387 larva L3 12hr old    420 larva L3 puffstage 1-2    472 larva L3 puffstage 3-6    764 larva L3 puffstage 7-9    757 white prepupae new    682 white prepupae 12hr    989 white prepupae 24hr    1017 pupae 2d postWPP    559 pupae 3d postWPP    276 pupae 4d postWPP    271 adult male 01day    324 adult male 05day    422 adult male 30day    419 adult female 01day    1705 adult female 05day    3581 adult female 30day    3465 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0250850 expression level Developmental Stage   Expression Level embryo 00-02hr    6471 embryo 02-04hr    2739 embryo 04-06hr    572 embryo 06-08hr    274 embryo 08-10hr    241 embryo 10-12hr    134 embryo 12-14hr    247 embryo 14-16hr    338 embryo 16-18hr    237 embryo 18-20hr    165 embryo 20-22hr    297 embryo 22-24hr    254 larva L1    308 larva L2    387 larva L3 12hr old    420 larva L3 puffstage 1-2    472 larva L3 puffstage 3-6    764 larva L3 puffstage 7-9    757 white prepupae new    682 white prepupae 12hr    989 white prepupae 24hr    1017 pupae 2d postWPP    559 pupae 3d postWPP    276 pupae 4d postWPP    271 adult male 01day    324 adult male 05day    422 adult male 30day    419 adult female 01day    1705 adult female 05day    3581 adult female 30day    3465 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (6471) embryo 02-04hr  (2739) embryo 04-06hr  (572) embryo 06-08hr  (274) embryo 08-10hr  (241) embryo 10-12hr  134 embryo 12-14hr  (247) embryo 14-16hr  (338) embryo 16-18hr  (237) embryo 18-20hr  (165) embryo 20-22hr  (297) embryo 22-24hr  (254) larva L1  (308) larva L2  (387) larva L3 12hr old  (420) larva L3 puffstage 1-2  (472) larva L3 puffstage 3-6  (764) larva L3 puffstage 7-9  (757) white prepupae new  (682) white prepupae 12hr  (989) white prepupae 24hr  (1017) pupae 2d postWPP  (559) pupae 3d postWPP  (276) pupae 4d postWPP  (271) adult male 01day  (324) adult male 05day  (422) adult male 30day  (419) adult female 01day  (1705) adult female 05day  (3581) adult female 30day  (3465) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (6471) embryo 02-04hr  (2739) embryo 04-06hr    572 embryo 06-08hr    274 embryo 08-10hr    241 embryo 10-12hr    134 embryo 12-14hr    247 embryo 14-16hr    338 embryo 16-18hr    237 embryo 18-20hr    165 embryo 20-22hr    297 embryo 22-24hr    254 larva L1    308 larva L2    387 larva L3 12hr old    420 larva L3 puffstage 1-2    472 larva L3 puffstage 3-6    764 larva L3 puffstage 7-9    757 white prepupae new    682 white prepupae 12hr    989 white prepupae 24hr    1017 pupae 2d postWPP    559 pupae 3d postWPP    276 pupae 4d postWPP    271 adult male 01day    324 adult male 05day    422 adult male 30day    419 adult female 01day  1705 adult female 05day  (3581) adult female 30day  (3465) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    6471 embryo 02-04hr    2739 embryo 04-06hr    572 embryo 06-08hr    274 embryo 08-10hr    241 embryo 10-12hr    134 embryo 12-14hr    247 embryo 14-16hr    338 embryo 16-18hr    237 embryo 18-20hr    165 embryo 20-22hr    297 embryo 22-24hr    254 larva L1    308 larva L2    387 larva L3 12hr old    420 larva L3 puffstage 1-2    472 larva L3 puffstage 3-6    764 larva L3 puffstage 7-9    757 white prepupae new    682 white prepupae 12hr    989 white prepupae 24hr    1017 pupae 2d postWPP    559 pupae 3d postWPP    276 pupae 4d postWPP    271 adult male 01day    324 adult male 05day    422 adult male 30day    419 adult female 01day    1705 adult female 05day    3581 adult female 30day    3465 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    6471 embryo 02-04hr    2739 embryo 04-06hr    572 embryo 06-08hr    274 embryo 08-10hr    241 embryo 10-12hr    134 embryo 12-14hr    247 embryo 14-16hr    338 embryo 16-18hr    237 embryo 18-20hr    165 embryo 20-22hr    297 embryo 22-24hr    254 larva L1    308 larva L2    387 larva L3 12hr old    420 larva L3 puffstage 1-2    472 larva L3 puffstage 3-6    764 larva L3 puffstage 7-9    757 white prepupae new    682 white prepupae 12hr    989 white prepupae 24hr    1017 pupae 2d postWPP    559 pupae 3d postWPP    276 pupae 4d postWPP    271 adult male 01day    324 adult male 05day    422 adult male 30day    419 adult female 01day    1705 adult female 05day    3581 adult female 30day    3465 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0250850    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0250850 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval trachea. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0250850 expression level Tissue   Expression Level Larval Central Nervous System    333.275 Larval Midgut no informative data Larval Hindgut    54 Larval Malpighian Tubules    48.2 Larval Fat Body    42.1 Larval Salivary Gland    57.3 Larval Trachea    129.15 Larval Carcass    63.425 Adult Head    34.6 Adult Eye    39.1 Adult Brain    57 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    49.7 Adult Midgut    56.8 Adult Hindgut    52.9 Adult Malpighian Tubules    35 Adult Fat Body    50.7 Adult Salivary Gland no informative data Adult Heart    45.725 Adult VirginFemale Spermatheca    56.1 Adult InseminatedFemale Spermatheca    57.1 Adult Ovary    508.2 Adult Testis    50.6 Adult Male Accessory Gland    75.7 Adult Carcass    50.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    333.275 Larval Midgut no informative data Larval Hindgut    54 Larval Malpighian Tubules    48.2 Larval Fat Body    42.1 Larval Salivary Gland    57.3 Larval Trachea    129.15 Larval Carcass    63.425 Adult Head    34.6 Adult Eye    39.1 Adult Brain    57 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    49.7 Adult Midgut    56.8 Adult Hindgut    52.9 Adult Malpighian Tubules    35 Adult Fat Body    50.7 Adult Salivary Gland no informative data Adult Heart    45.725 Adult VirginFemale Spermatheca    56.1 Adult InseminatedFemale Spermatheca    57.1 Adult Ovary  508.2 Adult Testis    50.6 Adult Male Accessory Gland    75.7 Adult Carcass    50.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    333.275 Larval Midgut no informative data Larval Hindgut    54 Larval Malpighian Tubules    48.2 Larval Fat Body    42.1 Larval Salivary Gland    57.3 Larval Trachea    129.15 Larval Carcass    63.425 Adult Head    34.6 Adult Eye    39.1 Adult Brain    57 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    49.7 Adult Midgut    56.8 Adult Hindgut    52.9 Adult Malpighian Tubules    35 Adult Fat Body    50.7 Adult Salivary Gland no informative data Adult Heart    45.725 Adult VirginFemale Spermatheca    56.1 Adult InseminatedFemale Spermatheca    57.1 Adult Ovary    508.2 Adult Testis    50.6 Adult Male Accessory Gland    75.7 Adult Carcass    50.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    333.275 Larval Midgut no informative data Larval Hindgut    54 Larval Malpighian Tubules    48.2 Larval Fat Body    42.1 Larval Salivary Gland    57.3 Larval Trachea    129.15 Larval Carcass    63.425 Adult Head    34.6 Adult Eye    39.1 Adult Brain    57 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    49.7 Adult Midgut    56.8 Adult Hindgut    52.9 Adult Malpighian Tubules    35 Adult Fat Body    50.7 Adult Salivary Gland no informative data Adult Heart    45.725 Adult VirginFemale Spermatheca    56.1 Adult InseminatedFemale Spermatheca    57.1 Adult Ovary    508.2 Adult Testis    50.6 Adult Male Accessory Gland    75.7 Adult Carcass    50.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0250850 expression level Tissue   Expression Level Larval Central Nervous System    333.275 Larval Midgut no informative data Larval Hindgut    54 Larval Malpighian Tubules    48.2 Larval Fat Body    42.1 Larval Salivary Gland    57.3 Larval Trachea    129.15 Larval Carcass    63.425 Adult Head    34.6 Adult Eye    39.1 Adult Brain    57 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    49.7 Adult Midgut    56.8 Adult Hindgut    52.9 Adult Malpighian Tubules    35 Adult Fat Body    50.7 Adult Salivary Gland no informative data Adult Heart    45.725 Adult VirginFemale Spermatheca    56.1 Adult InseminatedFemale Spermatheca    57.1 Adult Ovary    508.2 Adult Testis    50.6 Adult Male Accessory Gland    75.7 Adult Carcass    50.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    333.275 Larval Midgut no informative data Larval Hindgut    54 Larval Malpighian Tubules    48.2 Larval Fat Body    42.1 Larval Salivary Gland    57.3 Larval Trachea    129.15 Larval Carcass    63.425 Adult Head    34.6 Adult Eye    39.1 Adult Brain    57 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    49.7 Adult Midgut    56.8 Adult Hindgut    52.9 Adult Malpighian Tubules    35 Adult Fat Body    50.7 Adult Salivary Gland no informative data Adult Heart    45.725 Adult VirginFemale Spermatheca    56.1 Adult InseminatedFemale Spermatheca    57.1 Adult Ovary  508.2 Adult Testis    50.6 Adult Male Accessory Gland    75.7 Adult Carcass    50.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    333.275 Larval Midgut no informative data Larval Hindgut    54 Larval Malpighian Tubules    48.2 Larval Fat Body    42.1 Larval Salivary Gland    57.3 Larval Trachea    129.15 Larval Carcass    63.425 Adult Head    34.6 Adult Eye    39.1 Adult Brain    57 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    49.7 Adult Midgut    56.8 Adult Hindgut    52.9 Adult Malpighian Tubules    35 Adult Fat Body    50.7 Adult Salivary Gland no informative data Adult Heart    45.725 Adult VirginFemale Spermatheca    56.1 Adult InseminatedFemale Spermatheca    57.1 Adult Ovary    508.2 Adult Testis    50.6 Adult Male Accessory Gland    75.7 Adult Carcass    50.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    333.275 Larval Midgut no informative data Larval Hindgut    54 Larval Malpighian Tubules    48.2 Larval Fat Body    42.1 Larval Salivary Gland    57.3 Larval Trachea    129.15 Larval Carcass    63.425 Adult Head    34.6 Adult Eye    39.1 Adult Brain    57 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    49.7 Adult Midgut    56.8 Adult Hindgut    52.9 Adult Malpighian Tubules    35 Adult Fat Body    50.7 Adult Salivary Gland no informative data Adult Heart    45.725 Adult VirginFemale Spermatheca    56.1 Adult InseminatedFemale Spermatheca    57.1 Adult Ovary    508.2 Adult Testis    50.6 Adult Male Accessory Gland    75.7 Adult Carcass    50.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut no informative data Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland no informative data Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    34.6   NA  Eye    39.1   NA  Brain    57   333.275  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    48   NA  Crop    49.7   no informative data  Midgut    56.8   54  Hindgut    52.9   48.2  Malpighian Tubules    35   42.1  Fat Body    50.7   57.3  Salivary Gland    no informative data   NA  Heart    45.725   129.15  Trachea    NA   NA  VirginFemale Spermatheca    56.1   NA  InseminatedFemale Spermatheca    57.1   NA  Ovary    508.2   NA  Testis    50.6   NA  Male Accessory Gland    75.7   63.425  Carcass    50.9 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_02
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0250850 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3014-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal rig05056 lethal | prepupal stage (with rigk07839) rigk07917 lethal | prepupal stage (with rigk07917) rigk07839 lethal | pupal stage (with Df(2R)exu1) rigk07839 rigk07917 lethal | recessive rig05056 rigk07839 rigk07917 semi-lethal | larval stage (with Df(2R)exu1) rigk07839 rigk07917 semi-lethal | larval stage (with rigk07839) rigk07917 semi-lethal | larval stage (with rigk07917) rigk07839 semi-lethal | prepupal stage (with Df(2R)exu1) rigk07917 viable, with Scer\GAL4pnr-MD237 rigGD10007 Phenotype manifest in Allele mouth hooks | third instar larval stage (with Df(2R)exu1) rigk07839
Classical Alleles ( 7 )
For All Classical Alleles Show
Allele of rig Class Mutagen Stocks Known lesion rigk07917 loss of function allele P-element activity 2 -- rig05056 P-element activity 1 -- rigc05761 piggyBac transposase 1 -- rigC063 1 -- rigCB-0767-3 1 -- rigk07839 loss of function allele P-element activity 1 -- rigc05808 piggyBac transposase 0 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of rig Class Mutagen Stocks Known lesion rigGD10007 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes rigHMS01162 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes rigKK105403 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel6070 (Ryder, 2004.4.26) Df(2R)Exel7164 (Ryder, 2004.4.26) Df(2R)exu1 (Spradling et al., 1999)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10007} NA P{KK105403} NA P{TRiP.HMS01162} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{lacW}l(2)SH1914SH1914 No P{lacW}rigk07839 No P{lacW}rigk07917 No P{PZ}rig05056 No miscellaneous insertions P{RS3}rigCB-0767-3 NA PBac{3HPy+}rigC063 NA PBac{PB}rigc05761 NA PBac{PB}rigc05808 NA
Gene Ontology: Function, Process & Cellular Component ( 7 unique terms )
Terms Based on Experimental Evidence ( 6 terms )
Molecular Function
CV term Evidence References
protein binding inferred from physical interaction with EcR AND inferred from physical interaction with Hr46 AND inferred from physical interaction with svp AND inferred from physical interaction with usp (assigned by UniProtKB) (Gates et al., 2004)
Biological Process
CV term Evidence References
molting cycle, chitin-based cuticle inferred from mutant phenotype (assigned by UniProtKB) (Gates et al., 2004) response to ecdysone inferred from mutant phenotype (assigned by UniProtKB) (Gates et al., 2004)
Cellular Component
CV term Evidence References
cytoplasm inferred from direct assay (assigned by UniProtKB) (Gates et al., 2004) cytoplasmic U snRNP body inferred from direct assay (Cauchi et al., 2010) nucleus inferred from direct assay (assigned by UniProtKB) (Gates et al., 2004)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
ligand-dependent nuclear receptor transcription coactivator activity non-traceable author statement (Gates, 2003.4.11)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions rig allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 62984 DroID - A comprehensive database of gene and protein interactions. • FBgn0250850 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37335
Orthologs
Genome-wide drosophilid orthologs	Dana\GF12753 Dere\GG20843 Dgri\GH19896 Dmoj\GI19852 Dper\GL17435 Dpse\GA24824 Dsec\GM19772 Dsim\GD25262 Dvir\GJ18840 Dwil\GK21827 Dyak\GE13783
Curated drosophilid orthologs	Dpse\GA15678
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL004286-PA Aedes aegypti (mosquito) AGAP010152-PA Anopheles gambiae (mosquito) XP_001120093.1 Apis mellifera (honey bee) ENSBTAP00000016037 Bos taurus (bovine) ENSCAFP00000025976 Canis familiaris (dog) CPIJ000857 Culex pipens (mosquito) ENSCPOP00000003133 Cavia porcellus (guinea pig) 108782 Capitella spl (polychaete worm) DDB0302538 Dictyostelium discoideum (amoeba) ENSECAP00000018265 Equus caballus (horse) ENSGACP00000027532 Gymnopilus aculeatus (mushroom) ENSGALP00000006262 Gallus gallus (chicken) ENSP00000285873 Homo sapiens (human) 234283 Lottia gigantea (owl limpet) ENSMODP00000010693 Monodelphis domestica (gray opossum) ENSMMUP00000027951 Macaca mulatta (rhesus monkey) ENSMUSP00000036603 Mus musculus (house mouse) XP_001606450.1 Nasonia vitripennis (wasp) ENSOANP00000008085 Ornithorynchus anatinus (platypus) PHUM010432-PA Pediculus humanus (human body louse) ENSPPYP00000017880 Pongo pygmaeus (orangutan) ENSPTRP00000029811 Pan troglodytes (chimpanzee) ENSRNOP00000050493 Rattus norvegicus (norway rat) XP_001815774.1 Tribolium castaneum (red flour beetle) ENSTNIP00000010440 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000000751 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000042042 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB18843 NV15702 LH23356 ISCW005411 FBgn0231435 FBgn0223812 FBgn0205986 FBgn0196574 FBgn0174671 JGI_V11_318153 JGI_V11_304061 JGI_V11_303985 JGI_V11_114452 FBgn0246209 FBgn0155038 FBgn0142589 FBgn0127360 FBgn0113029 FBgn0089787 CPIJ000857 BGIBMGA001282 BGIBMGA001281 ACYPI43759 GB10969 AGAP010152 AAEL004286 PHUM505160 GLEAN_08111
Stocks & Reagents
Stocks Listed in FlyBase ( 10 )
Bloomington	11391 cn1 P{PZ}rig05056/CyO; ry506 10691 y1 w67c23; P{lacW}rigk07917/CyO 34684 y1 sc* v1; P{TRiP.HMS01162}attP2 16271 y1 w1118; PBac{3HPy+}rigC063/CyO
Harvard	- PBac{PB}rigc05761
Kyoto	123321 w1118; P{RS3}rigCB-0767-3 102598 y1 w67c23 ; P{lacW}rigk07839 / CyO 111229 yd2 w1118 P{ey-FLP.N}2 P{GMR-lacZ.C(38.1)}TPN1; P{neoFRT}42D P{lacW}rigk07917 /CyO y+
VDRC	v107777 P{KK105403}VIE-260B v21109 w1118; P{GD10007}v21109
Genomic Clones ( 2 )
	BACR08P05 BACR33D17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 31 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	SD03652
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LD12835 LD21295 LD21689 LD22659 LD23281 LD24469 LD31294 LD32128 LD34765 LD35246 LD42247 LD42460 LD45585 LD47908 LP06160 RE55081 RE63828 SD01922 SD03640
Other clones	38384 121177 214277.66 282346 Dmel_dig_011492_0686_2697 Dmel_neb_007749_0936_2117 Dmel_neb_011551_0575_2200 Dmel_neb_015574_0917_2011 EK241244 EK307717 Nfly-132
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0250850 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37335
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: rig CG30149 (FlyBase, 1996-)
Source for database merge of	Source for merge of: CG11171 CG13440 (FlyBase, 1996-, BDGP Project Members, 2000-) Source for merge of: rig anon-SAGE:Wang-132 (FlyBase, 1996-)
Additional comments	Annotations CG11171, CG13440 merged as CG30149 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003) Source for identity of rig CG30149 was sequence comparison (date:030514). (FlyBase, 1996-) Source for merge of CG11171 CG13440 was a shared cDNA (date:010720). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_137655 RefSeq (Proteins) • NP_611499 DDBJ / EMBL / GenBank • AA820642 AAF57440 AAO39440 AAP31582 AI532233 AQ034008 AW944321 AY274835 BT003437 CB305317 CZ470236 CZ470269 Entrez Gene - A searchable database of RefSeq genes. • 37335 UniProtKB/Swiss-Prot • Q86BY9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • WD40/YVTN repeat-like-containing domain (IPR015943) WD40 repeat (IPR001680) WD40 repeat-like-containing domain (IPR011046) WD40 repeat, conserved site (IPR019775) WD40 repeat, subgroup (IPR019781)
Linkouts
	BioGRID - A database of protein and genetic interactions • 62984 DroID - A comprehensive database of gene and protein interactions. • FBgn0250850 DRSC - Results from RNAi screens. • FBgn0250850 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0250850 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3014-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0250850 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37335 InParanoid A subset of ortholog calls from InParanoid. • AAEL004286-PA Aedes aegypti (mosquito) AGAP010152-PA Anopheles gambiae (mosquito) XP_001120093.1 Apis mellifera (honey bee) ENSBTAP00000016037 Bos taurus (bovine) ENSCAFP00000025976 Canis familiaris (dog) CPIJ000857 Culex pipens (mosquito) ENSCPOP00000003133 Cavia porcellus (guinea pig) 108782 Capitella spl (polychaete worm) DDB0302538 Dictyostelium discoideum (amoeba) ENSECAP00000018265 Equus caballus (horse) ENSGACP00000027532 Gymnopilus aculeatus (mushroom) ENSGALP00000006262 Gallus gallus (chicken) ENSP00000285873 Homo sapiens (human) 234283 Lottia gigantea (owl limpet) ENSMODP00000010693 Monodelphis domestica (gray opossum) ENSMMUP00000027951 Macaca mulatta (rhesus monkey) ENSMUSP00000036603 Mus musculus (house mouse) XP_001606450.1 Nasonia vitripennis (wasp) ENSOANP00000008085 Ornithorynchus anatinus (platypus) PHUM010432-PA Pediculus humanus (human body louse) ENSPPYP00000017880 Pongo pygmaeus (orangutan) ENSPTRP00000029811 Pan troglodytes (chimpanzee) ENSRNOP00000050493 Rattus norvegicus (norway rat) XP_001815774.1 Tribolium castaneum (red flour beetle) ENSTNIP00000010440 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000000751 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000042042 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37335 modMine - Data generated by the modENCODE project. • FBgn0250850 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB18843 NV15702 LH23356 ISCW005411 FBgn0231435 FBgn0223812 FBgn0205986 FBgn0196574 FBgn0174671 JGI_V11_318153 JGI_V11_304061 JGI_V11_303985 JGI_V11_114452 FBgn0246209 FBgn0155038 FBgn0142589 FBgn0127360 FBgn0113029 FBgn0089787 CPIJ000857 BGIBMGA001282 BGIBMGA001281 ACYPI43759 GB10969 AGAP010152 AAEL004286 PHUM505160 GLEAN_08111
Synonyms & Secondary IDs ( 10 )
Reported As
Symbol Synonym	anon-SAGE:Wang-132   CG11171   CG13440 (Haussmann et al., 2008) CG30149 (Duncan et al., 2006, Keleman et al., 2009.8.5, Gates et al., 2004, Ni et al., 2010.12.1) l(2)05056 (BDGP Project Members, 1994-1999, Spradling et al., 1999, ) rig   Rig (Cauchi et al., 2010)
Name Synonym	anon-SAGE:Wang-132   Gemin5 (Cauchi et al., 2010) rigor mortis   Rigor mortis (Kroiss et al., 2008, Cauchi et al., 2010)
Secondary FlyBase IDs
	FBgn0010589 FBgn0034531 FBgn0034533 FBgn0050149 FBgn0066866
References ( 27 )
Generate a list of	All references relating to this gene ( 27 )
List References by type	Research paper  ( 7 ) Supplementary material  ( 3 ) Personal communication to FlyBase  ( 7 ) FlyBase analysis  ( 4 ) Computer file  ( 4 ) DNA/RNA sequence record  ( 1 ) Automatic genome annotation  ( 1 )
Recent research papers ( 1 )
	Cauchi et al., 2010, Exp. Cell Res. 316(14): 2354--2364 Drosophila SMN complex proteins Gemin2, Gemin3, and Gemin5 are components of U bodies. [FBrf0211219] Show all research papers ...