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Gene Dmel\Cht3

General Information
Symbol	Dmel\Cht3	Species	D. melanogaster
Name	Chitinase 3	Annotation symbol	CG18140
Feature type	protein_coding_gene	FlyBase ID	FBgn0250907
Gene Model Status	Current	Stock availability	None publicly available
Also Known As	CG17682, Cht1, DmCHT10
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map		Sequence location	2L:22,892,306..22,918,647 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Chitinase 3 is referred to in FlyBase by the symbol Dmel\Cht3 (CG18140, FBgn0250907). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: chitinase activity. Based on sequence similarity, it is predicted to be involved in the biological process: cuticle chitin catabolic process. No alleles are reported. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Chitin binding domain; Chitinase II; Glycoside hydrolase, catalytic domain; Glycoside hydrolase, chitinase active site; Glycoside hydrolase, family 18, catalytic domain; Glycoside hydrolase, superfamily. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed during late larval stages, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval trachea, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval hindgut. Comments on Affy2 ProbeSet: ProbeSet 1626417_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Cht3. Gene sequence location is 2L:22892306..22918647.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location
Experimentally Determined Cytological Location
Cytogenetic map Notes References 40A-40B   h35   (Drosophila Heterochromatin Genome Project, 2004)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Cht3 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.44 Gene model reviewed during 5.47 Annotated transcripts do not represent all supported alternative splices within 5' UTR. Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Cht3-RA FBtr0111127  NM_001042957   7096   2286 Cht3-RB FBtr0331165  NM_001273768   7180   2286 Cht3-RC FBtr0331166  NM_001273769   7167   2286
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Cht3-PA   FBpp0110419   258.8   2286   6.69     NP_001036422   EAA46011 Cht3-PB   FBpp0303592   258.8   2286   6.69     NP_001260697   AGB93232 Cht3-PC   FBpp0303593   258.8   2286   6.69     NP_001260698   AGB93233
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Glycoside hydrolase, family 18, catalytic domain (IPR001223) Glycoside hydrolase, chitinase active site (IPR001579) Chitin binding domain (IPR002557) Chitinase II (IPR011583) Glycoside hydrolase, catalytic domain (IPR013781) Glycoside hydrolase, superfamily (IPR017853)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AABU01002768 EAA46011   AF026500 AAB81858   AF026502 AAB81860   AE014134 AGB93232   AE014134 AGB93233   AI257396   AI258276   AI260735   AI294399   AI296730   AW944053   AY081055   AY119021 AAM50881   BG639261   BT021372 AAX33520   CK660715   CO180829   CO189412   CO264926   CO265829   CO266282   CO266623   CO268040   CO273855   CO274736   CO287389   CO297468   CO298220   CO309233   CO322388   CO332024   CO338922   CO339431   CO343703   CO344543   AE014134 EAA46011   EC061407   EC071054   EC073066   EC085992   EC087374   EC089823   EC205234   EC210449   EC220889   EC221726   EC229775   EC244375   EC253526   EC253781   EC254999   EC258580   EC258852
UniProtKB/Swiss-Prot	Q9W5U2
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 11 -- 12   dorsal trunk primordium   (Fisher et al., 2012) Comment:reported as dorsal trunk specific anlage posterior spiracle primordium   (Fisher et al., 2012) Comment:reported as posterior spiracle specific anlage primary segmental branch primordium   (Fisher et al., 2012) Comment:reported as primary segmental branch specific anlage tracheal primordium   (Fisher et al., 2012) visceral branch primordium   (Fisher et al., 2012) Comment:reported as visceral branch specific anlage embryonic stage 13 -- 16   adult hindgut precursor   (Fisher et al., 2012) atrium   (Fisher et al., 2012) embryonic dorsal epidermis   (Fisher et al., 2012) embryonic epipharynx   (Fisher et al., 2012) embryonic foregut   (Fisher et al., 2012) embryonic head epidermis   (Fisher et al., 2012) embryonic hypopharynx   (Fisher et al., 2012) embryonic salivary gland duct   (Fisher et al., 2012) embryonic ventral epidermis   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval trachea, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval hindgut. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    21.1 Larval Midgut    33.7 Larval Hindgut    112.9 Larval Malpighian Tubules    17.7 Larval Fat Body    6.8 Larval Salivary Gland    29.2 Larval Trachea    2598.9 Larval Carcass    1712.4 Adult Head    2 Adult Eye    24.75 Adult Brain    2.6 Adult Thoracic-Abdominal Ganglion    7.9 Adult Crop    4.3 Adult Midgut    2.1 Adult Hindgut    10.8 Adult Malpighian Tubules    3.9 Adult Fat Body    2.6 Adult Salivary Gland    3.9 Adult Heart    4.075 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    5.1 Adult Ovary    5.3 Adult Testis    19.1 Adult Male Accessory Gland    7.8 Adult Carcass    5.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    21.1 Larval Midgut    33.7 Larval Hindgut    112.9 Larval Malpighian Tubules    17.7 Larval Fat Body    6.8 Larval Salivary Gland    29.2 Larval Trachea  (2598.9) Larval Carcass  (1712.4) Adult Head    2 Adult Eye    24.75 Adult Brain    2.6 Adult Thoracic-Abdominal Ganglion    7.9 Adult Crop    4.3 Adult Midgut    2.1 Adult Hindgut    10.8 Adult Malpighian Tubules    3.9 Adult Fat Body    2.6 Adult Salivary Gland    3.9 Adult Heart    4.075 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    5.1 Adult Ovary    5.3 Adult Testis    19.1 Adult Male Accessory Gland    7.8 Adult Carcass    5.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    21.1 Larval Midgut    33.7 Larval Hindgut    112.9 Larval Malpighian Tubules    17.7 Larval Fat Body    6.8 Larval Salivary Gland    29.2 Larval Trachea  (2598.9) Larval Carcass  (1712.4) Adult Head    2 Adult Eye    24.75 Adult Brain    2.6 Adult Thoracic-Abdominal Ganglion    7.9 Adult Crop    4.3 Adult Midgut    2.1 Adult Hindgut    10.8 Adult Malpighian Tubules    3.9 Adult Fat Body    2.6 Adult Salivary Gland    3.9 Adult Heart    4.075 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    5.1 Adult Ovary    5.3 Adult Testis    19.1 Adult Male Accessory Gland    7.8 Adult Carcass    5.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    21.1 Larval Midgut    33.7 Larval Hindgut    112.9 Larval Malpighian Tubules    17.7 Larval Fat Body    6.8 Larval Salivary Gland    29.2 Larval Trachea    2598.9 Larval Carcass    1712.4 Adult Head    2 Adult Eye    24.75 Adult Brain    2.6 Adult Thoracic-Abdominal Ganglion    7.9 Adult Crop    4.3 Adult Midgut    2.1 Adult Hindgut    10.8 Adult Malpighian Tubules    3.9 Adult Fat Body    2.6 Adult Salivary Gland    3.9 Adult Heart    4.075 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    5.1 Adult Ovary    5.3 Adult Testis    19.1 Adult Male Accessory Gland    7.8 Adult Carcass    5.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    21.1 Larval Midgut    33.7 Larval Hindgut    112.9 Larval Malpighian Tubules    17.7 Larval Fat Body    6.8 Larval Salivary Gland    29.2 Larval Trachea    2598.9 Larval Carcass    1712.4 Adult Head    2 Adult Eye    24.75 Adult Brain    2.6 Adult Thoracic-Abdominal Ganglion    7.9 Adult Crop    4.3 Adult Midgut    2.1 Adult Hindgut    10.8 Adult Malpighian Tubules    3.9 Adult Fat Body    2.6 Adult Salivary Gland    3.9 Adult Heart    4.075 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    5.1 Adult Ovary    5.3 Adult Testis    19.1 Adult Male Accessory Gland    7.8 Adult Carcass    5.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    21.1 Larval Midgut    33.7 Larval Hindgut    112.9 Larval Malpighian Tubules    17.7 Larval Fat Body    6.8 Larval Salivary Gland    29.2 Larval Trachea  (2598.9) Larval Carcass  (1712.4) Adult Head    2 Adult Eye    24.75 Adult Brain    2.6 Adult Thoracic-Abdominal Ganglion    7.9 Adult Crop    4.3 Adult Midgut    2.1 Adult Hindgut    10.8 Adult Malpighian Tubules    3.9 Adult Fat Body    2.6 Adult Salivary Gland    3.9 Adult Heart    4.075 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    5.1 Adult Ovary    5.3 Adult Testis    19.1 Adult Male Accessory Gland    7.8 Adult Carcass    5.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    21.1 Larval Midgut    33.7 Larval Hindgut    112.9 Larval Malpighian Tubules    17.7 Larval Fat Body    6.8 Larval Salivary Gland    29.2 Larval Trachea  (2598.9) Larval Carcass  1712.4 Adult Head    2 Adult Eye    24.75 Adult Brain    2.6 Adult Thoracic-Abdominal Ganglion    7.9 Adult Crop    4.3 Adult Midgut    2.1 Adult Hindgut    10.8 Adult Malpighian Tubules    3.9 Adult Fat Body    2.6 Adult Salivary Gland    3.9 Adult Heart    4.075 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    5.1 Adult Ovary    5.3 Adult Testis    19.1 Adult Male Accessory Gland    7.8 Adult Carcass    5.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    21.1 Larval Midgut    33.7 Larval Hindgut    112.9 Larval Malpighian Tubules    17.7 Larval Fat Body    6.8 Larval Salivary Gland    29.2 Larval Trachea    2598.9 Larval Carcass    1712.4 Adult Head    2 Adult Eye    24.75 Adult Brain    2.6 Adult Thoracic-Abdominal Ganglion    7.9 Adult Crop    4.3 Adult Midgut    2.1 Adult Hindgut    10.8 Adult Malpighian Tubules    3.9 Adult Fat Body    2.6 Adult Salivary Gland    3.9 Adult Heart    4.075 Adult VirginFemale Spermatheca    4.6 Adult InseminatedFemale Spermatheca    5.1 Adult Ovary    5.3 Adult Testis    19.1 Adult Male Accessory Gland    7.8 Adult Carcass    5.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    2   NA  Eye    24.75   NA  Brain    2.6   21.1  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    7.9   NA  Crop    4.3   33.7  Midgut    2.1   112.9  Hindgut    10.8   17.7  Malpighian Tubules    3.9   6.8  Fat Body    2.6   29.2  Salivary Gland    3.9   NA  Heart    4.075   2598.9  Trachea    NA   NA  VirginFemale Spermatheca    4.6   NA  InseminatedFemale Spermatheca    5.1   NA  Ovary    5.3   NA  Testis    19.1   NA  Male Accessory Gland    7.8   1712.4  Carcass    5.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    83 central nervous system, larvae L3    22 central nervous system, pupae P8    17 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering    2 fat body, white prepupae    20 fat body, pupae P8    21 carcass, larvae L3 wandering    209 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    17 ovary, mated 4-day female    14 testis, mated 4-day male    1 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (83) central nervous system, larvae L3    22 central nervous system, pupae P8    17 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering    2 fat body, white prepupae    20 fat body, pupae P8    21 carcass, larvae L3 wandering  (209) carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    17 ovary, mated 4-day female    14 testis, mated 4-day male    1 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    83 central nervous system, larvae L3    22 central nervous system, pupae P8    17 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering    2 fat body, white prepupae    20 fat body, pupae P8    21 carcass, larvae L3 wandering  (209) carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    17 ovary, mated 4-day female    14 testis, mated 4-day male    1 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    83 central nervous system, larvae L3    22 central nervous system, pupae P8    17 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering    2 fat body, white prepupae    20 fat body, pupae P8    21 carcass, larvae L3 wandering    209 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    17 ovary, mated 4-day female    14 testis, mated 4-day male    1 accessory gland, mated 4-day male    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    83 central nervous system, larvae L3    22 central nervous system, pupae P8    17 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering    2 fat body, white prepupae    20 fat body, pupae P8    21 carcass, larvae L3 wandering    209 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    17 ovary, mated 4-day female    14 testis, mated 4-day male    1 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (83) central nervous system, larvae L3    22 central nervous system, pupae P8    17 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering    2 fat body, white prepupae    20 fat body, pupae P8    21 carcass, larvae L3 wandering  (209) carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    17 ovary, mated 4-day female    14 testis, mated 4-day male    1 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    83 central nervous system, larvae L3    22 central nervous system, pupae P8    17 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering    2 fat body, white prepupae    20 fat body, pupae P8    21 carcass, larvae L3 wandering  (209) carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    17 ovary, mated 4-day female    14 testis, mated 4-day male    1 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    83 central nervous system, larvae L3    22 central nervous system, pupae P8    17 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering    2 fat body, white prepupae    20 fat body, pupae P8    21 carcass, larvae L3 wandering    209 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    17 ovary, mated 4-day female    14 testis, mated 4-day male    1 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed during late larval stages, at stages throughout the pupal period. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    3 embryo 08-10hr    6 embryo 10-12hr    28 embryo 12-14hr    61 embryo 14-16hr    34 embryo 16-18hr    14 embryo 18-20hr    5 embryo 20-22hr    11 embryo 22-24hr    14 larva L1    22 larva L2    64 larva L3 12hr old    25 larva L3 puffstage 1-2    43 larva L3 puffstage 3-6    108 larva L3 puffstage 7-9    160 white prepupae new    141 white prepupae 12hr    59 white prepupae 24hr    184 pupae 2d postWPP    142 pupae 3d postWPP    21 pupae 4d postWPP    3 adult male 01day    1 adult male 05day    1 adult male 30day    1 adult female 01day    0 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    3 embryo 08-10hr    6 embryo 10-12hr  (28) embryo 12-14hr  (61) embryo 14-16hr  (34) embryo 16-18hr    14 embryo 18-20hr    5 embryo 20-22hr    11 embryo 22-24hr    14 larva L1    22 larva L2  (64) larva L3 12hr old    25 larva L3 puffstage 1-2  (43) larva L3 puffstage 3-6  (108) larva L3 puffstage 7-9  (160) white prepupae new  (141) white prepupae 12hr  (59) white prepupae 24hr  (184) pupae 2d postWPP  (142) pupae 3d postWPP    21 pupae 4d postWPP    3 adult male 01day    1 adult male 05day    1 adult male 30day    1 adult female 01day    0 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    3 embryo 08-10hr    6 embryo 10-12hr    28 embryo 12-14hr    61 embryo 14-16hr    34 embryo 16-18hr    14 embryo 18-20hr    5 embryo 20-22hr    11 embryo 22-24hr    14 larva L1    22 larva L2    64 larva L3 12hr old    25 larva L3 puffstage 1-2    43 larva L3 puffstage 3-6  (108) larva L3 puffstage 7-9  (160) white prepupae new  (141) white prepupae 12hr    59 white prepupae 24hr  (184) pupae 2d postWPP  (142) pupae 3d postWPP    21 pupae 4d postWPP    3 adult male 01day    1 adult male 05day    1 adult male 30day    1 adult female 01day    0 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    3 embryo 08-10hr    6 embryo 10-12hr    28 embryo 12-14hr    61 embryo 14-16hr    34 embryo 16-18hr    14 embryo 18-20hr    5 embryo 20-22hr    11 embryo 22-24hr    14 larva L1    22 larva L2    64 larva L3 12hr old    25 larva L3 puffstage 1-2    43 larva L3 puffstage 3-6    108 larva L3 puffstage 7-9    160 white prepupae new    141 white prepupae 12hr    59 white prepupae 24hr    184 pupae 2d postWPP    142 pupae 3d postWPP    21 pupae 4d postWPP    3 adult male 01day    1 adult male 05day    1 adult male 30day    1 adult female 01day    0 adult female 05day    1 adult female 30day    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    3 embryo 08-10hr    6 embryo 10-12hr    28 embryo 12-14hr    61 embryo 14-16hr    34 embryo 16-18hr    14 embryo 18-20hr    5 embryo 20-22hr    11 embryo 22-24hr    14 larva L1    22 larva L2    64 larva L3 12hr old    25 larva L3 puffstage 1-2    43 larva L3 puffstage 3-6    108 larva L3 puffstage 7-9    160 white prepupae new    141 white prepupae 12hr    59 white prepupae 24hr    184 pupae 2d postWPP    142 pupae 3d postWPP    21 pupae 4d postWPP    3 adult male 01day    1 adult male 05day    1 adult male 30day    1 adult female 01day    0 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    3 embryo 08-10hr    6 embryo 10-12hr  28 embryo 12-14hr  (61) embryo 14-16hr  (34) embryo 16-18hr    14 embryo 18-20hr    5 embryo 20-22hr    11 embryo 22-24hr    14 larva L1    22 larva L2  (64) larva L3 12hr old    25 larva L3 puffstage 1-2  (43) larva L3 puffstage 3-6  (108) larva L3 puffstage 7-9  (160) white prepupae new  (141) white prepupae 12hr  (59) white prepupae 24hr  (184) pupae 2d postWPP  (142) pupae 3d postWPP    21 pupae 4d postWPP    3 adult male 01day    1 adult male 05day    1 adult male 30day    1 adult female 01day    0 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    3 embryo 08-10hr    6 embryo 10-12hr    28 embryo 12-14hr    61 embryo 14-16hr    34 embryo 16-18hr    14 embryo 18-20hr    5 embryo 20-22hr    11 embryo 22-24hr    14 larva L1    22 larva L2    64 larva L3 12hr old    25 larva L3 puffstage 1-2    43 larva L3 puffstage 3-6  108 larva L3 puffstage 7-9  (160) white prepupae new  141 white prepupae 12hr    59 white prepupae 24hr  (184) pupae 2d postWPP  142 pupae 3d postWPP    21 pupae 4d postWPP    3 adult male 01day    1 adult male 05day    1 adult male 30day    1 adult female 01day    0 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    3 embryo 08-10hr    6 embryo 10-12hr    28 embryo 12-14hr    61 embryo 14-16hr    34 embryo 16-18hr    14 embryo 18-20hr    5 embryo 20-22hr    11 embryo 22-24hr    14 larva L1    22 larva L2    64 larva L3 12hr old    25 larva L3 puffstage 1-2    43 larva L3 puffstage 3-6    108 larva L3 puffstage 7-9    160 white prepupae new    141 white prepupae 12hr    59 white prepupae 24hr    184 pupae 2d postWPP    142 pupae 3d postWPP    21 pupae 4d postWPP    3 adult male 01day    1 adult male 05day    1 adult male 30day    1 adult female 01day    0 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    6 Schneider line 2 Sg4    12 embryonic 1182-4H    1 embryonic GM2    11 embryonic Kc167    8 embryonic S1    2 embryonic S3    2 leg disc CME L1    8 wing disc CME-W2    15 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    2 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    2 ovary OSC    1 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    6 Schneider line 2 Sg4    12 embryonic 1182-4H    1 embryonic GM2    11 embryonic Kc167    8 embryonic S1    2 embryonic S3    2 leg disc CME L1    8 wing disc CME-W2    15 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    2 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    2 ovary OSC    1 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    6 Schneider line 2 Sg4    12 embryonic 1182-4H    1 embryonic GM2    11 embryonic Kc167    8 embryonic S1    2 embryonic S3    2 leg disc CME L1    8 wing disc CME-W2    15 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    2 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    2 ovary OSC    1 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    6 Schneider line 2 Sg4    12 embryonic 1182-4H    1 embryonic GM2    11 embryonic Kc167    8 embryonic S1    2 embryonic S3    2 leg disc CME L1    8 wing disc CME-W2    15 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    2 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    2 ovary OSC    1 ovary OSS    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    6 Schneider line 2 Sg4    12 embryonic 1182-4H    1 embryonic GM2    11 embryonic Kc167    8 embryonic S1    2 embryonic S3    2 leg disc CME L1    8 wing disc CME-W2    15 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    2 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    2 ovary OSC    1 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    6 Schneider line 2 Sg4    12 embryonic 1182-4H    1 embryonic GM2    11 embryonic Kc167    8 embryonic S1    2 embryonic S3    2 leg disc CME L1    8 wing disc CME-W2    15 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    2 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    2 ovary OSC    1 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    6 Schneider line 2 Sg4    12 embryonic 1182-4H    1 embryonic GM2    11 embryonic Kc167    8 embryonic S1    2 embryonic S3    2 leg disc CME L1    8 wing disc CME-W2    15 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    2 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    2 ovary OSC    1 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    6 Schneider line 2 Sg4    12 embryonic 1182-4H    1 embryonic GM2    11 embryonic Kc167    8 embryonic S1    2 embryonic S3    2 leg disc CME L1    8 wing disc CME-W2    15 wing disc ML-DmD8    12 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    2 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    2 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    2 ovary OSC    1 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    64 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    6 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    3 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3  (64) Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    6 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    3 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    64 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    6 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    3 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    64 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    6 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    3 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    64 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    6 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    3 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3  (64) Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    6 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    3 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    64 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    6 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    3 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    64 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    6 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    3 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_25
External Data & Images
Linkouts	BDGP expression data • LP04696 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0250907 FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Cht3 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Cht3 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Cht3 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Disrupted in	Df(2L)D1 (Chaouki and Salz, 2006)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
chitinase activity inferred from sequence or structural similarity with EMBL:AF026492 AND inferred from sequence or structural similarity with EMBL:U29615 (FlyBase, 1992-) inferred from sequence or structural similarity with EMBL:U29615 (FlyBase, 1992-) non-traceable author statement (Specht, 1997.9.24, Specht, 1997.9.24) chitin binding inferred from electronic annotation with InterPro:IPR002557 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
carbohydrate metabolic process inferred from electronic annotation with InterPro:IPR001223, InterPro:IPR001579, InterPro:IPR013781 (FlyBase Curators et al., 2004-) cuticle chitin catabolic process inferred from sequence or structural similarity with EMBL:U29615 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
extracellular region inferred from electronic annotation with InterPro:IPR002557 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Cht3 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 78241 DroID - A comprehensive database of gene and protein interactions. • FBgn0250907 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 3355116
Orthologs
OrthoDB Orthologs (85) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6FXRSS Dipteran inclusive ortholog search EOG67WNWJ Insect inclusive ortholog search EOG6V9SKF Arthropod inclusive ortholog search EOG61RN8S Metazoa inclusive ortholog search EOG65J4QR
Orthologs in Drosophila Species (EOG6FXRSS)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Cht3     Drosophila simulans   Dsim\GD17714     Drosophila simulans   Dsim\GD17715     Drosophila sechellia   Dsec\GM26719     Drosophila sechellia   Dsec\GM14185     Drosophila erecta   Dere\GG21384     Drosophila yakuba   Dyak\GE17254     Drosophila ananassae   Dana\GF22750     Drosophila pseudoobscura pseudoobscura   Dpse\GA25359     Drosophila persimilis   Dper\GL20518     Drosophila willistoni   Dwil\GK14769     Drosophila virilis   Dvir\GJ13003     Drosophila mojavensis   Dmoj\GI11661     Drosophila grimshawi   Dgri\GH10759
Orthologs in non-Drosophila Dipterans (EOG67WNWJ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL012268   Anopheles gambiae Malaria mosquito  Agam\AGAP009022   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ010945
Orthologs in non-Dipteran Insects (EOG6V9SKF)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB43173   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG005118   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH18302   Atta cephalotes Leafcutter ant  Acep\ACEP23528   Camponotus floridanus Florida carpenter ant  Cflo\CFLO18449   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12975   Linepithema humile Argentine ant  Lhum\LH25346   Pogonomyrmex barbatus Red harvester ant  Pbar\PB16024   Solenopsis invicta Red fire ant  Sinv\SINV22838   Acyrthosiphon pisum Pea aphid  Apim\ACYPI010095   Bombyx mori Silkmoth  Bmor\BGIBMGA006874   Pediculus humanus Human body louse  Phum\PHUM257700   Tribolium castaneum Red flour beetle  Tcas\TC012734
Orthologs in non-Insect Arthropods (EOG61RN8S)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_235148   Daphnia pulex Water flea  Dpux\Gfm1
Orthologs in non-Arthropod Metazoa (EOG65J4QR)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\cht-1 Y Caenorhabditis elegans Nematode  Cele\R09D1.10 Y Caenorhabditis elegans Nematode  Cele\C08H9.14 Y Caenorhabditis elegans Nematode  Cele\R09D1.6 Y Caenorhabditis elegans Nematode  Cele\T19H5.6 Y Caenorhabditis elegans Nematode  Cele\Y22D7AL.14 Y Caenorhabditis elegans Nematode  Cele\R09D1.8 Y Caenorhabditis elegans Nematode  Cele\T10D4.3 Y Caenorhabditis elegans Nematode  Cele\T01C4.1 Y Caenorhabditis elegans Nematode  Cele\T19H5.1 Y Caenorhabditis elegans Nematode  Cele\M01B2.6 Y Caenorhabditis elegans Nematode  Cele\C08H9.13 Y Caenorhabditis elegans Nematode  Cele\C45E5.3 Y Caenorhabditis elegans Nematode  Cele\R09D1.5 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_020550gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_005754gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_009442gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_020549gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_018092gn Y Danio rerio Zebrafish  Drer\ENSDARG00000075745 Y Danio rerio Zebrafish  Drer\chia.6 Y Danio rerio Zebrafish  Drer\chia.4 Y Danio rerio Zebrafish  Drer\chia.3 Y Danio rerio Zebrafish  Drer\si:ch211-226m16.2 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000011839 Y Xenopus tropicalis Western clawed frog  Xtro\ctbs Y Xenopus tropicalis Western clawed frog  Xtro\chia Y Xenopus tropicalis Western clawed frog  Xtro\chit1 Y Gallus gallus Domestic chicken  Ggal\CTBS Y Gallus gallus Domestic chicken  Ggal\CHIA Y Gallus gallus Domestic chicken  Ggal\LOC768786 Y Gallus gallus Domestic chicken  Ggal\CHIA Y Mus musculus House mouse  Mmus\Chi3l1 Y Mus musculus House mouse  Mmus\Chi3l4 Y Mus musculus House mouse  Mmus\BC051070 Y Mus musculus House mouse  Mmus\ENSMUSG00000074340 Y Mus musculus House mouse  Mmus\Chit1 Y Mus musculus House mouse  Mmus\Ctbs Y Mus musculus House mouse  Mmus\Chi3l7 Y Rattus norvegicus Norway rat  Rnor\Chit1 Y Rattus norvegicus Norway rat  Rnor\Ctbs Y Rattus norvegicus Norway rat  Rnor\Chia Y Rattus norvegicus Norway rat  Rnor\Chi3l3 Y Rattus norvegicus Norway rat  Rnor\RGD1309110 Y Rattus norvegicus Norway rat  Rnor\Chi3l1 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000037116 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000032282 Y Homo sapiens Human  Hsap\CHIA Y Homo sapiens Human  Hsap\CHI3L2 Y Homo sapiens Human  Hsap\OVGP1 Y Homo sapiens Human  Hsap\CTBS Y Homo sapiens Human  Hsap\CHI3L1 Y Homo sapiens Human  Hsap\CHIT1 Y
Human Orthologs (6)
Gene OMIM HGNC Hsap\CHIA     Hsap\CHI3L2     Hsap\OVGP1     Hsap\CTBS     Hsap\CHI3L1     Hsap\CHIT1
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 2 )
	BACR07M22 BACR20K08 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 41 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LP04696 LP05745
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	11863 15719 32474 33239 36002 62475 83396 174027 214213.3 214251.5 214467.4 214479.3 214543.6 274737 CK01.54C.F3 CK01.118B.D5 EC12872 EK044222 EK065723 EK090015 EK112451 EK115305 EK140929 EK143829 EK145856 EK147053 EK172545 EK188031 EK217036 EK260803 EK302331 EP00319 EP01955 EP17847 EP19456 LP01426 LP07761 LP10774 LP19534
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0250907 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 3355116
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: Cht3 BcDNA:LP04696 (FlyBase, 1996-) Source for merge of: Cht3 Cht1 (FlyBase Genome Annotators, 2002-2003)
Additional comments	Annotations CG18140 and CG17682 merged in release 3.0 of the genome annotation. (FlyBase Genome Annotators, 2002-2003) Source for merge of Cht3 BcDNA:LP04696 was a shared cDNA (date:030728). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_001042957 NM_001273768 NM_001273769 RefSeq (Proteins) • NP_001036422 NP_001260697 NP_001260698 DDBJ / EMBL / GenBank • AAB81858 AAB81860 AABU01002768 AAM50881 AAX33520 AF026500 AF026502 AGB93232 AGB93233 AI257396 AI260735 AW944053 AY081055 AY119021 BT021372 EAA46011 Entrez Gene - A searchable database of RefSeq genes. • 3355116 UniProtKB/Swiss-Prot • Q9W5U2
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Glycoside hydrolase, family 18, catalytic domain (IPR001223) Glycoside hydrolase, chitinase active site (IPR001579) Chitin binding domain (IPR002557) Chitinase II (IPR011583) Glycoside hydrolase, catalytic domain (IPR013781) Glycoside hydrolase, superfamily (IPR017853) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LP04696
Linkouts
	BioGRID - A database of protein and genetic interactions • 78241 DroID - A comprehensive database of gene and protein interactions. • FBgn0250907 DRSC - Results from RNAi screens. • FBgn0250907 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0250907 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0250907 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 3355116 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 3355116 modMine - Data generated by the modENCODE project. • FBgn0250907
Synonyms & Secondary IDs ( 18 )
Reported As
Symbol Synonym	BcDNA:LP04696   CG17682 (FlyBase Genome Annotators, 2002-2003, Dimitri et al., 2003, Zhu et al., 2004, ) CG18140 (FlyBase Genome Annotators, 2002-2003, Dimitri et al., 2003, Zhu et al., 2004, Dimitri et al., 2005, Rossi et al., 2007) CG18140-PA3 (Zhu et al., 2004) Cht1 (Zhu et al., 2004, ) CHT1 (Specht, 1997.9.24) Cht3 (Zhu et al., 2004, Telonis-Scott et al., 2009, Lin et al., 2012) CHT3 (Specht, 1997.9.24) Cht10 (Zhu et al., 2004) DmCHT1 (de la Vega et al., 1998) DmCHT3 (de la Vega et al., 1998) DmCHT10 (Zhu et al., 2008, Zhu et al., 2008)
Name Synonym	Chitinase (Yasuhara and Wakimoto, 2008) chitinase-1 (Dimitri et al., 2003) Chitinase 1   chitinase-3 (Dimitri et al., 2003, Dimitri et al., 2005, Dimitri et al., 2003) Chitinase 3 (Chaouki and Salz, 2006) chitinase 3 (Paré et al., 2012)
Secondary FlyBase IDs
	FBan0018140 FBgn0022701 FBgn0022703 FBgn0063117
References ( 34 )
Generate a list of	All references relating to this gene ( 34 )
List References by type	Research paper  ( 17 ) Supplementary material  ( 2 ) Review  ( 2 ) Personal communication to FlyBase  ( 4 ) FlyBase analysis  ( 3 ) DNA/RNA sequence record  ( 2 ) Website  ( 1 ) Curated genome annotation  ( 3 )
Recent research papers ( 2 )
	Lin et al., 2012, PLoS ONE 7(6): e39758 HP1a Targets the Drosophila KDM4A Demethylase to a Subset of Heterochromatic Genes to Regulate H3K36me3 Levels. [FBrf0218736] Paré et al., 2012, PLoS ONE 7(5): e36254 The functions of grainy head-like proteins in animals and fungi and the evolution of apical extracellular barriers. [FBrf0218280] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...