FB2019_04, released Aug 22, 2019

Gene: Dmel\side-II

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General Information
Symbol
Dmel\side-II
Species
D. melanogaster
Name
sidestep II
Annotation Symbol
CG42313
Feature Type
protein_coding_gene
FlyBase ID
FBgn0259213
Gene Model Status
Current
Stock Availability
9 publicly available
Gene Snapshot
Insufficient genetic data for FlyBase to solicit a summary. [Date last reviewed: 2016-06-30]
Other Summaries
Also Known As
BG:DS01219 .3, BG:DS03144 .1
Key Links
Genomic Location
Cytogenetic map
35B7-35B7
Sequence location
2L:14,907,489..14,972,300 [-]
Recombination map
2-50
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
Molecular Function (GO)
[Detailed GO annotations]
Experimental Evidence
-
Predictions / Assertions
-
Summaries
Gene Group (FlyBase)
SIDE FAMILY -
SIDE is a closely related family encoding immunoglobulin superfamily proteins. They can interact with BEAT family members. Interactions between side and beat-Ia have been shown to play a role in the control of motor axon guidance. (Adapted from FBrf0207934 and FBrf0222007).
Gene Model and Products
Number of Transcripts
2
Number of Unique Polypeptides
1

Please see the GBrowse view of Dmel\side-II or the JBrowse view of Dmel\side-II for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model
Gene model reviewed during 5.52
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.56
Sequence Ontology: Class of Gene
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
side-II-RA
FBtr0299711
NM_001014485
5214
1064
side-II-RB
FBtr0345431
NM_001299017
5298
1064
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
side-II-PA
FBpp0288989
114.1
1064
7.35
NP_001014485
AAX52666
side-II-PB
FBpp0311556
114.1
1064
7.35
NP_001285946
AHN54460
Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

1064 aa isoforms: side-II-PA, side-II-PB
Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\side-II using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Gene Ontology (0 terms)
Molecular Function (0 terms)
There is no information supporting a Molecular Function term for this gene. (Based on a review of available data before: 2006-08-03 )
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Biological Process (0 terms)
There is no information supporting a Biological Process term for this gene. (Based on a review of available data before: 2006-08-03 )
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (0 terms)
There is no information supporting a Cellular Component term for this gene. (Based on a review of available data before: 2006-08-03 )
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage 15
embryonic/larval central nervous system
(Li et al., 2017)
embryonic/larval muscle system
(Li et al., 2017)
Additional Descriptive Data
side-II is expressed broadly in the central nervous system and in developing musculature at embryonic stage 15.
(Li et al., 2017)
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
adult stage
adult head
(Aradska et al., 2015)
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\side-II in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Flygut - An atlas of the Drosophila adult midgut
Images
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 4 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 9 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of side-II
Transgenic constructs containing regulatory region of side-II
Deletions and Duplications ( 2 )
Phenotypes
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v7.1)
Homo sapiens (Human) (7)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\MERTK
1 of 15
Yes
Yes
Hsap\PSG1
1 of 15
Yes
Yes
Hsap\SIGLEC6
1 of 15
Yes
Yes
Hsap\SIGLEC7
1 of 15
Yes
Yes
Hsap\SIGLEC8
1 of 15
Yes
Yes
Hsap\SIGLEC9
1 of 15
Yes
Yes
Hsap\SIGLEC12
1 of 15
Yes
Yes
Model Organism Orthologs (via DIOPT v7.1)
Mus musculus (laboratory mouse) (2)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Siglec1
1 of 15
Yes
Yes
Mmus\Siglece
1 of 15
Yes
Yes
Rattus norvegicus (Norway rat) (1)
Rnor\Siglec10
1 of 13
Yes
Yes
Xenopus tropicalis (Western clawed frog) (0)
No records found.
Danio rerio (Zebrafish) (2)
Drer\hmcn2
1 of 15
Yes
No
Drer\siglec15l
1 of 15
Yes
Yes
Caenorhabditis elegans (Nematode, roundworm) (0)
No records found.
Arabidopsis thaliana (thale-cress) (0)
No records found.
Saccharomyces cerevisiae (Brewer's yeast) (0)
No records found.
Schizosaccharomyces pombe (Fission yeast) (0)
No records found.
Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG091902M3 )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly
Dmel\side-II
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00000180
Drosophila simulans
Dsim\GD21980
Drosophila sechellia
Dsec\GM14610
Drosophila erecta
Dere\GG24233
Drosophila yakuba
Dyak\GE24765
Drosophila ananassae
Dana\GF15000
Drosophila pseudoobscura pseudoobscura
Dpse\GA25412
Drosophila persimilis
Dper\GL25736
Drosophila willistoni
Dwil\GK18073
Drosophila virilis
Dvir\GJ16040
Drosophila mojavensis
Dmoj\GI17336
Drosophila grimshawi
Dgri\GH10825
Drosophila grimshawi
Dgri\GH10826
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091504WD )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17023538
Glossina morsitans
Tsetse fly
Gmor\GMOY007559
Glossina morsitans
Tsetse fly
Gmor\GMOY004849
Mayetiola destructor
Hessian fly
Mdes\Mdes008871
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL010645
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL009064
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL009943
Anopheles darlingi
American malaria mosquito
Adar\ADAC007536
Anopheles darlingi
American malaria mosquito
Adar\ADAC010196
Anopheles gambiae
Malaria mosquito
Agam\AGAP008320
Anopheles gambiae
Malaria mosquito
Agam\AGAP009596
Anopheles gambiae
Malaria mosquito
Agam\AGAP009683
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ004619
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ005977
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ004618
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ012799
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ005517
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W02GJ )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA008686
Bombyx mori
Silkmoth
Bmor\BGIBMGA003795
Bombyx mori
Silkmoth
Bmor\BGIBMGA004752
Bombyx mori
Silkmoth
Bmor\BGIBMGA004778
Bombyx mori
Silkmoth
Bmor\BGIBMGA001111
Bombyx mori
Silkmoth
Bmor\BGIBMGA004730
Bombyx mori
Silkmoth
Bmor\BGIBMGA005033
Bombyx mori
Silkmoth
Bmor\BGIBMGA001045
Bombyx mori
Silkmoth
Bmor\BGIBMGA004767
Bombyx mori
Silkmoth
Bmor\BGIBMGA005029
Danaus plexippus
Monarch butterfly
Dple\DPOGS204150-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS211466-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS214757-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS214714-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS214704-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS216214-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS200711-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS204151-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS211044-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS206243-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS200752-PA
Heliconius melpomene
Postman butterfly
Hmel\HMEL014692
Heliconius melpomene
Postman butterfly
Hmel\HMEL013021
Heliconius melpomene
Postman butterfly
Hmel\HMEL011587
Heliconius melpomene
Postman butterfly
Hmel\HMEL009670
Heliconius melpomene
Postman butterfly
Hmel\HMEL004362
Heliconius melpomene
Postman butterfly
Hmel\HMEL015351
Heliconius melpomene
Postman butterfly
Hmel\HMEL013015
Heliconius melpomene
Postman butterfly
Hmel\HMEL009584
Heliconius melpomene
Postman butterfly
Hmel\HMEL007470
Heliconius melpomene
Postman butterfly
Hmel\HMEL011830
Apis florea
Little honeybee
Aflo\2147494657
Apis florea
Little honeybee
Aflo\3698367956
Apis florea
Little honeybee
Aflo\2147488083
Apis florea
Little honeybee
Aflo\3549480228
Apis florea
Little honeybee
Aflo\3203470116
Apis florea
Little honeybee
Aflo\2147488035
Apis florea
Little honeybee
Aflo\2534497476
Apis florea
Little honeybee
Aflo\4086318580
Apis florea
Little honeybee
Aflo\2389894564
Apis mellifera
Western honey bee
Amel\GB44412
Apis mellifera
Western honey bee
Amel\GB44551
Apis mellifera
Western honey bee
Amel\GB44567
Apis mellifera
Western honey bee
Amel\GB49947
Apis mellifera
Western honey bee
Amel\GB51391
Apis mellifera
Western honey bee
Amel\GB46759
Apis mellifera
Western honey bee
Amel\GB51385
Apis mellifera
Western honey bee
Amel\GB40916
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP18917
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP12395
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP18200
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP12393
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP18955
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP18832
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP16868
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP20647
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP16866
Bombus terrestris
Buff-tailed bumblebee
Bter\15216713
Bombus terrestris
Buff-tailed bumblebee
Bter\15216712
Bombus terrestris
Buff-tailed bumblebee
Bter\15216299
Bombus terrestris
Buff-tailed bumblebee
Bter\15216598
Bombus terrestris
Buff-tailed bumblebee
Bter\15216601
Bombus terrestris
Buff-tailed bumblebee
Bter\15216522
Bombus terrestris
Buff-tailed bumblebee
Bter\15210600
Bombus terrestris
Buff-tailed bumblebee
Bter\15205480
Bombus terrestris
Buff-tailed bumblebee
Bter\15202459
Linepithema humile
Argentine ant
Lhum\LH14073
Linepithema humile
Argentine ant
Lhum\LH12379
Linepithema humile
Argentine ant
Lhum\LH18578
Linepithema humile
Argentine ant
Lhum\LH12381
Linepithema humile
Argentine ant
Lhum\LH12378
Linepithema humile
Argentine ant
Lhum\LH23073
Linepithema humile
Argentine ant
Lhum\LH16329
Linepithema humile
Argentine ant
Lhum\LH14108
Linepithema humile
Argentine ant
Lhum\LH14075
Linepithema humile
Argentine ant
Lhum\LH12377
Linepithema humile
Argentine ant
Lhum\LH17656
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:00300d
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:00105d
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:00269c
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:000caf
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:00243a
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:002694
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:0013d1
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:002e10
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG013016
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG010973
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG015654
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG012278
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG023392
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG003067
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG006206
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG002973
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_08809
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_08812
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_06015
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_08817
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_12517
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_08816
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_10629
Tribolium castaneum
Red flour beetle
Tcas\TC009768
Tribolium castaneum
Red flour beetle
Tcas\TC009058
Tribolium castaneum
Red flour beetle
Tcas\TC033798
Tribolium castaneum
Red flour beetle
Tcas\TC033687
Tribolium castaneum
Red flour beetle
Tcas\TC031184
Tribolium castaneum
Red flour beetle
Tcas\TC033672
Pediculus humanus
Human body louse
Phum\PHUM119370
Pediculus humanus
Human body louse
Phum\PHUM311500
Pediculus humanus
Human body louse
Phum\PHUM238090
Pediculus humanus
Human body louse
Phum\PHUM513440
Pediculus humanus
Human body louse
Phum\PHUM313690
Rhodnius prolixus
Kissing bug
Rpro\RPRC001025
Rhodnius prolixus
Kissing bug
Rpro\RPRC001126
Rhodnius prolixus
Kissing bug
Rpro\RPRC001172
Rhodnius prolixus
Kissing bug
Rpro\RPRC003852
Rhodnius prolixus
Kissing bug
Rpro\RPRC009584
Cimex lectularius
Bed bug
Clec\CLEC006259
Cimex lectularius
Bed bug
Clec\CLEC001067
Cimex lectularius
Bed bug
Clec\CLEC005913
Cimex lectularius
Bed bug
Clec\CLEC002699
Cimex lectularius
Bed bug
Clec\CLEC008368
Cimex lectularius
Bed bug
Clec\CLEC001066
Cimex lectularius
Bed bug
Clec\CLEC002894
Cimex lectularius
Bed bug
Clec\CLEC003423
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI008824
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI007121
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI006939
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_16084
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_18011
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_18425
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_18668
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_18426
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_17794
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0Q4M )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR005096
Strigamia maritima
European centipede
Smar\SMAR005092
Strigamia maritima
European centipede
Smar\SMAR008234
Strigamia maritima
European centipede
Smar\SMAR009796
Strigamia maritima
European centipede
Smar\SMAR009772
Strigamia maritima
European centipede
Smar\SMAR009760
Ixodes scapularis
Black-legged tick
Isca\ISCW023034
Ixodes scapularis
Black-legged tick
Isca\ISCW010905
Ixodes scapularis
Black-legged tick
Isca\ISCW009659
Ixodes scapularis
Black-legged tick
Isca\ISCW021651
Ixodes scapularis
Black-legged tick
Isca\ISCW003447
Ixodes scapularis
Black-legged tick
Isca\ISCW023035
Ixodes scapularis
Black-legged tick
Isca\ISCW007282
Ixodes scapularis
Black-legged tick
Isca\ISCW012102
Ixodes scapularis
Black-legged tick
Isca\ISCW013860
Ixodes scapularis
Black-legged tick
Isca\ISCW018267
Ixodes scapularis
Black-legged tick
Isca\ISCW018495
Ixodes scapularis
Black-legged tick
Isca\ISCW010738
Ixodes scapularis
Black-legged tick
Isca\ISCW003563
Ixodes scapularis
Black-legged tick
Isca\ISCW011259
Ixodes scapularis
Black-legged tick
Isca\ISCW021654
Ixodes scapularis
Black-legged tick
Isca\ISCW019254
Ixodes scapularis
Black-legged tick
Isca\ISCW021946
Ixodes scapularis
Black-legged tick
Isca\ISCW023036
Ixodes scapularis
Black-legged tick
Isca\ISCW014090
Ixodes scapularis
Black-legged tick
Isca\ISCW001390
Stegodyphus mimosarum
African social velvet spider
Smim\KFM68563.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM76761.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM72726.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM82209.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM73339.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM76402.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM60635.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM71771.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM61108.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM60636.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM64804.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM72593.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM57435.1
Tetranychus urticae
Two-spotted spider mite
Turt\tetur09g06440
Tetranychus urticae
Two-spotted spider mite
Turt\tetur06g05200
Tetranychus urticae
Two-spotted spider mite
Turt\tetur10g05580
Tetranychus urticae
Two-spotted spider mite
Turt\tetur01g07530
Tetranychus urticae
Two-spotted spider mite
Turt\tetur06g04770
Tetranychus urticae
Two-spotted spider mite
Turt\tetur14g03620
Tetranychus urticae
Two-spotted spider mite
Turt\tetur23g02210
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_60359
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_44172
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_20705
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_68255
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_60346
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_41072
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_62190
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_48053
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_240048
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_59059
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_48816
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_48347
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G04T1 )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Fn3/Igf_2
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Hypp_52
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Nphs1L
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_028889gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_000407gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_020210gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_014032gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Hypp_1693
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Igf_22
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_012353gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_017577gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Igf_4
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_004544gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Fn3/Igf_34
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Hypp_1098
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Igf_20
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Fn3/Igf_10
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Fn3/Egff_6
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Fn3/Igf
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Fn3/Igf_40
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Igf_6
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Igf_16
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Fn3/Igf_28
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v7.1)
Drosophila melanogaster (Fruit fly) (15)
Gene Symbol
Score
Source
Compara
eggNOG
Homologene
Inparanoid
Isobase
OrthoDB
OrthoFinder
orthoMCL
Panther
RoundUp
Alignment
side-III
4 of 10
side-IV
4 of 10
side-VIII
4 of 10
side-VII
4 of 10
side-VI
4 of 10
side-V
4 of 10
side
3 of 10
nrm
2 of 10
CG45263
1 of 10
ed
1 of 10
fred
1 of 10
hbs
1 of 10
kirre
1 of 10
rst
1 of 10
sns
1 of 10
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
     
    Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    Functional Complementation Data
    Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
    Interactions
    Summary of Physical Interactions
    esyN Network Diagram
    Show neighbor-neighbor interactions:
    Select Layout:
    Legend:
    Protein
    RNA
    Selected Interactor(s)
    Interactions Browser
    View in Interactions Browser
    Please see the Physical Interaction reports below for full details
    protein-protein
    Physical Interaction
    Assay
    References
    side-II - beat-VI
    surface plasmon resonance, predetermined participant
    (Li et al., 2017)
    side-II - side-III
    enzyme linked immunosorbent assay
    (Ozkan et al., 2013)
    Summary of Genetic Interactions
    esyN Network Diagram
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    External Data
    Linkouts
    BioGRID - A database of protein and genetic interactions.
    DroID - A comprehensive database of gene and protein interactions.
    InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
    MIST (protein-protein) - An integrated Molecular Interaction Database
    Pathways
    Gene Group - Pathway Membership (FlyBase)
    External Data
    Linkouts
    Genomic Location and Detailed Mapping Data
    Chromosome (arm)
    2L
    Recombination map
    2-50
    Cytogenetic map
    35B7-35B7
    Sequence location
    2L:14,907,489..14,972,300 [-]
    FlyBase Computed Cytological Location
    Cytogenetic map
    Evidence for location
    35B7-35B7
    Limits computationally determined from genome sequence between P{EP}elBEP2039&P{PZ}osprJ571 and P{lacW}Su(H)k07904
    Experimentally Determined Cytological Location
    Cytogenetic map
    Notes
    References
    Experimentally Determined Recombination Data
    Location
    2-50
    (FlyBase, 2016)
    2-47.7
    (Comeron et al., 2012)
    Left of (cM)
    Right of (cM)
    Notes
    Stocks and Reagents
    Stocks (9)
    Genomic Clones (54)
    cDNA Clones (22)
     

    Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

    cDNA clones, fully sequences
    BDGP DGC clones
    Other clones
    Drosophila Genomics Resource Center cDNA clones

    For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

    cDNA Clones, End Sequenced (ESTs)
    BDGP DGC clones
      Other clones
      RNAi and Array Information
      Linkouts
      DRSC - Results frm RNAi screens
      GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
      Antibody Information
      Laboratory Generated Antibodies
       
      Commercially Available Antibodies
       
      Other Information
      Relationship to Other Genes
      Source for database identify of
      Source for identity of: side-II CG42313
      (Li et al., 2017)
      Source for database merge of
      Source for merge of: BG:DS01219 .3 CG15275
      (Misra, 2000.4.12)
      Source for merge of: BG:DS03144 .1 CG15276
      (Misra, 2000.4.5)
      Source for merge of: CG33515 CG15277
      (FlyBase Genome Annotators, 2008)
      Source for merge of: CG15275 CG15276
      (FlyBase Genome Annotators, 2005)
      Additional comments
      Annotations CG33515 and CG15277 merged as CG42313 in release 5.9 of the genome annotation.
      (FlyBase Genome Annotators, 2008)
      Annotations CG15275 and CG15276 merged as CG33515 in release 4.1 of the genome annotation.
      (FlyBase Genome Annotators, 2005)
      Other Comments
      Origin and Etymology
      Discoverer
      Etymology
      Named 'side-II' based on its phylogenetic relationship to 'side'.
      (Li et al., 2017)
      Identification
      External Crossreferences and Linkouts ( 40 )
      Sequence Crossreferences
      NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
      GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
      GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
      RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
      UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
      Other crossreferences
      Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
      Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
      Flygut - An atlas of the Drosophila adult midgut
      FlyMine - An integrated database for Drosophila genomics
      GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
      iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
      InterPro - A database of protein families, domains and functional sites
      KEGG Genes - Molecular building blocks of life in the genomic space.
      modMine - A data warehouse for the modENCODE project
      Linkouts
      BioGRID - A database of protein and genetic interactions.
      DroID - A comprehensive database of gene and protein interactions.
      DRSC - Results frm RNAi screens
      FLIGHT - Cell culture data for RNAi and other high-throughput technologies
      FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
      FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
      InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
      MIST (protein-protein) - An integrated Molecular Interaction Database
      Synonyms and Secondary IDs (13)
      Reported As
      Symbol Synonym
      42313
      (Ozkan et al., 2013)
      BG:DS01219.3
      (Giot et al., 2003, Ashburner et al., 1999, Ashburner et al., 1999, Ashburner et al., 1999.10.12)
      BG:DS03144.1
      (Ashburner et al., 1999, Ashburner et al., 1999, Ashburner et al., 1999.10.12)
      BG:SD01219.3
      (Bolshakov et al., 2002)
      CG15275
      (Vogel et al., 2003)
      CG15276
      CG15277
      (Keleman et al., 2009.8.5)
      CG33515
      (Keleman et al., 2009.8.5, Firth and Baker, 2007)
      CG42313
      (Li et al., 2017, Chaston et al., 2015, Ashwal-Fluss et al., 2014, Ozkan et al., 2013, Ozkan et al., 2013, FlyBase Genome Annotators, 2008)
      CT35222
      (Hynes and Zhao, 2000)
      cg15277
      (Xu et al., 2003)
      side-II
      (Li et al., 2017, Transgenic RNAi Project members, 2017-)
      Name Synonyms
      CG15277
      CG33515
      sidestep II
      Secondary FlyBase IDs
      • FBgn0053515
      • FBgn0028890
      • FBgn0028914
      • FBgn0032556
      • FBgn0032557
      • FBtr0080678
      • FBpp0080240
      • FBtr0080679
      • FBpp0080241
      • FBgn0032555
      Datasets (0)
      Study focus (0)
      Experimental Role
      Project
      Project Type
      Title
      References (42)