• Home
• Tools
  • Tools Overview
  • Query Tools

    
    • QuickSearch
    • QueryBuilder
    • TermLink
    • CytoSearch
    • Interactions Browser
    • ImageBrowse
    • Find A Person
    • Google™ FlyBase
  • Genomic/Map Tools

    
    • BLAST
    • GBrowse
    • CytoSearch
    • Aberrations Maps
    • Chromosome Maps
    • Coordinates Converter
  • Retrieve/Convert

    
    • Batch Download
    • Coordinates Converter
    • ID Converter
  • Data Submission

    
    • Fast-Track Your Paper
    • Submit Personal Comm
    • Add A New Person
    • Update Person Info
  • People

    
    • Find A Person
    • Add A New Person
    • Update Person Info
• Files
  • Files Overview
  • Downloads:
  • Precomputed files
  • Archived data
  • Releases (FTP)
  • Genomes (FTP)
  • AAA data (FTP)
  • Lists:
  • Transposons (Dmel)
  • Transposons (other)
  • Vectors & Constructs
  • Anatomical Terms
  • Map Conversion
• Species
  • Phylogeny
  • Sequenced Species
  • Synteny Table
  • Color Illustrations
  • Abbreviations
• Documents
  • About FlyBase
  • Reference Manual:
  • Sections
  • Contents
  • Nomenclature
  • Release Notes
• Resources
  • All Resources
  • Model Organisms
  • Stock Collections
  • Other links:
  • BDGP
  • DGRC
  • FlyExpress
  • Interactive Fly
  • modENCODE
  • Textpresso for Fly
• News
  • News
  • FlyBase Forum
  • FlyBase Positions
  • Meetings
  • Courses
  • Fly Board
  • White papers
  • Funding
  • bionet.dros
• Help
  • Google™ FlyBase
  • Site Map
  • FAQs
  • FlyBase Guides
  • Video Tutorials
  • Report help
  • New to Flies
  • Pers. comm.
  • Author guidelines
  • Contact FlyBase
• Archives
  • Prior Release
  • Other Archives
  • Coordinate Converter

Gene Dmel\CG42336

General Information
Symbol	Dmel\CG42336	Species	D. melanogaster
Name		Annotation symbol	CG42336
Feature type	protein_coding_gene	FlyBase ID	FBgn0259238
Gene Model Status	Current	Stock availability	6 publicly available
Also Known As	CG13210
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	47F1-47F1	Sequence location	2R:7,182,041..7,185,041 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG42336 (FBgn0259238). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 7 alleles are reported. No phenotypic data is available. It has 5 annotated transcripts and 5 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 12-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, larval central nervous system, larval/adult midgut, larval/adult hindgut, larval/adult fat body, larval salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult central nervous system, adult crop, larval/adult Malpighian tubules, adult heart, adult salivary gland, adult carcass. Gene sequence location is 2R:7182041..7185041.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10	Controlled Vocabulary Terms day 42 of adulthood day 41 of adulthood day 30 of adulthood day 49 of adulthood day 17 of adulthood day 45 of adulthood day 8 of adulthood day 26 of adulthood day 21 of adulthood day 13 of adulthood day 25 of adulthood day 20 of adulthood day 22 of adulthood day 39 of adulthood day 7 of adulthood day 36 of adulthood day 11 of adulthood day 37 of adulthood day 27 of adulthood day 18 of adulthood day 19 of adulthood day 28 of adulthood day 9 of adulthood day 29 of adulthood adult heart day 40 of adulthood day 16 of adulthood day 24 of adulthood day 15 of adulthood day 33 of adulthood day 43 of adulthood day 47 of adulthood day 38 of adulthood day 32 of adulthood day 48 of adulthood day 23 of adulthood day 35 of adulthood day 12 of adulthood day 10 of adulthood day 31 of adulthood day 34 of adulthood day 44 of adulthood day 14 of adulthood day 46 of adulthood
FB2012_01	Sequence features HFA06333 HFA06332 BKN46535 HFA05273 BKN29998 BKN32735
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 47F1-47F1   Limits computationally determined from genome sequence between P{PZ}rM547 and P{lacW}Fppsk06103&P{lacW}Fppsk03514
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG42336 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene merge based on EST/cDNA data.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG42336-RB FBtr0299853  NM_136824   525   65 CG42336-RC FBtr0299854  NM_165820   747   138 CG42336-RD FBtr0299855  NM_001144172   635   162 CG42336-RE FBtr0299856  NM_136823   745   140 CG42336-RF FBtr0303157  NM_001201978   917   140
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG42336-PB   FBpp0289131   7.4   65   10.34     NP_610668   AAF58673 CG42336-PC   FBpp0289132   15.7   138   10.33     NP_725026   AAF58675 CG42336-PD   FBpp0289133   18.5   162   10.53     NP_001137644   ACL83098 CG42336-PE   FBpp0289134   15.6   140   6.28     NP_610667   AAF58674 CG42336-PF   FBpp0292256   15.6   140   6.28     NP_001188907   ADV37154
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE013599 AAF58673   AE013599 AAF58674   AE013599 AAF58675   AE013599 ACL83098   AE013599 ADV37154   AI946029   AY113250 AAM29255   AZ300921   BF499190   BT099522   CO179754   CO190836   CO271549   CO286751   CO288752   CO294366   CO305959   CO318317   CO340737   EC069529   EC071609   EC229995   EC235913   EC242415   EC250077   EL872050   EL872176   EL872298   EL872420   GH948133   GH974364
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	A1Z8I8 Q7JWT7 A1Z8I6 B7YZF1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0259238    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0259238 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 12-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0259238 expression level Developmental Stage   Expression Level embryo 00-02hr    1286 embryo 02-04hr    2065 embryo 04-06hr    3230 embryo 06-08hr    3630 embryo 08-10hr    3104 embryo 10-12hr    3385 embryo 12-14hr    4111 embryo 14-16hr    3266 embryo 16-18hr    3053 embryo 18-20hr    2765 embryo 20-22hr    3923 embryo 22-24hr    4035 larva L1    4834 larva L2    9760 larva L3 12hr old    7326 larva L3 puffstage 1-2    5846 larva L3 puffstage 3-6    3232 larva L3 puffstage 7-9    2870 white prepupae new    2671 white prepupae 12hr    3765 white prepupae 24hr    4854 pupae 2d postWPP    5545 pupae 3d postWPP    2205 pupae 4d postWPP    1248 adult male 01day    2306 adult male 05day    2213 adult male 30day    1897 adult female 01day    1829 adult female 05day    2407 adult female 30day    2672 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1286) embryo 02-04hr  (2065) embryo 04-06hr  (3230) embryo 06-08hr  (3630) embryo 08-10hr  (3104) embryo 10-12hr  (3385) embryo 12-14hr  (4111) embryo 14-16hr  (3266) embryo 16-18hr  (3053) embryo 18-20hr  (2765) embryo 20-22hr  (3923) embryo 22-24hr  (4035) larva L1  (4834) larva L2  (9760) larva L3 12hr old  (7326) larva L3 puffstage 1-2  (5846) larva L3 puffstage 3-6  (3232) larva L3 puffstage 7-9  (2870) white prepupae new  (2671) white prepupae 12hr  (3765) white prepupae 24hr  (4854) pupae 2d postWPP  (5545) pupae 3d postWPP  (2205) pupae 4d postWPP  (1248) adult male 01day  (2306) adult male 05day  (2213) adult male 30day  (1897) adult female 01day  (1829) adult female 05day  (2407) adult female 30day  (2672) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1286 embryo 02-04hr  (2065) embryo 04-06hr  (3230) embryo 06-08hr  (3630) embryo 08-10hr  (3104) embryo 10-12hr  (3385) embryo 12-14hr  (4111) embryo 14-16hr  (3266) embryo 16-18hr  (3053) embryo 18-20hr  (2765) embryo 20-22hr  (3923) embryo 22-24hr  (4035) larva L1  (4834) larva L2  (9760) larva L3 12hr old  (7326) larva L3 puffstage 1-2  (5846) larva L3 puffstage 3-6  (3232) larva L3 puffstage 7-9  (2870) white prepupae new  (2671) white prepupae 12hr  (3765) white prepupae 24hr  (4854) pupae 2d postWPP  (5545) pupae 3d postWPP  (2205) pupae 4d postWPP    1248 adult male 01day  (2306) adult male 05day  (2213) adult male 30day  (1897) adult female 01day  (1829) adult female 05day  (2407) adult female 30day  (2672) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1286 embryo 02-04hr    2065 embryo 04-06hr    3230 embryo 06-08hr    3630 embryo 08-10hr    3104 embryo 10-12hr    3385 embryo 12-14hr    4111 embryo 14-16hr    3266 embryo 16-18hr    3053 embryo 18-20hr    2765 embryo 20-22hr    3923 embryo 22-24hr    4035 larva L1    4834 larva L2    9760 larva L3 12hr old    7326 larva L3 puffstage 1-2    5846 larva L3 puffstage 3-6    3232 larva L3 puffstage 7-9    2870 white prepupae new    2671 white prepupae 12hr    3765 white prepupae 24hr    4854 pupae 2d postWPP    5545 pupae 3d postWPP    2205 pupae 4d postWPP    1248 adult male 01day    2306 adult male 05day    2213 adult male 30day    1897 adult female 01day    1829 adult female 05day    2407 adult female 30day    2672 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1286 embryo 02-04hr    2065 embryo 04-06hr    3230 embryo 06-08hr    3630 embryo 08-10hr    3104 embryo 10-12hr    3385 embryo 12-14hr    4111 embryo 14-16hr    3266 embryo 16-18hr    3053 embryo 18-20hr    2765 embryo 20-22hr    3923 embryo 22-24hr    4035 larva L1    4834 larva L2    9760 larva L3 12hr old    7326 larva L3 puffstage 1-2    5846 larva L3 puffstage 3-6    3232 larva L3 puffstage 7-9    2870 white prepupae new    2671 white prepupae 12hr    3765 white prepupae 24hr    4854 pupae 2d postWPP    5545 pupae 3d postWPP    2205 pupae 4d postWPP    1248 adult male 01day    2306 adult male 05day    2213 adult male 30day    1897 adult female 01day    1829 adult female 05day    2407 adult female 30day    2672 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0259238 expression level Developmental Stage   Expression Level embryo 00-02hr    1286 embryo 02-04hr    2065 embryo 04-06hr    3230 embryo 06-08hr    3630 embryo 08-10hr    3104 embryo 10-12hr    3385 embryo 12-14hr    4111 embryo 14-16hr    3266 embryo 16-18hr    3053 embryo 18-20hr    2765 embryo 20-22hr    3923 embryo 22-24hr    4035 larva L1    4834 larva L2    9760 larva L3 12hr old    7326 larva L3 puffstage 1-2    5846 larva L3 puffstage 3-6    3232 larva L3 puffstage 7-9    2870 white prepupae new    2671 white prepupae 12hr    3765 white prepupae 24hr    4854 pupae 2d postWPP    5545 pupae 3d postWPP    2205 pupae 4d postWPP    1248 adult male 01day    2306 adult male 05day    2213 adult male 30day    1897 adult female 01day    1829 adult female 05day    2407 adult female 30day    2672 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1286) embryo 02-04hr  (2065) embryo 04-06hr  (3230) embryo 06-08hr  (3630) embryo 08-10hr  (3104) embryo 10-12hr  (3385) embryo 12-14hr  (4111) embryo 14-16hr  (3266) embryo 16-18hr  (3053) embryo 18-20hr  (2765) embryo 20-22hr  (3923) embryo 22-24hr  (4035) larva L1  (4834) larva L2  (9760) larva L3 12hr old  (7326) larva L3 puffstage 1-2  (5846) larva L3 puffstage 3-6  (3232) larva L3 puffstage 7-9  (2870) white prepupae new  (2671) white prepupae 12hr  (3765) white prepupae 24hr  (4854) pupae 2d postWPP  (5545) pupae 3d postWPP  (2205) pupae 4d postWPP  (1248) adult male 01day  (2306) adult male 05day  (2213) adult male 30day  (1897) adult female 01day  (1829) adult female 05day  (2407) adult female 30day  (2672) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1286 embryo 02-04hr  2065 embryo 04-06hr  (3230) embryo 06-08hr  (3630) embryo 08-10hr  (3104) embryo 10-12hr  (3385) embryo 12-14hr  (4111) embryo 14-16hr  (3266) embryo 16-18hr  (3053) embryo 18-20hr  (2765) embryo 20-22hr  (3923) embryo 22-24hr  (4035) larva L1  (4834) larva L2  (9760) larva L3 12hr old  (7326) larva L3 puffstage 1-2  (5846) larva L3 puffstage 3-6  (3232) larva L3 puffstage 7-9  (2870) white prepupae new  (2671) white prepupae 12hr  (3765) white prepupae 24hr  (4854) pupae 2d postWPP  (5545) pupae 3d postWPP  2205 pupae 4d postWPP    1248 adult male 01day  2306 adult male 05day  2213 adult male 30day  1897 adult female 01day  1829 adult female 05day  2407 adult female 30day  (2672) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1286 embryo 02-04hr    2065 embryo 04-06hr    3230 embryo 06-08hr    3630 embryo 08-10hr    3104 embryo 10-12hr    3385 embryo 12-14hr    4111 embryo 14-16hr    3266 embryo 16-18hr    3053 embryo 18-20hr    2765 embryo 20-22hr    3923 embryo 22-24hr    4035 larva L1    4834 larva L2    9760 larva L3 12hr old    7326 larva L3 puffstage 1-2    5846 larva L3 puffstage 3-6    3232 larva L3 puffstage 7-9    2870 white prepupae new    2671 white prepupae 12hr    3765 white prepupae 24hr    4854 pupae 2d postWPP    5545 pupae 3d postWPP    2205 pupae 4d postWPP    1248 adult male 01day    2306 adult male 05day    2213 adult male 30day    1897 adult female 01day    1829 adult female 05day    2407 adult female 30day    2672 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1286 embryo 02-04hr    2065 embryo 04-06hr    3230 embryo 06-08hr    3630 embryo 08-10hr    3104 embryo 10-12hr    3385 embryo 12-14hr    4111 embryo 14-16hr    3266 embryo 16-18hr    3053 embryo 18-20hr    2765 embryo 20-22hr    3923 embryo 22-24hr    4035 larva L1    4834 larva L2    9760 larva L3 12hr old    7326 larva L3 puffstage 1-2    5846 larva L3 puffstage 3-6    3232 larva L3 puffstage 7-9    2870 white prepupae new    2671 white prepupae 12hr    3765 white prepupae 24hr    4854 pupae 2d postWPP    5545 pupae 3d postWPP    2205 pupae 4d postWPP    1248 adult male 01day    2306 adult male 05day    2213 adult male 30day    1897 adult female 01day    1829 adult female 05day    2407 adult female 30day    2672 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0259238    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0259238 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, larval central nervous system, larval/adult midgut, larval/adult hindgut, larval/adult fat body, larval salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult central nervous system, adult crop, larval/adult Malpighian tubules, adult heart, adult salivary gland, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Heatmap Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea no informative data Larval Carcass no informative data Adult Head no informative data Adult Eye no informative data Adult Brain no informative data Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary no informative data Adult Testis no informative data Adult Male Accessory Gland no informative data Adult Carcass no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_09
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0259238 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13211-RA;CG13211-RA;CG13210-RA;CG13211-RB
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG42336GD1929 Phenotype manifest in Allele
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of CG42336 Class Mutagen Stocks Known lesion CG42336DG03405 1 -- CG42336EP1146 P-element activity 1 -- CG42336EY04897 1 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG42336 Class Mutagen Stocks Known lesion CG42336GD1929 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42336KK109998 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42336KK112735 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42336GD3498 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel6060 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{KK109998} NA P{KK112735} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}CG42336EP1146 NA P{EP}EP303EP303 NA P{EPgy2}CG42336EY04897 NA insertion of enhancer trap P{lacW}l(2)SH1335SH1335 No miscellaneous insertions P{wHy}CG42336DG03405 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG42336 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 61999 DroID - A comprehensive database of gene and protein interactions. • FBgn0259238 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36205
Orthologs
Genome-wide drosophilid orthologs	Dana\GF12413 Dana\GF12414 Dere\GG22672 Dere\GG22673 Dgri\GH21929 Dgri\GH21930 Dmoj\GI19637 Dmoj\GI19638 Dper\GL16738 Dper\GL16739 Dpse\GA12124 Dpse\GA12125 Dsec\GM20450 Dsec\GM20451 Dsim\GD25918 Dsim\GD25919 Dvir\GJ15003 Dvir\GJ15004 Dwil\GK21617 Dwil\GK21618 Dyak\GE13027 Dyak\GE13028
Curated drosophilid orthologs	Dpse\GA12124   Dpse\GA12125
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0230734 FBgn0223609 FBgn0202204 FBgn0197197 FBgn0175333 FBgn0072173 FBgn0154343 FBgn0142375 FBgn0129391 FBgn0114838 FBgn0089451
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	16991 w1118; P{EP}CG42336EP1146 21014 y1 w67c23; P{wHy}CG42336DG03405 16623 y1 w67c23; P{EPgy2}CG42336EY04897
VDRC	v103991 P{KK112735}VIE-260B v104546 P{KK109998}VIE-260B v39541 w1118; P{GD1929}v39541
Genomic Clones ( 2 )
	BACR09B12 BACR29G22 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 24 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT13707 LP15064
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	76407 166335 bs19g12 CK01.61A.E6 CK01.62A.H12 CK01.100A.D10 CK01.169B.C4 EC00141 EK049864 EK063751 EK069309 EK103842 EK206736 EK249906 EK271531 EP11237 IP04041 IP04141 IP04241 IP04341 RP004201714 RP004365224
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0259238 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36205 36206
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG13210 CG13211 (FlyBase Genome Annotators, 2008) Source for merge of: CG13211 BcDNA:AT13707 (FlyBase, 1996-)
Additional comments	Annotations CG13210 and CG13211 merged as CG42336 in release 5.9 of the genome annotation. (FlyBase Genome Annotators, 2008) Source for merge of CG13211 BcDNA:AT13707 was shared cDNA (AT13707) (date:030602). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_136823 NM_136824 NM_165820 NM_001144172 NM_001201978 RefSeq (Proteins) • NP_610667 NP_610668 NP_725026 NP_001137644 NP_001188907 DDBJ / EMBL / GenBank • AAF58673 AAF58674 AAF58675 AAM29255 ACL83098 ADV37154 AI946029 AY113250 AZ300921 BF499190 Entrez Gene - A searchable database of RefSeq genes. • 36205 UniProtKB/TrEMBL • A1Z8I6 A1Z8I8 B7YZF1 Q7JWT7
Other Crossreferences
Linkouts
	BioGRID - A database of protein and genetic interactions • 61999 DroID - A comprehensive database of gene and protein interactions. • FBgn0259238 DRSC - Results from RNAi screens. • FBgn0259238 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0259238 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13211-RA;CG13211-RA;CG13210-RA;CG13211-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0259238 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36205 36206 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36205 modMine - Data generated by the modENCODE project. • FBgn0259238 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0230734 FBgn0223609 FBgn0202204 FBgn0197197 FBgn0175333 FBgn0072173 FBgn0154343 FBgn0142375 FBgn0129391 FBgn0114838 FBgn0089451
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	BcDNA:AT13707   CG13210 (Keleman et al., 2009.8.5, Fujikawa et al., 2009, Cammarato et al., 2011) CG13211 (Keleman et al., 2009.8.5) CG42336 (FlyBase Genome Annotators, 2008)
Name Synonym	CG13210   CG13211
Secondary FlyBase IDs
	FBgn0033612 FBgn0033613 FBgn0063338
References ( 20 )
Research paper	Fujikawa et al., 2009, Gene 446(1): 11--17 Characteristics of genes up-regulated and down-regulated after 24 h starvation in the head of Drosophila. [FBrf0208557] Schulz et al., 2004, Genetics 167(2): 707--723 A misexpression screen reveals effects of bag-of-marbles and TGF beta class signaling on the Drosophila male germ-line stem cell lineage. [FBrf0179436] Bidet, 2003, Mech. Dev. 120(9): 991--1007 Modifiers of muscle and heart cell fate specification identified by gain-of-function screen in Drosophila. [FBrf0173131]
Supplementary material	Cammarato et al., 2011, PLoS ONE 6(4): Table S1. Proteins & Peptides. [FBrf0214682] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452] Oh et al., 2003, Genetics 163(1): Table S1. [FBrf0157097]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Myrick et al., 2008.12.2, Alignment of P{wHy} collection to current genome. Alignment of P{wHy} collection to current genome. [FBrf0206273] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Oliver, 2001.8.16, File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492]
FlyBase analysis	FlyBase Genome Annotators, 2008, Changes affecting gene model number or type in release 5.9 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 5.9 of the annotated D.melanogaster genome. [FBrf0204763] FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]