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Gene Dmel\CG42342

General Information
Symbol	Dmel\CG42342	Species	D. melanogaster
Name		Annotation symbol	CG42342
Feature type	protein_coding_gene	FlyBase ID	FBgn0259244
Gene Model Status	Current	Stock availability	19 publicly available
Also Known As	CG14889, CG42243
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	89B20-89B20	Sequence location	3R:12,328,523..12,397,082 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG42342 (FBgn0259244). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 22 alleles are reported. No phenotypic data is available. It has 10 annotated transcripts and 10 annotated polypeptides. Protein features are: Collagen triple helix repeat. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 06-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Gene sequence location is 3R:12328523..12397082.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	References Knowles-Barley, 2011.8.24, BrainTrap expression curation. FlyBase Curators, 2010-, Gene Ontology (GO) annotation review.
FB2012_01	Sequence features BKN31401 HFA15010 BKN42642 BKN41319 HFA15011 BKN31891 HFA13165 HFA14378 HFA15012
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 89B20-89B20   Limits computationally determined from genome sequence between P{lacW}CSN5L4032 and P{EP}MESK4EP1015
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG42342 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene merge based EST/cDNA data and on protein alignment (BLASTX) data. DGC clone appears problematic (GH13492): incomplete CDS.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG42342-RC FBtr0299895  NM_001144590   2966   585 CG42342-RD FBtr0299894  NM_001144589   4275   822 CG42342-RE FBtr0299896  NM_001144591   5682   688 CG42342-RF FBtr0299897  NM_001144592   3575   788 CG42342-RG FBtr0301062  NM_001170160   3666   619 CG42342-RH FBtr0303650  NM_001202305   4302   831 CG42342-RI FBtr0303651  NM_001202306   4560   780 CG42342-RJ FBtr0305004     4044   745 CG42342-RK FBtr0305005     4206   799 CG42342-RL FBtr0305006     4221   804
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG42342-PC   FBpp0289173   59.8   585   9.74     NP_001138062   ACL83520 CG42342-PD   FBpp0289172   84.1   822   5.98     NP_001138061   ACL83519 CG42342-PE   FBpp0289174   69.9   688   8.66     NP_001138063   ACL83521 CG42342-PF   FBpp0289175   80.1   788   8.63     NP_001138064   ACL83522 CG42342-PG   FBpp0290284   63.8   619   6.36     NP_001163631   ACZ94927 CG42342-PH   FBpp0292667   84.9   831   5.98     NP_001189234   ADV37325 CG42342-PI   FBpp0292668   78.9   780   8.63     NP_001189235   ADV37326 CG42342-PJ   FBpp0293541   76.3   745   5.47       CG42342-PK   FBpp0293542   81.7   799   5.68       CG42342-PL   FBpp0293543   82.2   804   5.97
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Collagen triple helix repeat (IPR008160)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 ACL83519   AE014297 ACL83520   AE014297 ACL83521   AE014297 ACL83522   AE014297 ACZ94927   AE014297 ADV37325   AE014297 ADV37326   AI135660   AI260269   AI294475   BI573488   BI575313   BI576133   BI584795   BI584814   BI615591   BI619110   BI621548   BT003557 AAO39561   BT022282   BT022507   BT030828   BT033008   CK135543   CO189854   CO279637   CO284581   CO294158   CO296719   CO299883   CO302365   CO309266   CO312961   CO313789   CO327634   CO333172   CO340833   CO343945   CZ467366   EC064144   EC076525   EC085216   EC211433   EC214078   EC222333   EC224931   EC232802   EC245875   EC246749   EC247666   EC251232   EC260366   EL872500   EL872501   EL877624   EL877744   EL877869   FL502538   FL502640   GH941301   GH941946   GH942730   GH942880   GH943861   GH944581   GH944749   GH945096   GH947826   GH947832   GH949279   GH949539   GH953222   GH953232   GH953484   GH953758   GH953829   GH954675   GH955360   GH957370   GH959664   GH959753   GH959771   GH960351   GH961568   GH961951   GH962301   GH965601   GH966241   GH967095   GH967543   GH970542   GH977030   GH978516   GH979174   GH979276   GH979835   GH980613   GH981368   GH981597   GH981631   GH981783   GH981872   GH984175   GH984332
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0259244    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0259244 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 06-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0259244 expression level Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr    732 embryo 04-06hr    2211 embryo 06-08hr    4007 embryo 08-10hr    3058 embryo 10-12hr    2673 embryo 12-14hr    2965 embryo 14-16hr    3300 embryo 16-18hr    2982 embryo 18-20hr    3052 embryo 20-22hr    1494 embryo 22-24hr    1509 larva L1    1196 larva L2    407 larva L3 12hr old    183 larva L3 puffstage 1-2    224 larva L3 puffstage 3-6    647 larva L3 puffstage 7-9    851 white prepupae new    1144 white prepupae 12hr    2112 white prepupae 24hr    2654 pupae 2d postWPP    2505 pupae 3d postWPP    950 pupae 4d postWPP    324 adult male 01day    395 adult male 05day    356 adult male 30day    232 adult female 01day    227 adult female 05day    70 adult female 30day    52 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr  (732) embryo 04-06hr  (2211) embryo 06-08hr  (4007) embryo 08-10hr  (3058) embryo 10-12hr  (2673) embryo 12-14hr  (2965) embryo 14-16hr  (3300) embryo 16-18hr  (2982) embryo 18-20hr  (3052) embryo 20-22hr  (1494) embryo 22-24hr  (1509) larva L1  (1196) larva L2  (407) larva L3 12hr old  (183) larva L3 puffstage 1-2  (224) larva L3 puffstage 3-6  (647) larva L3 puffstage 7-9  (851) white prepupae new  (1144) white prepupae 12hr  (2112) white prepupae 24hr  (2654) pupae 2d postWPP  (2505) pupae 3d postWPP  (950) pupae 4d postWPP  (324) adult male 01day  (395) adult male 05day  (356) adult male 30day  (232) adult female 01day  (227) adult female 05day    70 adult female 30day    52 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr    732 embryo 04-06hr  (2211) embryo 06-08hr  (4007) embryo 08-10hr  (3058) embryo 10-12hr  (2673) embryo 12-14hr  (2965) embryo 14-16hr  (3300) embryo 16-18hr  (2982) embryo 18-20hr  (3052) embryo 20-22hr  1494 embryo 22-24hr  1509 larva L1    1196 larva L2    407 larva L3 12hr old    183 larva L3 puffstage 1-2    224 larva L3 puffstage 3-6    647 larva L3 puffstage 7-9    851 white prepupae new    1144 white prepupae 12hr  (2112) white prepupae 24hr  (2654) pupae 2d postWPP  (2505) pupae 3d postWPP    950 pupae 4d postWPP    324 adult male 01day    395 adult male 05day    356 adult male 30day    232 adult female 01day    227 adult female 05day    70 adult female 30day    52 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr    732 embryo 04-06hr    2211 embryo 06-08hr    4007 embryo 08-10hr    3058 embryo 10-12hr    2673 embryo 12-14hr    2965 embryo 14-16hr    3300 embryo 16-18hr    2982 embryo 18-20hr    3052 embryo 20-22hr    1494 embryo 22-24hr    1509 larva L1    1196 larva L2    407 larva L3 12hr old    183 larva L3 puffstage 1-2    224 larva L3 puffstage 3-6    647 larva L3 puffstage 7-9    851 white prepupae new    1144 white prepupae 12hr    2112 white prepupae 24hr    2654 pupae 2d postWPP    2505 pupae 3d postWPP    950 pupae 4d postWPP    324 adult male 01day    395 adult male 05day    356 adult male 30day    232 adult female 01day    227 adult female 05day    70 adult female 30day    52 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr    732 embryo 04-06hr    2211 embryo 06-08hr    4007 embryo 08-10hr    3058 embryo 10-12hr    2673 embryo 12-14hr    2965 embryo 14-16hr    3300 embryo 16-18hr    2982 embryo 18-20hr    3052 embryo 20-22hr    1494 embryo 22-24hr    1509 larva L1    1196 larva L2    407 larva L3 12hr old    183 larva L3 puffstage 1-2    224 larva L3 puffstage 3-6    647 larva L3 puffstage 7-9    851 white prepupae new    1144 white prepupae 12hr    2112 white prepupae 24hr    2654 pupae 2d postWPP    2505 pupae 3d postWPP    950 pupae 4d postWPP    324 adult male 01day    395 adult male 05day    356 adult male 30day    232 adult female 01day    227 adult female 05day    70 adult female 30day    52 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0259244 expression level Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr    732 embryo 04-06hr    2211 embryo 06-08hr    4007 embryo 08-10hr    3058 embryo 10-12hr    2673 embryo 12-14hr    2965 embryo 14-16hr    3300 embryo 16-18hr    2982 embryo 18-20hr    3052 embryo 20-22hr    1494 embryo 22-24hr    1509 larva L1    1196 larva L2    407 larva L3 12hr old    183 larva L3 puffstage 1-2    224 larva L3 puffstage 3-6    647 larva L3 puffstage 7-9    851 white prepupae new    1144 white prepupae 12hr    2112 white prepupae 24hr    2654 pupae 2d postWPP    2505 pupae 3d postWPP    950 pupae 4d postWPP    324 adult male 01day    395 adult male 05day    356 adult male 30day    232 adult female 01day    227 adult female 05day    70 adult female 30day    52 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr  (732) embryo 04-06hr  (2211) embryo 06-08hr  (4007) embryo 08-10hr  (3058) embryo 10-12hr  (2673) embryo 12-14hr  (2965) embryo 14-16hr  (3300) embryo 16-18hr  (2982) embryo 18-20hr  (3052) embryo 20-22hr  (1494) embryo 22-24hr  (1509) larva L1  (1196) larva L2  (407) larva L3 12hr old  (183) larva L3 puffstage 1-2  (224) larva L3 puffstage 3-6  (647) larva L3 puffstage 7-9  (851) white prepupae new  (1144) white prepupae 12hr  (2112) white prepupae 24hr  (2654) pupae 2d postWPP  (2505) pupae 3d postWPP  (950) pupae 4d postWPP  (324) adult male 01day  (395) adult male 05day  (356) adult male 30day  (232) adult female 01day  (227) adult female 05day    70 adult female 30day    52 Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr    732 embryo 04-06hr  2211 embryo 06-08hr  (4007) embryo 08-10hr  (3058) embryo 10-12hr  (2673) embryo 12-14hr  (2965) embryo 14-16hr  (3300) embryo 16-18hr  (2982) embryo 18-20hr  (3052) embryo 20-22hr  1494 embryo 22-24hr  1509 larva L1    1196 larva L2    407 larva L3 12hr old    183 larva L3 puffstage 1-2    224 larva L3 puffstage 3-6    647 larva L3 puffstage 7-9    851 white prepupae new    1144 white prepupae 12hr  2112 white prepupae 24hr  (2654) pupae 2d postWPP  (2505) pupae 3d postWPP    950 pupae 4d postWPP    324 adult male 01day    395 adult male 05day    356 adult male 30day    232 adult female 01day    227 adult female 05day    70 adult female 30day    52 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr    732 embryo 04-06hr    2211 embryo 06-08hr    4007 embryo 08-10hr    3058 embryo 10-12hr    2673 embryo 12-14hr    2965 embryo 14-16hr    3300 embryo 16-18hr    2982 embryo 18-20hr    3052 embryo 20-22hr    1494 embryo 22-24hr    1509 larva L1    1196 larva L2    407 larva L3 12hr old    183 larva L3 puffstage 1-2    224 larva L3 puffstage 3-6    647 larva L3 puffstage 7-9    851 white prepupae new    1144 white prepupae 12hr    2112 white prepupae 24hr    2654 pupae 2d postWPP    2505 pupae 3d postWPP    950 pupae 4d postWPP    324 adult male 01day    395 adult male 05day    356 adult male 30day    232 adult female 01day    227 adult female 05day    70 adult female 30day    52 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr    732 embryo 04-06hr    2211 embryo 06-08hr    4007 embryo 08-10hr    3058 embryo 10-12hr    2673 embryo 12-14hr    2965 embryo 14-16hr    3300 embryo 16-18hr    2982 embryo 18-20hr    3052 embryo 20-22hr    1494 embryo 22-24hr    1509 larva L1    1196 larva L2    407 larva L3 12hr old    183 larva L3 puffstage 1-2    224 larva L3 puffstage 3-6    647 larva L3 puffstage 7-9    851 white prepupae new    1144 white prepupae 12hr    2112 white prepupae 24hr    2654 pupae 2d postWPP    2505 pupae 3d postWPP    950 pupae 4d postWPP    324 adult male 01day    395 adult male 05day    356 adult male 30day    232 adult female 01day    227 adult female 05day    70 adult female 30day    52 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0259244    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0259244 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Heatmap Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain no informative data Adult Thoracic-Abdominal Ganglion no informative data Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_11
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0259244 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG14889-RA;CG11769-RA;CG14888-RA;CG14890-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL4pnr-MD237 CG42342GD3022 lethal | pupal stage, with Scer\GAL4pnr-MD237 CG42342GD3022 viable CG42342c01692 viable, with Scer\GAL4pnr-MD237 CG42342GD8478 CG42342GD15269 Sterility Allele fertile CG42342c01692 Phenotype manifest in Allele
Classical Alleles ( 16 )
For All Classical Alleles Show
Allele of CG42342 Class Mutagen Stocks Known lesion CG42342c01692 piggyBac transposase 2 -- CG42342c00993 1 -- CG42342c03488 1 -- CG42342CB-6489-3 1 -- CG42342e03466 1 -- CG42342e04033 1 -- CG42342f01026 1 -- CG42342f01122 1 -- CG42342f01777 1 -- CG42342f04989 1 -- CG42342MI00081 1 -- CG42342c00834 0 -- CG42342c01642 0 -- CG42342CPTI000033 piggyBac transposase 0 Yes CG42342e03117 0 -- CG42342e03572 0 --
Alleles Carried on Transgenic Constructs ( 6 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG42342 Class Mutagen Stocks Known lesion CG42342GD3022 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG42342GD15269 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42342GD8478 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42342JF03063 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42342KK111401 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42342KK111891 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6270 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{KK111401} NA P{KK111891} NA P{TRiP.JF03063} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}CG42342MI00081 NA P{RS3}CG42342CB-6489-3 NA PBac{602.P.SVS-1}CG42342CPTI000033 NA PBac{PB}CG42342c00834 NA PBac{PB}CG42342c00993 NA PBac{PB}CG42342c01642 NA PBac{PB}CG42342c01692 NA PBac{PB}CG42342c03488 NA PBac{RB}CG42342e03117 NA PBac{RB}CG42342e03466 NA PBac{RB}CG42342e03572 NA PBac{RB}CG42342e04033 NA PBac{WH}CG42342f01026 NA PBac{WH}CG42342f01122 NA PBac{WH}CG42342f01777 NA PBac{WH}CG42342f04989 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
	There is no information supporting a biological process, cellular component or molecular function term for this gene. (Based on a review of available data on: 2011-03-17)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG42342 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 928290 DroID - A comprehensive database of gene and protein interactions. • FBgn0259244 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 7354466
Orthologs
Genome-wide drosophilid orthologs	Dana\GF17055 Dere\GG21610 Dere\GG21632 Dere\GG21643 Dere\GG21654 Dgri\GH20208 Dgri\GH20231 Dmoj\GI22357 Dmoj\GI22358 Dpse\GA30098 Dsec\GM15165 Dsec\GM15166 Dsim\GD19107 Dsim\GD19109 Dvir\GJ24388 Dvir\GJ24390 Dvir\GJ24391 Dvir\GJ24392 Dwil\GK11208 Dyak\GE24571 Dyak\GE24572 Dyak\GE24573 Dyak\GE24574
Curated drosophilid orthologs	Dpse\GA13325   Dpse\GA30098
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL005376-PA Aedes aegypti (mosquito) AGAP009581-PA Anopheles gambiae (mosquito) XP_392960.3 Apis mellifera (honey bee) 69147 Branchiostoma floridae (lancelet) XP_001891873.1 Brugia malayi (roundworm nematode) ENSBTAP00000015641 Bos taurus (bovine) CN02435 Caenorhabditis brenneri (small nematode) CBP32585 Caenorhabditis briggsae (nematode) CE41647 Caenorhabditis elegans (worm) ENSCAFP00000020609 Canis familiaris (dog) CPIJ006421 Culex pipens (mosquito) ENSCPOP00000002342 Cavia porcellus (guinea pig) RP36196 Caenorhabditis remanei (nematode) 208647 Capitella spl (polychaete worm) 116763 Daphnia pulex (daphnia) ENSECAP00000016224 Equus caballus (horse) ENSGACP00000011725 Gymnopilus aculeatus (mushroom) ENSGALP00000006805 Gallus gallus (chicken) 98795 Hypsipyla robusta (cedar shoot borer) ENSP00000381949 Homo sapiens (human) ISCW017189-PA Ixodes scapularis (deer tick) 230280 Lottia gigantea (owl limpet) ENSMODP00000015306 Monodelphis domestica (gray opossum) ENSMMUP00000007557 Macaca mulatta (rhesus monkey) ENSMUSP00000090141 Mus musculus (house mouse) 205488 Nematostella vectensis (starlet anemone) XP_001601865.1 Nasonia vitripennis (wasp) ENSOANP00000021890 Ornithorynchus anatinus (platypus) ENSORLP00000001317 Oryzias latipes (japanese killifish) PHUM005151-PA Pediculus humanus (human body louse) PP25039 Pristionchus pacificus (nematode) ENSPPYP00000002760 Pongo pygmaeus (orangutan) ENSPTRP00000043595 Pan troglodytes (chimpanzee) ENSRNOP00000049615 Rattus norvegicus (norway rat) Smp_083630 Schistosoma mansoni (trematode parasite) XP_970497.2 Tribolium castaneum (red flour beetle) ENSTNIP00000007053 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000012736 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000035284 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • LH25660 ISCW017189 FBgn0241685 FBgn0213219 FBgn0211472 FBgn0190616 FBgn0170086 JGI_V11_116763 FBgn0073365 FBgn0145086 FBgn0127695 FBgn0113832 FBgn0094074 BGIBMGA002746 GB10059 AGAP004169 PB26919
Stocks & Reagents
Stocks Listed in FlyBase ( 19 )
Harvard	- PBac{PB}CG42342c00993 - PBac{PB}CG42342c01692 - PBac{PB}CG42342c03488 - PBac{RB}CG42342e03466 - PBac{RB}CG42342e04033 - PBac{WH}CG42342f01026 - PBac{WH}CG42342f01122 - PBac{WH}CG42342f01777 - PBac{WH}CG42342f04989
VDRC	v102525 P{KK111891}VIE-260B v106004 P{KK111401}VIE-260B v9864 w1118; P{GD3022}v9864
	More stocks available...
Genomic Clones ( 2 )
	BACR01H23 BACR48L13 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 92 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	IP04710 IP07919 LP07855 LP23076
Other clones	IP04510
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH13492 LP03994 RH09113 RH24072 RH24096 RH30594 RH32637 RH45275 RH50081
Other clones	28184 42405 50846 54856 55898 66252 78850 81347 83338 105616 108034 214403.36 281260 DMG4-chr3R.21.022.pred.a EK045357 EK135536 EK166338 EK176834 EK184013 EK206221 EK214753 EK217051 EK230814 EK234061 EK306115 EP07752 EP11428 EP18410 IP04410 IP07619 IP07719 IP07819 RH52905 RP004060083 RP004099686 RP004110231 RP004124080 RP004125280 RP004129330 RP004132854 RP004133257 RP004182050 RP004188838 RP004199949 RP004200970 RP004204247 RP004204951 RP004226215 RP004228389 RP004229370 RP004230318 RP004232245 RP004235374 RP004237569 RP004239260 RP004239762 RP004246438 RP004247588 RP004251965 RP004253283 RP004256122 RP004256168 RP004258030 RP004261310 RP004269561 RP004303930 RP004425455 RP004466246 RP004472244 RP004481902 RP004490202 RP004526199 RP004529949 RP004532954 RP004546302 RP004553340 RP004553567 RP004553877
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0259244 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42009 42010 42011 42012 7354466
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG11769 CG42243 (FlyBase Genome Annotators, 2008) Source for merge of: CG14888 CG14889 CG14890 (FlyBase Genome Annotators, 2008)
Additional comments	Annotations CG14888, CG14889, and CG14890 merged as CG42243 in release 5.7 of the genome annotation. (FlyBase Genome Annotators, 2008) Annotations CG11769 and CG42243 merged as CG42342 in release 5.9 of the genome annotation. (FlyBase Genome Annotators, 2008)
Other Comments
	RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004) Identified with: LP07855 (BDGP-DGC) <up>FlyBase curator comment: EST subsequently found to be chimeric</up>. (BDGP Project Members, 2000-)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_001144589 NM_001144590 NM_001144591 NM_001144592 NM_001170160 NM_001202305 NM_001202306 RefSeq (Proteins) • NP_001138061 NP_001138062 NP_001138063 NP_001138064 NP_001163631 NP_001189234 NP_001189235 DDBJ / EMBL / GenBank • AAO39561 ACL83519 ACL83520 ACL83521 ACL83522 ACZ94927 ADV37325 ADV37326 AI135660 AI294475 BT003557 CZ467366 Entrez Gene - A searchable database of RefSeq genes. • 7354466
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Collagen triple helix repeat (IPR008160)
Linkouts
	BioGRID - A database of protein and genetic interactions • 928290 DroID - A comprehensive database of gene and protein interactions. • FBgn0259244 DRSC - Results from RNAi screens. • FBgn0259244 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0259244 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG14889-RA;CG11769-RA;CG14888-RA;CG14890-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0259244 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42009 42010 42011 42012 7354466 InParanoid A subset of ortholog calls from InParanoid. • AAEL005376-PA Aedes aegypti (mosquito) AGAP009581-PA Anopheles gambiae (mosquito) XP_392960.3 Apis mellifera (honey bee) 69147 Branchiostoma floridae (lancelet) XP_001891873.1 Brugia malayi (roundworm nematode) ENSBTAP00000015641 Bos taurus (bovine) CN02435 Caenorhabditis brenneri (small nematode) CBP32585 Caenorhabditis briggsae (nematode) CE41647 Caenorhabditis elegans (worm) ENSCAFP00000020609 Canis familiaris (dog) CPIJ006421 Culex pipens (mosquito) ENSCPOP00000002342 Cavia porcellus (guinea pig) RP36196 Caenorhabditis remanei (nematode) 208647 Capitella spl (polychaete worm) 116763 Daphnia pulex (daphnia) ENSECAP00000016224 Equus caballus (horse) ENSGACP00000011725 Gymnopilus aculeatus (mushroom) ENSGALP00000006805 Gallus gallus (chicken) 98795 Hypsipyla robusta (cedar shoot borer) ENSP00000381949 Homo sapiens (human) ISCW017189-PA Ixodes scapularis (deer tick) 230280 Lottia gigantea (owl limpet) ENSMODP00000015306 Monodelphis domestica (gray opossum) ENSMMUP00000007557 Macaca mulatta (rhesus monkey) ENSMUSP00000090141 Mus musculus (house mouse) 205488 Nematostella vectensis (starlet anemone) XP_001601865.1 Nasonia vitripennis (wasp) ENSOANP00000021890 Ornithorynchus anatinus (platypus) ENSORLP00000001317 Oryzias latipes (japanese killifish) PHUM005151-PA Pediculus humanus (human body louse) PP25039 Pristionchus pacificus (nematode) ENSPPYP00000002760 Pongo pygmaeus (orangutan) ENSPTRP00000043595 Pan troglodytes (chimpanzee) ENSRNOP00000049615 Rattus norvegicus (norway rat) Smp_083630 Schistosoma mansoni (trematode parasite) XP_970497.2 Tribolium castaneum (red flour beetle) ENSTNIP00000007053 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000012736 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000035284 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 7354466 modMine - Data generated by the modENCODE project. • FBgn0259244 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • LH25660 ISCW017189 FBgn0241685 FBgn0213219 FBgn0211472 FBgn0190616 FBgn0170086 JGI_V11_116763 FBgn0073365 FBgn0145086 FBgn0127695 FBgn0113832 FBgn0094074 BGIBMGA002746 GB10059 AGAP004169 PB26919
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	CG11769 (Keleman et al., 2009.8.5) CG14888 (Quijano et al., 2008) CG14889 (Toledano-Katchalski et al., 2007, Perkins et al., 2009, Quijano et al., 2008) CG14890   CG42243 (FlyBase Genome Annotators, 2008, Keleman et al., 2009.8.5) CG42342 (FlyBase Genome Annotators, 2008, Chatterjee et al., 2011)
Name Synonym	CG11769   CG14888   CG14889   CG14890   CG42243 (FlyBase Genome Annotators, 2008)
Secondary FlyBase IDs
	FBgn0038441 FBgn0038442 FBgn0038443 FBgn0038444 FBgn0250909
References ( 27 )
Generate a list of	All references relating to this gene ( 27 )
List References by type	Research paper  ( 4 ) Supplementary material  ( 4 ) Personal communication to FlyBase  ( 9 ) FlyBase analysis  ( 6 ) Computer file  ( 3 ) Automatic genome annotation  ( 1 )
Recent research papers ( 1 )
	Chatterjee et al., 2011, Development 138(6): 1099--1109 The female-specific Doublesex isoform regulates pleiotropic transcription factors to pattern genital development in Drosophila. [FBrf0213054] Show all research papers ...