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Gene Dmel\CG42342

General Information
Symbol	Dmel\CG42342	Species	D. melanogaster
Name		Annotation symbol	CG42342
Feature type	protein_coding_gene	FlyBase ID	FBgn0259244
Gene Model Status	Current	Stock availability	23 publicly available
Also Known As	CG14889, CG42243, CG11769
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	89B20-89B20	Sequence location	3R:12,328,492..12,397,085 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG42342 (FBgn0259244). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 28 alleles are reported. No phenotypic data is available. It has 12 annotated transcripts and 12 annotated polypeptides. Protein features are: Collagen triple helix repeat. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 06-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Gene sequence location is 3R:12328492..12397085.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 89B20-89B20   Limits computationally determined from genome sequence between P{lacW}CSN5L4032 and P{EP}MESK4EP1015
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG42342 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene merge based EST/cDNA data and on protein alignment (BLASTX) data. Gene model reviewed during 5.48 Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters. Low-frequency RNA-Seq exon junction(s) not annotated. DGC clone appears problematic (GH13492): incomplete CDS.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG42342-RD FBtr0299894  NM_001144589   4309   822 CG42342-RH FBtr0303650  NM_001202305   4336   831 CG42342-RK FBtr0305005  NM_001260213   4240   799 CG42342-RL FBtr0305006  NM_001260214   4255   804 CG42342-RM FBtr0336775  NM_001144591   5659   670 CG42342-RN FBtr0336776  NM_001144590   5644   665 CG42342-RO FBtr0336777  NM_001144592   3540   765 CG42342-RP FBtr0336778  NM_001202306   3555   770 CG42342-RQ FBtr0336779  NM_001170160   3646   601 CG42342-RR FBtr0336780  NM_001275711   3631   596 CG42342-RS FBtr0336781  NM_001260212   4267   808 CG42342-RT FBtr0336782  NM_001275712   4282   813
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG42342-PD   FBpp0289172   84.1   822   5.98     NP_001138061   ACL83519 CG42342-PH   FBpp0292667   84.9   831   5.98     NP_001189234   ADV37325 CG42342-PK   FBpp0293542   81.7   799   5.68     NP_001247142   AFH06460 CG42342-PL   FBpp0293543   82.2   804   5.97     NP_001247143   AFH06461 CG42342-PM   FBpp0307751   68.0   670   8.67     NP_001138063   ACL83521 CG42342-PN   FBpp0307752   67.5   665   8.23     NP_001138062   ACL83520 CG42342-PO   FBpp0307753   77.8   765   8.29     NP_001138064   ACL83522 CG42342-PP   FBpp0307754   78.3   770   8.63     NP_001189235   ADV37326 CG42342-PQ   FBpp0307755   61.9   601   6.36     NP_001163631   ACZ94927 CG42342-PR   FBpp0307756   61.4   596   6.05     NP_001262640   AGB96020 CG42342-PS   FBpp0307757   82.6   808   5.68     NP_001247141   AFH06459 CG42342-PT   FBpp0307758   83.1   813   5.97     NP_001262641   AGB96021
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Collagen triple helix repeat (IPR008160)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 ACL83519   AE014297 ACL83520   AE014297 ACL83521   AE014297 ACL83522   AE014297 ACZ94927   AE014297 ADV37325   AE014297 ADV37326   AE014297 AFH06459   AE014297 AFH06460   AE014297 AFH06461   AE014297 AGB96020   AE014297 AGB96021   AI135660   AI260269   AI294475   BI573488   BI575313   BI576133   BI584795   BI584814   BI615591   BI619110   BI621548   BT003557 AAO39561   BT022282   BT022507   BT030828   BT033008   CK135543   CO189854   CO279637   CO284581   CO294158   CO296719   CO299883   CO302365   CO309266   CO312961   CO313789   CO327634   CO333172   CO340833   CO343945   CZ467366   EC064144   EC076525   EC085216   EC211433   EC214078   EC222333   EC224931   EC232802   EC245875   EC246749   EC247666   EC251232   EC260366   EL872500   EL872501   EL877624   EL877744   EL877869   FL502538   FL502640   GH941301   GH941946   GH942730   GH942880   GH943861   GH944581   GH944749   GH945096   GH947826   GH947832   GH949279   GH949539   GH953222   GH953232   GH953484   GH953758   GH953829   GH954675   GH955360   GH957370   GH959664   GH959753   GH959771   GH960351   GH961568   GH961951   GH962301   GH965601   GH966241   GH967095   GH967543   GH970542   GH977030   GH978516   GH979174   GH979276   GH979835   GH980613   GH981368   GH981597   GH981631   GH981783   GH981872   GH984175   GH984332
UniProtKB/Swiss-Prot	B7Z0K8
UniProtKB/TrEMBL	E1JIM8
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References regulatory region FBsf0000435562 3R:12,377,712..12,378,682 evidence=Reporter construct (in vivo) (Junion et al., 2012, Halfon, 2012.6.19)
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 4 -- 6   central brain anlage in statu nascendi   (Fisher et al., 2012) dorsal head epidermis anlage in statu nascendi   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage in statu nascendi antennal anlage in statu nascendi   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage in statu nascendi visual anlage in statu nascendi   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage in statu nascendi embryonic stage 7 -- 8   antennal anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage central brain anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage dorsal head epidermis anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage visual anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage lateral head epidermis   (Fisher et al., 2012) organism | segmentally repeated   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) ventral nerve cord primordium   (Fisher et al., 2012) Comment:reported as ventral nerve cord anlage embryonic stage 9 -- 10   antennal primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium central brain primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium visual primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium dorsal head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium lateral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium ventral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium dorsal ectoderm   (Fisher et al., 2012) organism | segmentally repeated   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) ventral nerve cord primordium   (Fisher et al., 2012) embryonic stage 11 -- 12   central brain primordium   (Fisher et al., 2012) dorsal epidermis primordium   (Fisher et al., 2012) dorsal head epidermis primordium   (Fisher et al., 2012) Comment:reported as head epidermis primordium lateral head epidermis primordium   (Fisher et al., 2012) Comment:reported as head epidermis primordium ventral head epidermis primordium   (Fisher et al., 2012) Comment:reported as head epidermis primordium organism | segmentally repeated   (Fisher et al., 2012) pars intercerebralis primordium   (Fisher et al., 2012) ventral epidermis primordium   (Fisher et al., 2012) ventral nerve cord primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   dorsal head epidermis   (Fisher et al., 2012) embryonic anal pad   (Fisher et al., 2012) embryonic brain   (Fisher et al., 2012) embryonic central brain neuron   (Fisher et al., 2012) embryonic central brain pars intercerebralis   (Fisher et al., 2012) embryonic dorsal apodeme   (Fisher et al., 2012) embryonic dorsal epidermis   (Fisher et al., 2012) embryonic head epidermis   (Fisher et al., 2012) embryonic large intestine   (Fisher et al., 2012) embryonic Malpighian tubule   (Fisher et al., 2012) embryonic ventral apodeme   (Fisher et al., 2012) embryonic ventral epidermis   (Fisher et al., 2012) organism | segmentally repeated   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    47 central nervous system, pupae P8    100 head, virgin 1-day female    22 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    25 head, mated 4-day female    15 head, mated 20-day female    9 head, mated 1-day male    35 head, mated 4-day male    28 head, mated 20-day male    21 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    21 carcass, larvae L3 wandering    20 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    2 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    1 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3  (47) central nervous system, pupae P8  (100) head, virgin 1-day female    22 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    25 head, mated 4-day female    15 head, mated 20-day female    9 head, mated 1-day male  (35) head, mated 4-day male  (28) head, mated 20-day male    21 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    21 carcass, larvae L3 wandering    20 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    2 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    1 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    47 central nervous system, pupae P8    100 head, virgin 1-day female    22 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    25 head, mated 4-day female    15 head, mated 20-day female    9 head, mated 1-day male    35 head, mated 4-day male    28 head, mated 20-day male    21 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    21 carcass, larvae L3 wandering    20 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    2 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    1 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    47 central nervous system, pupae P8    100 head, virgin 1-day female    22 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    25 head, mated 4-day female    15 head, mated 20-day female    9 head, mated 1-day male    35 head, mated 4-day male    28 head, mated 20-day male    21 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    21 carcass, larvae L3 wandering    20 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    2 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    1 accessory gland, mated 4-day male    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    47 central nervous system, pupae P8    100 head, virgin 1-day female    22 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    25 head, mated 4-day female    15 head, mated 20-day female    9 head, mated 1-day male    35 head, mated 4-day male    28 head, mated 20-day male    21 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    21 carcass, larvae L3 wandering    20 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    2 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    1 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3  (47) central nervous system, pupae P8  (100) head, virgin 1-day female    22 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    25 head, mated 4-day female    15 head, mated 20-day female    9 head, mated 1-day male  (35) head, mated 4-day male  28 head, mated 20-day male    21 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    21 carcass, larvae L3 wandering    20 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    2 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    1 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    47 central nervous system, pupae P8    100 head, virgin 1-day female    22 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    25 head, mated 4-day female    15 head, mated 20-day female    9 head, mated 1-day male    35 head, mated 4-day male    28 head, mated 20-day male    21 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    21 carcass, larvae L3 wandering    20 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    2 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    1 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    16 central nervous system, larvae L3    47 central nervous system, pupae P8    100 head, virgin 1-day female    22 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    25 head, mated 4-day female    15 head, mated 20-day female    9 head, mated 1-day male    35 head, mated 4-day male    28 head, mated 20-day male    21 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    0 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    21 carcass, larvae L3 wandering    20 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    2 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    1 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 06-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    7 embryo 04-06hr    24 embryo 06-08hr    40 embryo 08-10hr    31 embryo 10-12hr    26 embryo 12-14hr    31 embryo 14-16hr    32 embryo 16-18hr    30 embryo 18-20hr    30 embryo 20-22hr    15 embryo 22-24hr    17 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    22 white prepupae 24hr    27 pupae 2d postWPP    25 pupae 3d postWPP    10 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    7 embryo 04-06hr    24 embryo 06-08hr  (40) embryo 08-10hr  (31) embryo 10-12hr  26 embryo 12-14hr  (31) embryo 14-16hr  (32) embryo 16-18hr  (30) embryo 18-20hr  (30) embryo 20-22hr    15 embryo 22-24hr    17 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    22 white prepupae 24hr  (27) pupae 2d postWPP    25 pupae 3d postWPP    10 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    7 embryo 04-06hr    24 embryo 06-08hr    40 embryo 08-10hr    31 embryo 10-12hr    26 embryo 12-14hr    31 embryo 14-16hr    32 embryo 16-18hr    30 embryo 18-20hr    30 embryo 20-22hr    15 embryo 22-24hr    17 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    22 white prepupae 24hr    27 pupae 2d postWPP    25 pupae 3d postWPP    10 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    7 embryo 04-06hr    24 embryo 06-08hr    40 embryo 08-10hr    31 embryo 10-12hr    26 embryo 12-14hr    31 embryo 14-16hr    32 embryo 16-18hr    30 embryo 18-20hr    30 embryo 20-22hr    15 embryo 22-24hr    17 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    22 white prepupae 24hr    27 pupae 2d postWPP    25 pupae 3d postWPP    10 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    1 adult female 30day    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    7 embryo 04-06hr    24 embryo 06-08hr    40 embryo 08-10hr    31 embryo 10-12hr    26 embryo 12-14hr    31 embryo 14-16hr    32 embryo 16-18hr    30 embryo 18-20hr    30 embryo 20-22hr    15 embryo 22-24hr    17 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    22 white prepupae 24hr    27 pupae 2d postWPP    25 pupae 3d postWPP    10 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    7 embryo 04-06hr    24 embryo 06-08hr  (40) embryo 08-10hr  31 embryo 10-12hr  26 embryo 12-14hr  31 embryo 14-16hr  32 embryo 16-18hr  30 embryo 18-20hr  30 embryo 20-22hr    15 embryo 22-24hr    17 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    22 white prepupae 24hr  27 pupae 2d postWPP    25 pupae 3d postWPP    10 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    7 embryo 04-06hr    24 embryo 06-08hr    40 embryo 08-10hr    31 embryo 10-12hr    26 embryo 12-14hr    31 embryo 14-16hr    32 embryo 16-18hr    30 embryo 18-20hr    30 embryo 20-22hr    15 embryo 22-24hr    17 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    22 white prepupae 24hr    27 pupae 2d postWPP    25 pupae 3d postWPP    10 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    7 embryo 04-06hr    24 embryo 06-08hr    40 embryo 08-10hr    31 embryo 10-12hr    26 embryo 12-14hr    31 embryo 14-16hr    32 embryo 16-18hr    30 embryo 18-20hr    30 embryo 20-22hr    15 embryo 22-24hr    17 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    6 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    22 white prepupae 24hr    27 pupae 2d postWPP    25 pupae 3d postWPP    10 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    4 adult male 30day    2 adult female 01day    2 adult female 05day    1 adult female 30day    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    4 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    33 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    117 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    98 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    24 ovary OSC    32 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    4 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    7 wing disc ML-DmD21  (33) wing disc ML-DmD32    1 haltere disc ML-DmD17-c3  (117) eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1  (98) CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    24 ovary OSC  (32) ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    4 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    33 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3  (117) eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    98 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    24 ovary OSC    32 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    4 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    33 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    117 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    98 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    24 ovary OSC    32 ovary OSS    20 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    4 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    33 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    117 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    98 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    24 ovary OSC    32 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    4 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    7 wing disc ML-DmD21  (33) wing disc ML-DmD32    1 haltere disc ML-DmD17-c3  (117) eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1  (98) CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    24 ovary OSC  32 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    4 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    33 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3  117 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    98 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    24 ovary OSC    32 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    4 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    33 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    117 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    98 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    24 ovary OSC    32 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    10 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    2 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    10 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    2 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    10 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    2 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    10 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    2 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    10 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    2 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    10 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    2 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    10 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    2 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    10 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    2 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_11
External Data & Images
Linkouts	BDGP expression data • PC00288 GH13492 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0259244 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG14889-RA;CG11769-RA;CG14888-RA;CG14890-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL4pnr-MD237 CG42342GD3022 lethal | pupal stage, with Scer\GAL4pnr-MD237 CG42342GD3022 viable CG42342c01692 viable, with Scer\GAL4pnr-MD237 CG42342GD8478 CG42342GD15269 Sterility Allele fertile CG42342c01692 Phenotype manifest in Allele
Classical Alleles ( 20 )
For All Classical Alleles Show
Allele of CG42342 Class Mutagen Stocks Known lesion CG42342c01692 piggyBac transposase 2 -- CG42342c00993 1 -- CG42342c03488 1 -- CG42342CB-6489-3 1 -- CG42342e03466 1 -- CG42342e04033 1 -- CG42342f01026 1 -- CG42342f01122 1 -- CG42342f01777 1 -- CG42342f04989 1 -- CG42342MI00081 1 -- CG42342MI00948 1 -- CG42342MI01514 1 -- CG42342MI03361 1 -- CG42342MI05637 1 -- CG42342c00834 0 -- CG42342c01642 0 -- CG42342CPTI000033 piggyBac transposase 0 Yes CG42342e03117 0 -- CG42342e03572 0 --
Alleles Carried on Transgenic Constructs ( 8 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG42342 Class Mutagen Stocks Known lesion CG42342GD3022 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG42342GD15269 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42342GD8478 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42342JF03063 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42342KK111401 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42342KK111891 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42342NIG.11769R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes CG42342NIG.14889R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6270 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{KK111401} NA P{KK111891} NA P{NIG.11769R} NA P{NIG.14889R} NA P{TRiP.JF03063} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}CG42342MI00081 NA Mi{MIC}CG42342MI00948 NA Mi{MIC}CG42342MI01514 NA Mi{MIC}CG42342MI03361 NA Mi{MIC}CG42342MI05637 NA P{RS3}CG42342CB-6489-3 NA PBac{602.P.SVS-1}CG42342CPTI000033 NA PBac{PB}CG42342c00834 NA PBac{PB}CG42342c00993 NA PBac{PB}CG42342c01642 NA PBac{PB}CG42342c01692 NA PBac{PB}CG42342c03488 NA PBac{RB}CG42342e03117 NA PBac{RB}CG42342e03466 NA PBac{RB}CG42342e03572 NA PBac{RB}CG42342e04033 NA PBac{WH}CG42342f01026 NA PBac{WH}CG42342f01122 NA PBac{WH}CG42342f01777 NA PBac{WH}CG42342f04989 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
	There is no information supporting a biological process, cellular component or molecular function term for this gene. (Based on a review of available data on: 2011-03-17)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG42342 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 928290 DroID - A comprehensive database of gene and protein interactions. • FBgn0259244 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 7354466
Orthologs
OrthoDB Orthologs (130) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG666W6Q Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search EOG6V425Q Arthropod inclusive ortholog search EOG6G79G9 Metazoa inclusive ortholog search EOG62C92B
Orthologs in Drosophila Species (EOG666W6Q)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG42342     Drosophila simulans   Dsim\GD19109 Y   Drosophila sechellia   Dsec\GM15166 Y   Drosophila erecta   Dere\GG21654 Y   Drosophila yakuba   Dyak\GE24574 Y   Drosophila ananassae   Dana\GF17055 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA30098 Y   Drosophila willistoni   Dwil\GK11208 Y   Drosophila virilis   Dvir\GJ24392 Y   Drosophila mojavensis   Dmoj\GI22358 Y   Drosophila grimshawi   Dgri\GH20231 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (EOG6V425Q)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB40231   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG017595   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH27227   Atta cephalotes Leafcutter ant  Acep\ACEP19333   Camponotus floridanus Florida carpenter ant  Cflo\CFLO21588   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL16869   Linepithema humile Argentine ant  Lhum\LH17183   Pogonomyrmex barbatus Red harvester ant  Pbar\PB11983   Solenopsis invicta Red fire ant  Sinv\SINV21544   Bombyx mori Silkmoth  Bmor\BGIBMGA002746   Pediculus humanus Human body louse  Phum\PHUM376900   Tribolium castaneum Red flour beetle  Tcas\TC011335
Orthologs in non-Insect Arthropods (EOG6G79G9)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_116763   Ixodes scapularis Deer tick  Isca\ISCW017189
Orthologs in non-Arthropod Metazoa (EOG62C92B)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\col-99 Y Caenorhabditis elegans Nematode  Cele\col-46 Y Caenorhabditis elegans Nematode  Cele\emb-9 Y Caenorhabditis elegans Nematode  Cele\mec-5 Y Caenorhabditis elegans Nematode  Cele\F01G12.5 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_009076gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_003768gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_015708gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_013557gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_025369gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_005187gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_018029gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_022116gn Y Danio rerio Zebrafish  Drer\col5a3b Y Danio rerio Zebrafish  Drer\ENSDARG00000077245 Y Danio rerio Zebrafish  Drer\si:dkey-21p1.3 Y Danio rerio Zebrafish  Drer\ENSDARG00000025320 Y Danio rerio Zebrafish  Drer\ENSDARG00000090644 Y Danio rerio Zebrafish  Drer\si:ch211-160j14.3 Y Danio rerio Zebrafish  Drer\col4a6 Y Danio rerio Zebrafish  Drer\si:ch211-233f10.5 Y Danio rerio Zebrafish  Drer\col27a1a Y Danio rerio Zebrafish  Drer\col4a2 Y Danio rerio Zebrafish  Drer\col4a4 Y Danio rerio Zebrafish  Drer\col11a2 Y Danio rerio Zebrafish  Drer\si:dkey-61l1.4 Y Danio rerio Zebrafish  Drer\col4a3 Y Danio rerio Zebrafish  Drer\col5a3 Y Danio rerio Zebrafish  Drer\col5a1 Y Danio rerio Zebrafish  Drer\si:ch211-196i2.1 Y Danio rerio Zebrafish  Drer\ENSDARG00000069904 Y Danio rerio Zebrafish  Drer\si:dkeyp-44a8.4 Y Danio rerio Zebrafish  Drer\si:ch211-196i2.2 Y Danio rerio Zebrafish  Drer\col5a3a Y Danio rerio Zebrafish  Drer\col4a1 Y Danio rerio Zebrafish  Drer\col5a3a Y Danio rerio Zebrafish  Drer\si:dkey-117n7.4 Y Danio rerio Zebrafish  Drer\col4a5 Y Danio rerio Zebrafish  Drer\col11a1a Y Danio rerio Zebrafish  Drer\col11a1b Y Danio rerio Zebrafish  Drer\ENSDARG00000073699 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000010839 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000020448 Y Xenopus tropicalis Western clawed frog  Xtro\otol1 Y Xenopus tropicalis Western clawed frog  Xtro\col21a1 Y Xenopus tropicalis Western clawed frog  Xtro\col4a5 Y Xenopus tropicalis Western clawed frog  Xtro\col4a2 Y Xenopus tropicalis Western clawed frog  Xtro\col11a2p Y Xenopus tropicalis Western clawed frog  Xtro\col4a1 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000009644 Y Xenopus tropicalis Western clawed frog  Xtro\col27a1 Y Xenopus tropicalis Western clawed frog  Xtro\col4a6 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000011757 Y Xenopus tropicalis Western clawed frog  Xtro\col24a1 Y Xenopus tropicalis Western clawed frog  Xtro\col5a1 Y Gallus gallus Domestic chicken  Ggal\COL21A1 Y Gallus gallus Domestic chicken  Ggal\COL11A1 Y Gallus gallus Domestic chicken  Ggal\COL27A1 Y Gallus gallus Domestic chicken  Ggal\COL4A5 Y Gallus gallus Domestic chicken  Ggal\COL23A1 Y Gallus gallus Domestic chicken  Ggal\COL24A1 Y Gallus gallus Domestic chicken  Ggal\COL4A4 Y Gallus gallus Domestic chicken  Ggal\COL4A3 Y Gallus gallus Domestic chicken  Ggal\COL4A6 Y Gallus gallus Domestic chicken  Ggal\COL5A1 Y Gallus gallus Domestic chicken  Ggal\COL4A2 Y Mus musculus House mouse  Mmus\Col4a5 Y Mus musculus House mouse  Mmus\Col4a2 Y Mus musculus House mouse  Mmus\Col4a6 Y Mus musculus House mouse  Mmus\Col4a1 Y Mus musculus House mouse  Mmus\Col5a3 Y Mus musculus House mouse  Mmus\Col4a4 Y Mus musculus House mouse  Mmus\Col11a1 Y Mus musculus House mouse  Mmus\Col5a1 Y Mus musculus House mouse  Mmus\Col4a3 Y Mus musculus House mouse  Mmus\Col23a1 Y Mus musculus House mouse  Mmus\Col24a1 Y Mus musculus House mouse  Mmus\Col27a1 Y Rattus norvegicus Norway rat  Rnor\Col23a1 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000018856 Y Rattus norvegicus Norway rat  Rnor\Col5a1 Y Rattus norvegicus Norway rat  Rnor\Col4a4 Y Rattus norvegicus Norway rat  Rnor\Col24a1 Y Rattus norvegicus Norway rat  Rnor\Col4a3 Y Rattus norvegicus Norway rat  Rnor\Col11a1 Y Rattus norvegicus Norway rat  Rnor\Col4a5 Y Rattus norvegicus Norway rat  Rnor\Col27a1 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000023972 Y Rattus norvegicus Norway rat  Rnor\Col5a3 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000011256 Y Rattus norvegicus Norway rat  Rnor\Sp9 Y Rattus norvegicus Norway rat  Rnor\Col4a1 Y Homo sapiens Human  Hsap\COL4A6 Y Homo sapiens Human  Hsap\COL4A2 Y Homo sapiens Human  Hsap\COL4A1 Y Homo sapiens Human  Hsap\COL21A1 Y Homo sapiens Human  Hsap\COL4A3 Y Homo sapiens Human  Hsap\COL4A4 Y Homo sapiens Human  Hsap\COL23A1 Y Homo sapiens Human  Hsap\COL11A2 Y Homo sapiens Human  Hsap\COL24A1 Y Homo sapiens Human  Hsap\COL5A1 Y Homo sapiens Human  Hsap\COL11A1 Y Homo sapiens Human  Hsap\COL5A3 Y Homo sapiens Human  Hsap\COL27A1 Y
Human Orthologs (13)
Gene OMIM HGNC Hsap\COL4A6     Hsap\COL4A2     Hsap\COL4A1     Hsap\COL21A1     Hsap\COL4A3     Hsap\COL4A4     Hsap\COL23A1     Hsap\COL11A2     Hsap\COL24A1     Hsap\COL5A1     Hsap\COL11A1     Hsap\COL5A3     Hsap\COL27A1
AAA Orthologs (23) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD19107 Drosophila simulans Dsim\GD19109 Drosophila sechellia Dsec\GM15165 Drosophila sechellia Dsec\GM15166 Drosophila erecta Dere\GG21610 Drosophila erecta Dere\GG21632 Drosophila erecta Dere\GG21643 Drosophila erecta Dere\GG21654 Drosophila yakuba Dyak\GE24571 Drosophila yakuba Dyak\GE24572 Drosophila yakuba Dyak\GE24573 Drosophila yakuba Dyak\GE24574 Drosophila ananassae Dana\GF17055 Drosophila pseudoobscura pseudoobscura Dpse\GA30098 Drosophila willistoni Dwil\GK11208 Drosophila virilis Dvir\GJ24388 Drosophila virilis Dvir\GJ24390 Drosophila virilis Dvir\GJ24391 Drosophila virilis Dvir\GJ24392 Drosophila mojavensis Dmoj\GI22357 Drosophila mojavensis Dmoj\GI22358 Drosophila grimshawi Dgri\GH20208 Drosophila grimshawi Dgri\GH20231
Stocks & Reagents
Stocks Listed in FlyBase ( 23 )
Harvard	- PBac{PB}CG42342c00993 - PBac{PB}CG42342c01692 - PBac{PB}CG42342c03488 - PBac{RB}CG42342e03466 - PBac{RB}CG42342e04033 - PBac{WH}CG42342f01026 - PBac{WH}CG42342f01122 - PBac{WH}CG42342f01777 - PBac{WH}CG42342f04989
VDRC	v102525 P{KK111891}VIE-260B v106004 P{KK111401}VIE-260B v9864 w1118; P{GD3022}v9864
	More stocks available...
Genomic Clones ( 2 )
	BACR01H23 BACR48L13 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 92 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	IP04710 IP07919 LP07855 LP23076
Other clones	IP04510
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH13492 LP03994 RH09113 RH24072 RH24096 RH30594 RH32637 RH45275 RH50081
Other clones	28184 42405 50846 54856 55898 66252 78850 81347 83338 105616 108034 214403.36 281260 DMG4-chr3R.21.022.pred.a EK045357 EK135536 EK166338 EK176834 EK184013 EK206221 EK214753 EK217051 EK230814 EK234061 EK306115 EP07752 EP11428 EP18410 IP04410 IP07619 IP07719 IP07819 RH52905 RP004060083 RP004099686 RP004110231 RP004124080 RP004125280 RP004129330 RP004132854 RP004133257 RP004182050 RP004188838 RP004199949 RP004200970 RP004204247 RP004204951 RP004226215 RP004228389 RP004229370 RP004230318 RP004232245 RP004235374 RP004237569 RP004239260 RP004239762 RP004246438 RP004247588 RP004251965 RP004253283 RP004256122 RP004256168 RP004258030 RP004261310 RP004269561 RP004303930 RP004425455 RP004466246 RP004472244 RP004481902 RP004490202 RP004526199 RP004529949 RP004532954 RP004546302 RP004553340 RP004553567 RP004553877
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0259244 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 7354466
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG11769 CG42243 (FlyBase Genome Annotators, 2008) Source for merge of: CG14888 CG14889 CG14890 (FlyBase Genome Annotators, 2008)
Additional comments	Annotations CG14888, CG14889, and CG14890 merged as CG42243 in release 5.7 of the genome annotation. (FlyBase Genome Annotators, 2008) Annotations CG11769 and CG42243 merged as CG42342 in release 5.9 of the genome annotation. (FlyBase Genome Annotators, 2008)
Other Comments
	RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004) Identified with: LP07855 (BDGP-DGC) <up>FlyBase curator comment: EST subsequently found to be chimeric</up>. (BDGP Project Members, 2000-)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_001144589 NM_001144590 NM_001144591 NM_001144592 NM_001170160 NM_001202305 NM_001202306 NM_001260212 NM_001260213 NM_001260214 NM_001275711 NM_001275712 RefSeq (Proteins) • NP_001138061 NP_001138062 NP_001138063 NP_001138064 NP_001163631 NP_001189234 NP_001189235 NP_001247141 NP_001247142 NP_001247143 NP_001262640 NP_001262641 DDBJ / EMBL / GenBank • AAO39561 ACL83519 ACL83520 ACL83521 ACL83522 ACZ94927 ADV37325 ADV37326 AFH06459 AFH06460 AFH06461 AGB96020 AGB96021 AI135660 AI294475 BT003557 CZ467366 Entrez Gene - A searchable database of RefSeq genes. • 7354466 UniProtKB/Swiss-Prot • B7Z0K8 UniProtKB/TrEMBL • E1JIM8
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Collagen triple helix repeat (IPR008160) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GH13492 PC00288
Linkouts
	BioGRID - A database of protein and genetic interactions • 928290 DroID - A comprehensive database of gene and protein interactions. • FBgn0259244 DRSC - Results from RNAi screens. • FBgn0259244 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0259244 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG14889-RA;CG11769-RA;CG14888-RA;CG14890-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0259244 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 7354466 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 7354466 modMine - Data generated by the modENCODE project. • FBgn0259244
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	CG11769 (Keleman et al., 2009.8.5, Japanese National Institute of Genetics, 2012.5.21) CG14888 (Quijano et al., 2008) CG14889 (Toledano-Katchalski et al., 2007, Perkins et al., 2009, Quijano et al., 2008, Japanese National Institute of Genetics, 2012.5.21) CG14890   CG42243 (FlyBase Genome Annotators, 2008, Keleman et al., 2009.8.5) CG42342 (FlyBase Genome Annotators, 2008, Chatterjee et al., 2011, Kaushik et al., 2012)
Name Synonym	CG11769   CG14888   CG14889   CG14890   CG42243 (FlyBase Genome Annotators, 2008)
Secondary FlyBase IDs
	FBgn0038441 FBgn0038442 FBgn0038443 FBgn0038444 FBgn0250909
References ( 36 )
Generate a list of	All references relating to this gene ( 36 )
List References by type	Research paper  ( 6 ) Supplementary material  ( 4 ) Review  ( 1 ) Personal communication to FlyBase  ( 16 ) FlyBase analysis  ( 6 ) Stock list  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 3 )
	Junion et al., 2012, Cell 148(3): 473--486 A transcription factor collective defines cardiac cell fate and reflects lineage history. [FBrf0217404] Weber et al., 2012, PLoS ONE 7(4): e34745 Genome-Wide Association Analysis of Oxidative Stress Resistance in Drosophila melanogaster. [FBrf0218073] Chatterjee et al., 2011, Development 138(6): 1099--1109 The female-specific Doublesex isoform regulates pleiotropic transcription factors to pattern genital development in Drosophila. [FBrf0213054] Show all research papers ...
Recent reviews ( 1 )
	Kaushik et al., 2012, J. Cell. Mol. Med. 16(8): 1656--1662 Measuring passive myocardial stiffness in Drosophila melanogaster to investigate diastolic dysfunction. [FBrf0219008] Show all reviews ...