Gene Dmel\CG42368

FlyGene Wiki Help Close All Open All

General Information

Symbol

Dmel\CG42368

Species

D. melanogaster

Name

Annotation symbol

CG42368

Feature type

protein_coding_gene

FlyBase ID

FBgn0259714

Gene Model Status

Current

Stock availability

7 publicly available

Also Known As

CG13981, CG9511, CG33295

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

26C4-26D1

Sequence location

2L:6,377,771..6,411,326 [-]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG42368 (FBgn0259714). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 9 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has one annotated transcript and one annotated polypeptide. Protein features are: Immunoglobulin I-set; Immunoglobulin subtype 2; Immunoglobulin-like domain; Immunoglobulin-like fold. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: larval fat body. Gene sequence location is 2L:6377767..6411306.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

Update Feed

Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.

FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

26C4-26D1

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG42368 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.51

Low-frequency RNA-Seq exon junction(s) not annotated.

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG42368-RA

FBtr0299967

NM_001144327

3150

467

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG42368-PA

FBpp0289244

51.1

467

7.94

NP_001137799

ACL83005

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Immunoglobulin subtype 2 (IPR003598)

Immunoglobulin I-set (IPR013098)

Immunoglobulin-like fold (IPR013783)

Immunoglobulin-like domain (IPR007110)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

A4IJ70

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: larval fat body.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		9
central nervous system, pupae P8		19
head, virgin 1-day female		21
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		12
head, mated 4-day female		7
head, mated 20-day female		6
head, mated 1-day male		22
head, mated 4-day male		12
head, mated 20-day male		10
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		16
fat body, white prepupae		27
fat body, pupae P8		31
carcass, larvae L3 wandering		2
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		3
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		9
central nervous system, pupae P8		19
head, virgin 1-day female		21
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		12
head, mated 4-day female		7
head, mated 20-day female		6
head, mated 1-day male		22
head, mated 4-day male		12
head, mated 20-day male		10
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		16
fat body, white prepupae		(27)
fat body, pupae P8		(31)
carcass, larvae L3 wandering		2
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		3
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		9
central nervous system, pupae P8		19
head, virgin 1-day female		21
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		12
head, mated 4-day female		7
head, mated 20-day female		6
head, mated 1-day male		22
head, mated 4-day male		12
head, mated 20-day male		10
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		16
fat body, white prepupae		27
fat body, pupae P8		31
carcass, larvae L3 wandering		2
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		3
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		9
central nervous system, pupae P8		19
head, virgin 1-day female		21
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		12
head, mated 4-day female		7
head, mated 20-day female		6
head, mated 1-day male		22
head, mated 4-day male		12
head, mated 20-day male		10
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		16
fat body, white prepupae		27
fat body, pupae P8		31
carcass, larvae L3 wandering		2
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		3
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		0
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		9
central nervous system, pupae P8		19
head, virgin 1-day female		21
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		12
head, mated 4-day female		7
head, mated 20-day female		6
head, mated 1-day male		22
head, mated 4-day male		12
head, mated 20-day male		10
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		16
fat body, white prepupae		27
fat body, pupae P8		31
carcass, larvae L3 wandering		2
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		3
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		9
central nervous system, pupae P8		19
head, virgin 1-day female		21
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		12
head, mated 4-day female		7
head, mated 20-day female		6
head, mated 1-day male		22
head, mated 4-day male		12
head, mated 20-day male		10
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		16
fat body, white prepupae		27
fat body, pupae P8		31
carcass, larvae L3 wandering		2
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		3
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		9
central nervous system, pupae P8		19
head, virgin 1-day female		21
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		12
head, mated 4-day female		7
head, mated 20-day female		6
head, mated 1-day male		22
head, mated 4-day male		12
head, mated 20-day male		10
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		16
fat body, white prepupae		27
fat body, pupae P8		31
carcass, larvae L3 wandering		2
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		3
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		9
central nervous system, pupae P8		19
head, virgin 1-day female		21
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		12
head, mated 4-day female		7
head, mated 20-day female		6
head, mated 1-day male		22
head, mated 4-day male		12
head, mated 20-day male		10
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		16
fat body, white prepupae		27
fat body, pupae P8		31
carcass, larvae L3 wandering		2
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		3
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed at stages throughout the pupal period.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		1
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		3
embryo 12-14hr		3
embryo 14-16hr		3
embryo 16-18hr		4
embryo 18-20hr		3
embryo 20-22hr		2
embryo 22-24hr		3
larva L1		2
larva L2		1
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		3
larva L3 puffstage 7-9		4
white prepupae new		4
white prepupae 12hr		10
white prepupae 24hr		10
pupae 2d postWPP		11
pupae 3d postWPP		7
pupae 4d postWPP		5
adult male 01day		4
adult male 05day		3
adult male 30day		3
adult female 01day		3
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		1
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		3
embryo 12-14hr		3
embryo 14-16hr		3
embryo 16-18hr		4
embryo 18-20hr		3
embryo 20-22hr		2
embryo 22-24hr		3
larva L1		2
larva L2		1
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		3
larva L3 puffstage 7-9		4
white prepupae new		4
white prepupae 12hr		10
white prepupae 24hr		10
pupae 2d postWPP		11
pupae 3d postWPP		7
pupae 4d postWPP		5
adult male 01day		4
adult male 05day		3
adult male 30day		3
adult female 01day		3
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		1
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		3
embryo 12-14hr		3
embryo 14-16hr		3
embryo 16-18hr		4
embryo 18-20hr		3
embryo 20-22hr		2
embryo 22-24hr		3
larva L1		2
larva L2		1
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		3
larva L3 puffstage 7-9		4
white prepupae new		4
white prepupae 12hr		10
white prepupae 24hr		10
pupae 2d postWPP		11
pupae 3d postWPP		7
pupae 4d postWPP		5
adult male 01day		4
adult male 05day		3
adult male 30day		3
adult female 01day		3
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		1
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		3
embryo 12-14hr		3
embryo 14-16hr		3
embryo 16-18hr		4
embryo 18-20hr		3
embryo 20-22hr		2
embryo 22-24hr		3
larva L1		2
larva L2		1
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		3
larva L3 puffstage 7-9		4
white prepupae new		4
white prepupae 12hr		10
white prepupae 24hr		10
pupae 2d postWPP		11
pupae 3d postWPP		7
pupae 4d postWPP		5
adult male 01day		4
adult male 05day		3
adult male 30day		3
adult female 01day		3
adult female 05day		1
adult female 30day		1
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		1
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		3
embryo 12-14hr		3
embryo 14-16hr		3
embryo 16-18hr		4
embryo 18-20hr		3
embryo 20-22hr		2
embryo 22-24hr		3
larva L1		2
larva L2		1
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		3
larva L3 puffstage 7-9		4
white prepupae new		4
white prepupae 12hr		10
white prepupae 24hr		10
pupae 2d postWPP		11
pupae 3d postWPP		7
pupae 4d postWPP		5
adult male 01day		4
adult male 05day		3
adult male 30day		3
adult female 01day		3
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		1
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		3
embryo 12-14hr		3
embryo 14-16hr		3
embryo 16-18hr		4
embryo 18-20hr		3
embryo 20-22hr		2
embryo 22-24hr		3
larva L1		2
larva L2		1
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		3
larva L3 puffstage 7-9		4
white prepupae new		4
white prepupae 12hr		10
white prepupae 24hr		10
pupae 2d postWPP		11
pupae 3d postWPP		7
pupae 4d postWPP		5
adult male 01day		4
adult male 05day		3
adult male 30day		3
adult female 01day		3
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		1
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		3
embryo 12-14hr		3
embryo 14-16hr		3
embryo 16-18hr		4
embryo 18-20hr		3
embryo 20-22hr		2
embryo 22-24hr		3
larva L1		2
larva L2		1
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		3
larva L3 puffstage 7-9		4
white prepupae new		4
white prepupae 12hr		10
white prepupae 24hr		10
pupae 2d postWPP		11
pupae 3d postWPP		7
pupae 4d postWPP		5
adult male 01day		4
adult male 05day		3
adult male 30day		3
adult female 01day		3
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		1
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		3
embryo 12-14hr		3
embryo 14-16hr		3
embryo 16-18hr		4
embryo 18-20hr		3
embryo 20-22hr		2
embryo 22-24hr		3
larva L1		2
larva L2		1
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		3
larva L3 puffstage 7-9		4
white prepupae new		4
white prepupae 12hr		10
white prepupae 24hr		10
pupae 2d postWPP		11
pupae 3d postWPP		7
pupae 4d postWPP		5
adult male 01day		4
adult male 05day		3
adult male 30day		3
adult female 01day		3
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		2
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		1
wing disc ML-DmD8		5
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		4
wing disc ML-DmD21		7
wing disc ML-DmD32		36
haltere disc ML-DmD17-c3		31
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		1
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		2
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		3
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		2
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		1
wing disc ML-DmD8		5
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		4
wing disc ML-DmD21		7
wing disc ML-DmD32		(36)
haltere disc ML-DmD17-c3		(31)
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		1
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		2
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		3
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		2
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		1
wing disc ML-DmD8		5
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		4
wing disc ML-DmD21		7
wing disc ML-DmD32		36
haltere disc ML-DmD17-c3		31
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		1
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		2
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		3
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		2
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		1
wing disc ML-DmD8		5
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		4
wing disc ML-DmD21		7
wing disc ML-DmD32		36
haltere disc ML-DmD17-c3		31
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		1
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		2
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		3
ovary OSS		0
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		2
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		1
wing disc ML-DmD8		5
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		4
wing disc ML-DmD21		7
wing disc ML-DmD32		36
haltere disc ML-DmD17-c3		31
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		1
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		2
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		3
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		2
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		1
wing disc ML-DmD8		5
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		4
wing disc ML-DmD21		7
wing disc ML-DmD32		(36)
haltere disc ML-DmD17-c3		31
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		1
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		2
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		3
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		2
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		1
wing disc ML-DmD8		5
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		4
wing disc ML-DmD21		7
wing disc ML-DmD32		36
haltere disc ML-DmD17-c3		31
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		1
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		2
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		3
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		2
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		1
wing disc ML-DmD8		5
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		4
wing disc ML-DmD21		7
wing disc ML-DmD32		36
haltere disc ML-DmD17-c3		31
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		1
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		2
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		3
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		2
heat shock, 4-day adult		1
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		1
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		2
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		1
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		1
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		4
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		1
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		2
heat shock, 4-day adult		1
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		1
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		2
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		1
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		1
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		4
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		1
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		2
heat shock, 4-day adult		1
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		1
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		2
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		1
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		1
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		4
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		1
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		2
heat shock, 4-day adult		1
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		1
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		2
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		1
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		1
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		4
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		1
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		2
heat shock, 4-day adult		1
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		1
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		2
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		1
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		1
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		4
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		1
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		2
heat shock, 4-day adult		1
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		1
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		2
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		1
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		1
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		4
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		1
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		2
heat shock, 4-day adult		1
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		1
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		2
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		1
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		1
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		4
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		1
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		2
heat shock, 4-day adult		1
Cadmium 50 mM 6 hrs, larvae L3		1
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		1
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		7
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		2
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		1
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		1
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		4
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		1
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010, Graveley et al., 2011)

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0259714

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG13981-RA;Stencil:2L:6383550:6381615:GENSCAN;CG9508-RA;CG9511-RA;CG33295-RA

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable, with Scer\GAL4^pnr-MD237

CG42368^GD13552

Other Phenotypes

Allele

visible, with Scer\GAL4^pnr-MD237

CG42368^GD13552

Phenotype manifest in

Allele

mesothoracic tergum, with Scer\GAL4^pnr-MD237

CG42368^GD13552

Classical Alleles ( 5 )

For All Classical Alleles Show

Allele of CG42368	Stocks	Known lesion
CG42368⁰⁴	1	--
CG42368^f04139	1	--
CG42368^MB08158	1	--
CG42368^d11564	0	--
CG42368^NP4691	0	--

Alleles Carried on Transgenic Constructs ( 4 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG42368	Mutagen	Stocks	Known lesion
CG42368^GD13552	in vitro construct - RNAi in vitro construct - regulatory fusion	2	Yes
CG42368^HMS01718	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG42368^KK111588	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG42368^NIG.13981R	in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{KK111588}

P{NIG.13981R}

P{TRiP.HMS01718}

Insertions

Type of insertions

Name

Expression data

insertion of enhancer trap binary system

Mi{ET1}CG42368^MB08158

P{GawB}CG42368^NP4691

miscellaneous insertions

P{UAST-YFP.Rab40.H25N}CG42368⁰⁴

PBac{WH}CG42368^f04139

insertion of mobile activating element

P{XP}CG42368^d11564

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

There is no information supporting a biological process, cellular component or molecular function term for this gene.

(Based on a review of available data on: 2009-02-19)

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

nuclear_gene

(FlyBase Genome Annotators, 2008)

protein_coding_gene

(FlyBase Genome Annotators, 2008)

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG42368 allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0259714

Orthologs

OrthoDB Orthologs (47) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG6B5PR2

Dipteran inclusive ortholog search

EOG6QRHCF

Insect inclusive ortholog search

EOG63JB15

Arthropod inclusive ortholog search

EOG6V6WZ2

Metazoa inclusive ortholog search

EOG6V4G25

Orthologs in Drosophila Species (EOG6B5PR2)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila erecta

Drosophila yakuba

Drosophila virilis

Drosophila grimshawi

Orthologs in non-Drosophila Dipterans (EOG6QRHCF)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL000576

Anopheles gambiae

Malaria mosquito

Agam\AGAP009965

Anopheles gambiae

Malaria mosquito

Agam\AGAP009964

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ014494

Orthologs in non-Dipteran Insects (EOG63JB15)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Apis mellifera

Western honey bee

Amel\GB41562

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG008148

Acromyrmex echinatior

Panamanian leafcutter ant

Aech\AECH11640

Atta cephalotes

Leafcutter ant

Acep\ACEP24026

Camponotus floridanus

Florida carpenter ant

Cflo\CFLO19128

Harpegnathos saltator

Jerdons jumping ant

Hsal\HSAL13346

Linepithema humile

Argentine ant

Lhum\LH25028

Pogonomyrmex barbatus

Red harvester ant

Pbar\PB17849

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI066930

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI084924

Bombyx mori

Silkmoth

Bmor\BGIBMGA003732

Pediculus humanus

Human body louse

Phum\PHUM217590

Tribolium castaneum

Red flour beetle

Tcas\TC014162

Orthologs in non-Insect Arthropods (EOG6V6WZ2)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Daphnia pulex

Water flea

Dpux\JGI_V11_335708

Daphnia pulex

Water flea

Dpux\JGI_V11_65516

Daphnia pulex

Water flea

Dpux\JGI_V11_311160

Daphnia pulex

Water flea

Dpux\JGI_V11_326104

Daphnia pulex

Water flea

Dpux\alpha-Est10

Daphnia pulex

Water flea

Dpux\JGI_V11_323113

Daphnia pulex

Water flea

Dpux\JGI_V11_327264

Daphnia pulex

Water flea

Dpux\Pdlim7

Daphnia pulex

Water flea

Dpux\CR2

Daphnia pulex

Water flea

Dpux\JGI_V11_54679

Ixodes scapularis

Deer tick

Isca\ISCW023683

Ixodes scapularis

Deer tick

Isca\ISCW009561

Ixodes scapularis

Deer tick

Isca\ISCW014380

Ixodes scapularis

Deer tick

Isca\ISCW023663

Ixodes scapularis

Deer tick

Isca\ISCW023682

Orthologs in non-Arthropod Metazoa (EOG6V4G25)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Caenorhabditis elegans

Nematode

Cele\rig-5

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_008387gn

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_015705gn

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_027417gn

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_014709gn

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_013493gn

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_021031gn

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_005899gn

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_006616gn

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_002826gn

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 7 )

Bloomington

25587

w¹¹¹⁸; Mi{ET1}CG42368^MB08158

38936

y¹ sc^* v¹; P{TRiP.HMS01718}attP40

9829

y¹ w^*; P{UAST-YFP.Rab40.H25N}CG42368⁰⁴

Harvard

PBac{WH}CG42368^f04139

VDRC

v103497

P{KK111588}VIE-260B

v23489

w¹¹¹⁸; P{GD13552}v23489

v23490

w¹¹¹⁸; P{GD13552}v23490

Genomic Clones ( 2 )

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 16 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

IP05285

Other clones

IP17937

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0259714

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

7354433

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Source for split of: CG13981

(FlyBase Genome Annotators, 2008)

Source for split of: CG33295

(FlyBase Genome Annotators, 2008)

Source for split of: CG9508

(FlyBase Genome Annotators, 2008)

Source for split of: CG9511

(FlyBase Genome Annotators, 2008)

Annotations CG13981, CG33295, CG9508, and CG9511 split into CG42368, CG42369 and CG42370 in release 5.10 of the genome annotation.

(FlyBase Genome Annotators, 2008)

Other Comments

New annotation (CG33295) in release 3.2 of the genome annotation.

(FlyBase Genome Annotators, 2004)

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_001144327

RefSeq (Proteins)

•

NP_001137799

DDBJ / EMBL / GenBank

•

Entrez Gene - A searchable database of RefSeq genes.

•

7354433

UniProtKB/TrEMBL

•

A4IJ70

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Immunoglobulin subtype 2 (IPR003598)

Immunoglobulin I-set (IPR013098)

Immunoglobulin-like fold (IPR013783)

Immunoglobulin-like domain (IPR007110)

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0259714

DRSC - Results from RNAi screens.

•

FBgn0259714

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0259714

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG13981-RA;Stencil:2L:6383550:6381615:GENSCAN;CG9508-RA;CG9511-RA;CG33295-RA

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0259714

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

7354433

modMine - Data generated by the modENCODE project.

•

FBgn0259714

Synonyms & Secondary IDs ( 5 )

Reported As

Symbol Synonym

CG9508

(FlyBase Genome Annotators, 2008)

CG9511

(FlyBase Genome Annotators, 2008, Hsu et al., 2008)

CG13981

(FlyBase Genome Annotators, 2008, Ryder, 2004.4.26, Stein et al., 2002, Mikhaylova et al., 2006, Dickson et al., 2007.7.18, Keleman et al., 2009.8.5)

CG33295

(FlyBase Genome Annotators, 2008, FlyBase Genome Annotators, 2004)

CG42368

(Japanese National Institute of Genetics, 2012.5.21, Ni et al., 2010.12.1)

Name Synonym

Secondary FlyBase IDs

FBan0009511
FBgn0031807
FBgn0031809
FBgn0031810
FBgn0053295

References ( 21 )

Generate a list of

All references relating to this gene ( 21 )

List References by type

Recent research papers ( 2 )

Weber et al., 2012, PLoS ONE 7(4): e34745: Genome-Wide Association Analysis of Oxidative Stress Resistance in Drosophila melanogaster. [FBrf0218073]
Baycin-Hizal et al., 2011, J. Proteome Res. 10(6): 2777--2784: GlycoFly: A Database of Drosophila N-linked Glycoproteins Identified Using SPEG-MS Techniques. [FBrf0213834]

Show all research papers ...