A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\pds5

General Information
SymbolDmel\pds5SpeciesD. melanogaster
NameAnnotation symbolCG17509
Feature typeprotein_coding_geneFlyBase IDFBgn0260012
Gene Model StatusCurrent Stock availability 8 publicly available
Also Known AsdPds5
Genomic Location
Chromosome (arm)2RRecombination map
Cytogenetic map48D7-48D6Sequence location2R:7,915,484..7,921,230 [+]

Genomic Maps

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modENCODE GBrowse
detailed view
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Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol Dmel\pds5 (CG17509, FBgn0260012). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: binding. There is experimental evidence that it is involved in the biological process: chromosome segregation; sister chromatid cohesion; karyosome formation. 15 alleles are reported. The phenotypes of these alleles are annotated with: mitotic cohesin complex; salivary gland; trichogen cell; polytene chromosome; condensed chromosome; imaginal disc; embryonic/larval brain. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Armadillo-like helical; Armadillo-type fold. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1623138_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of pds5. Gene sequence location is 2R:7915484..7921230.

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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01
Sequence features
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
48D7-48D6  
Limits computationally determined from genome sequence between P{lacW}l(2)k06612k06612 and P{lacW}jebk05644; Left limit from in situ hybridisation (FBrf0067338) Right limit from in situ hybridisation (FBrf0067338)  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
48D5-48D6  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\pds5 for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0088024 FBtr0088025 FBtr0088026 FBtr0087974 FBtr0306062 FBtr0087975 FBpp0087133 FBpp0087132 FBpp0087131 FBpp0087082 FBpp0297204 FBpp0087083 FBti0076962 FBti0043811 FBti0047974 FBti0125120_2 FBti0125120_1 FBti0051327 FBti0021931 FBti0039333 FBti0075102 FBti0114863 FBti0034280
Comments on Gene Model
DGC clone GH12788 appears problematic: incomplete CDS
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0087974
  4677
  1218
FBtr0306062
 
  4935
  1218
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0087082  
138.9  
1218  
7.68  
FBpp0297204  
138.9  
1218  
7.68  
 
 
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view Mppe-RA Mppe-RB Mppe-RC pds5-RA pds5-RB CG8321-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0260012


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0260012
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, in adult female stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0260012 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 3556
embryo 02-04hr
 
 2206
embryo 04-06hr
 
 2245
embryo 06-08hr
 
 1766
embryo 08-10hr
 
 1442
embryo 10-12hr
 
 998
embryo 12-14hr
 
 887
embryo 14-16hr
 
 618
embryo 16-18hr
 
 554
embryo 18-20hr
 
 508
embryo 20-22hr
 
 679
embryo 22-24hr
 
 838
larva L1
 
 797
larva L2
 
 661
larva L3 12hr old
 
 553
larva L3 puffstage 1-2
 
 531
larva L3 puffstage 3-6
 
 854
larva L3 puffstage 7-9
 
 1050
white prepupae new
 
 1057
white prepupae 12hr
 
 1118
white prepupae 24hr
 
 1202
pupae 2d postWPP
 
 800
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 476
adult male 01day
 
 541
adult male 05day
 
 600
adult male 30day
 
 570
adult female 01day
 
 1158
adult female 05day
 
 2459
adult female 30day
 
 2374
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3556)
embryo 02-04hr
 (2206)
embryo 04-06hr
 (2245)
embryo 06-08hr
 (1766)
embryo 08-10hr
 (1442)
embryo 10-12hr
 (998)
embryo 12-14hr
 (887)
embryo 14-16hr
 (618)
embryo 16-18hr
 (554)
embryo 18-20hr
 (508)
embryo 20-22hr
 (679)
embryo 22-24hr
 (838)
larva L1
 (797)
larva L2
 (661)
larva L3 12hr old
 (553)
larva L3 puffstage 1-2
 (531)
larva L3 puffstage 3-6
 (854)
larva L3 puffstage 7-9
 (1050)
white prepupae new
 (1057)
white prepupae 12hr
 (1118)
white prepupae 24hr
 (1202)
pupae 2d postWPP
 (800)
pupae 3d postWPP
 (502)
pupae 4d postWPP
 (476)
adult male 01day
 (541)
adult male 05day
 (600)
adult male 30day
 (570)
adult female 01day
 (1158)
adult female 05day
 (2459)
adult female 30day
 (2374)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3556)
embryo 02-04hr
 (2206)
embryo 04-06hr
 (2245)
embryo 06-08hr
 (1766)
embryo 08-10hr
 1442
embryo 10-12hr
 
 998
embryo 12-14hr
 
 887
embryo 14-16hr
 
 618
embryo 16-18hr
 
 554
embryo 18-20hr
 
 508
embryo 20-22hr
 
 679
embryo 22-24hr
 
 838
larva L1
 
 797
larva L2
 
 661
larva L3 12hr old
 
 553
larva L3 puffstage 1-2
 
 531
larva L3 puffstage 3-6
 
 854
larva L3 puffstage 7-9
 
 1050
white prepupae new
 
 1057
white prepupae 12hr
 
 1118
white prepupae 24hr
 
 1202
pupae 2d postWPP
 
 800
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 476
adult male 01day
 
 541
adult male 05day
 
 600
adult male 30day
 
 570
adult female 01day
 
 1158
adult female 05day
 (2459)
adult female 30day
 (2374)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3556
embryo 02-04hr
 
 2206
embryo 04-06hr
 
 2245
embryo 06-08hr
 
 1766
embryo 08-10hr
 
 1442
embryo 10-12hr
 
 998
embryo 12-14hr
 
 887
embryo 14-16hr
 
 618
embryo 16-18hr
 
 554
embryo 18-20hr
 
 508
embryo 20-22hr
 
 679
embryo 22-24hr
 
 838
larva L1
 
 797
larva L2
 
 661
larva L3 12hr old
 
 553
larva L3 puffstage 1-2
 
 531
larva L3 puffstage 3-6
 
 854
larva L3 puffstage 7-9
 
 1050
white prepupae new
 
 1057
white prepupae 12hr
 
 1118
white prepupae 24hr
 
 1202
pupae 2d postWPP
 
 800
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 476
adult male 01day
 
 541
adult male 05day
 
 600
adult male 30day
 
 570
adult female 01day
 
 1158
adult female 05day
 
 2459
adult female 30day
 
 2374
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3556
embryo 02-04hr
 
 2206
embryo 04-06hr
 
 2245
embryo 06-08hr
 
 1766
embryo 08-10hr
 
 1442
embryo 10-12hr
 
 998
embryo 12-14hr
 
 887
embryo 14-16hr
 
 618
embryo 16-18hr
 
 554
embryo 18-20hr
 
 508
embryo 20-22hr
 
 679
embryo 22-24hr
 
 838
larva L1
 
 797
larva L2
 
 661
larva L3 12hr old
 
 553
larva L3 puffstage 1-2
 
 531
larva L3 puffstage 3-6
 
 854
larva L3 puffstage 7-9
 
 1050
white prepupae new
 
 1057
white prepupae 12hr
 
 1118
white prepupae 24hr
 
 1202
pupae 2d postWPP
 
 800
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 476
adult male 01day
 
 541
adult male 05day
 
 600
adult male 30day
 
 570
adult female 01day
 
 1158
adult female 05day
 
 2459
adult female 30day
 
 2374
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0260012 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 3556
embryo 02-04hr
 
 2206
embryo 04-06hr
 
 2245
embryo 06-08hr
 
 1766
embryo 08-10hr
 
 1442
embryo 10-12hr
 
 998
embryo 12-14hr
 
 887
embryo 14-16hr
 
 618
embryo 16-18hr
 
 554
embryo 18-20hr
 
 508
embryo 20-22hr
 
 679
embryo 22-24hr
 
 838
larva L1
 
 797
larva L2
 
 661
larva L3 12hr old
 
 553
larva L3 puffstage 1-2
 
 531
larva L3 puffstage 3-6
 
 854
larva L3 puffstage 7-9
 
 1050
white prepupae new
 
 1057
white prepupae 12hr
 
 1118
white prepupae 24hr
 
 1202
pupae 2d postWPP
 
 800
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 476
adult male 01day
 
 541
adult male 05day
 
 600
adult male 30day
 
 570
adult female 01day
 
 1158
adult female 05day
 
 2459
adult female 30day
 
 2374
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3556)
embryo 02-04hr
 (2206)
embryo 04-06hr
 (2245)
embryo 06-08hr
 (1766)
embryo 08-10hr
 (1442)
embryo 10-12hr
 (998)
embryo 12-14hr
 (887)
embryo 14-16hr
 (618)
embryo 16-18hr
 (554)
embryo 18-20hr
 (508)
embryo 20-22hr
 (679)
embryo 22-24hr
 (838)
larva L1
 (797)
larva L2
 (661)
larva L3 12hr old
 (553)
larva L3 puffstage 1-2
 (531)
larva L3 puffstage 3-6
 (854)
larva L3 puffstage 7-9
 (1050)
white prepupae new
 (1057)
white prepupae 12hr
 (1118)
white prepupae 24hr
 (1202)
pupae 2d postWPP
 (800)
pupae 3d postWPP
 (502)
pupae 4d postWPP
 (476)
adult male 01day
 (541)
adult male 05day
 (600)
adult male 30day
 (570)
adult female 01day
 (1158)
adult female 05day
 (2459)
adult female 30day
 (2374)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3556)
embryo 02-04hr
 2206
embryo 04-06hr
 2245
embryo 06-08hr
 1766
embryo 08-10hr
 1442
embryo 10-12hr
 
 998
embryo 12-14hr
 
 887
embryo 14-16hr
 
 618
embryo 16-18hr
 
 554
embryo 18-20hr
 
 508
embryo 20-22hr
 
 679
embryo 22-24hr
 
 838
larva L1
 
 797
larva L2
 
 661
larva L3 12hr old
 
 553
larva L3 puffstage 1-2
 
 531
larva L3 puffstage 3-6
 
 854
larva L3 puffstage 7-9
 
 1050
white prepupae new
 
 1057
white prepupae 12hr
 
 1118
white prepupae 24hr
 
 1202
pupae 2d postWPP
 
 800
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 476
adult male 01day
 
 541
adult male 05day
 
 600
adult male 30day
 
 570
adult female 01day
 
 1158
adult female 05day
 2459
adult female 30day
 2374
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3556
embryo 02-04hr
 
 2206
embryo 04-06hr
 
 2245
embryo 06-08hr
 
 1766
embryo 08-10hr
 
 1442
embryo 10-12hr
 
 998
embryo 12-14hr
 
 887
embryo 14-16hr
 
 618
embryo 16-18hr
 
 554
embryo 18-20hr
 
 508
embryo 20-22hr
 
 679
embryo 22-24hr
 
 838
larva L1
 
 797
larva L2
 
 661
larva L3 12hr old
 
 553
larva L3 puffstage 1-2
 
 531
larva L3 puffstage 3-6
 
 854
larva L3 puffstage 7-9
 
 1050
white prepupae new
 
 1057
white prepupae 12hr
 
 1118
white prepupae 24hr
 
 1202
pupae 2d postWPP
 
 800
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 476
adult male 01day
 
 541
adult male 05day
 
 600
adult male 30day
 
 570
adult female 01day
 
 1158
adult female 05day
 
 2459
adult female 30day
 
 2374
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3556
embryo 02-04hr
 
 2206
embryo 04-06hr
 
 2245
embryo 06-08hr
 
 1766
embryo 08-10hr
 
 1442
embryo 10-12hr
 
 998
embryo 12-14hr
 
 887
embryo 14-16hr
 
 618
embryo 16-18hr
 
 554
embryo 18-20hr
 
 508
embryo 20-22hr
 
 679
embryo 22-24hr
 
 838
larva L1
 
 797
larva L2
 
 661
larva L3 12hr old
 
 553
larva L3 puffstage 1-2
 
 531
larva L3 puffstage 3-6
 
 854
larva L3 puffstage 7-9
 
 1050
white prepupae new
 
 1057
white prepupae 12hr
 
 1118
white prepupae 24hr
 
 1202
pupae 2d postWPP
 
 800
pupae 3d postWPP
 
 502
pupae 4d postWPP
 
 476
adult male 01day
 
 541
adult male 05day
 
 600
adult male 30day
 
 570
adult female 01day
 
 1158
adult female 05day
 
 2459
adult female 30day
 
 2374
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0260012


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0260012
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland, larval carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0260012 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 344.425
Larval Midgut
 
 95.8
Larval Hindgut
 
 138.4
Larval Malpighian Tubules
 
 117.2
Larval Fat Body
 
 101.7
Larval Salivary Gland
 
 140.3
Larval Trachea
 
 109.35
Larval Carcass
 
 106.85
Adult Head
 
 89.9
Adult Eye
 
 67.025
Adult Brain
 
 199.3
Adult Thoracic-Abdominal Ganglion
 
 169.4
Adult Crop
 
 156.5
Adult Midgut
 
 89.9
Adult Hindgut
 
 102.5
Adult Malpighian Tubules
 
 66.4
Adult Fat Body
 
 174
Adult Salivary Gland
 
 111.9
Adult Heart
 
 100.7
Adult VirginFemale Spermatheca
 
 176.9
Adult InseminatedFemale Spermatheca
 
 208.4
Adult Ovary
 
 535
Adult Testis
 
 48.8
Adult Male Accessory Gland
 
 194
Adult Carcass
 
 91.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 344.425
Larval Midgut
 
 95.8
Larval Hindgut
 
 138.4
Larval Malpighian Tubules
 
 117.2
Larval Fat Body
 
 101.7
Larval Salivary Gland
 
 140.3
Larval Trachea
 
 109.35
Larval Carcass
 
 106.85
Adult Head
 
 89.9
Adult Eye
 
 67.025
Adult Brain
 
 199.3
Adult Thoracic-Abdominal Ganglion
 
 169.4
Adult Crop
 
 156.5
Adult Midgut
 
 89.9
Adult Hindgut
 
 102.5
Adult Malpighian Tubules
 
 66.4
Adult Fat Body
 
 174
Adult Salivary Gland
 
 111.9
Adult Heart
 
 100.7
Adult VirginFemale Spermatheca
 
 176.9
Adult InseminatedFemale Spermatheca
 
 208.4
Adult Ovary
 535
Adult Testis
 
 48.8
Adult Male Accessory Gland
 
 194
Adult Carcass
 
 91.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 344.425
Larval Midgut
 
 95.8
Larval Hindgut
 
 138.4
Larval Malpighian Tubules
 
 117.2
Larval Fat Body
 
 101.7
Larval Salivary Gland
 
 140.3
Larval Trachea
 
 109.35
Larval Carcass
 
 106.85
Adult Head
 
 89.9
Adult Eye
 
 67.025
Adult Brain
 
 199.3
Adult Thoracic-Abdominal Ganglion
 
 169.4
Adult Crop
 
 156.5
Adult Midgut
 
 89.9
Adult Hindgut
 
 102.5
Adult Malpighian Tubules
 
 66.4
Adult Fat Body
 
 174
Adult Salivary Gland
 
 111.9
Adult Heart
 
 100.7
Adult VirginFemale Spermatheca
 
 176.9
Adult InseminatedFemale Spermatheca
 
 208.4
Adult Ovary
 
 535
Adult Testis
 
 48.8
Adult Male Accessory Gland
 
 194
Adult Carcass
 
 91.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 344.425
Larval Midgut
 
 95.8
Larval Hindgut
 
 138.4
Larval Malpighian Tubules
 
 117.2
Larval Fat Body
 
 101.7
Larval Salivary Gland
 
 140.3
Larval Trachea
 
 109.35
Larval Carcass
 
 106.85
Adult Head
 
 89.9
Adult Eye
 
 67.025
Adult Brain
 
 199.3
Adult Thoracic-Abdominal Ganglion
 
 169.4
Adult Crop
 
 156.5
Adult Midgut
 
 89.9
Adult Hindgut
 
 102.5
Adult Malpighian Tubules
 
 66.4
Adult Fat Body
 
 174
Adult Salivary Gland
 
 111.9
Adult Heart
 
 100.7
Adult VirginFemale Spermatheca
 
 176.9
Adult InseminatedFemale Spermatheca
 
 208.4
Adult Ovary
 
 535
Adult Testis
 
 48.8
Adult Male Accessory Gland
 
 194
Adult Carcass
 
 91.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0260012 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 344.425
Larval Midgut
 
 95.8
Larval Hindgut
 
 138.4
Larval Malpighian Tubules
 
 117.2
Larval Fat Body
 
 101.7
Larval Salivary Gland
 
 140.3
Larval Trachea
 
 109.35
Larval Carcass
 
 106.85
Adult Head
 
 89.9
Adult Eye
 
 67.025
Adult Brain
 
 199.3
Adult Thoracic-Abdominal Ganglion
 
 169.4
Adult Crop
 
 156.5
Adult Midgut
 
 89.9
Adult Hindgut
 
 102.5
Adult Malpighian Tubules
 
 66.4
Adult Fat Body
 
 174
Adult Salivary Gland
 
 111.9
Adult Heart
 
 100.7
Adult VirginFemale Spermatheca
 
 176.9
Adult InseminatedFemale Spermatheca
 
 208.4
Adult Ovary
 
 535
Adult Testis
 
 48.8
Adult Male Accessory Gland
 
 194
Adult Carcass
 
 91.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 344.425
Larval Midgut
 
 95.8
Larval Hindgut
 
 138.4
Larval Malpighian Tubules
 
 117.2
Larval Fat Body
 
 101.7
Larval Salivary Gland
 
 140.3
Larval Trachea
 
 109.35
Larval Carcass
 
 106.85
Adult Head
 
 89.9
Adult Eye
 
 67.025
Adult Brain
 
 199.3
Adult Thoracic-Abdominal Ganglion
 
 169.4
Adult Crop
 
 156.5
Adult Midgut
 
 89.9
Adult Hindgut
 
 102.5
Adult Malpighian Tubules
 
 66.4
Adult Fat Body
 
 174
Adult Salivary Gland
 
 111.9
Adult Heart
 
 100.7
Adult VirginFemale Spermatheca
 
 176.9
Adult InseminatedFemale Spermatheca
 
 208.4
Adult Ovary
 535
Adult Testis
 
 48.8
Adult Male Accessory Gland
 
 194
Adult Carcass
 
 91.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 344.425
Larval Midgut
 
 95.8
Larval Hindgut
 
 138.4
Larval Malpighian Tubules
 
 117.2
Larval Fat Body
 
 101.7
Larval Salivary Gland
 
 140.3
Larval Trachea
 
 109.35
Larval Carcass
 
 106.85
Adult Head
 
 89.9
Adult Eye
 
 67.025
Adult Brain
 
 199.3
Adult Thoracic-Abdominal Ganglion
 
 169.4
Adult Crop
 
 156.5
Adult Midgut
 
 89.9
Adult Hindgut
 
 102.5
Adult Malpighian Tubules
 
 66.4
Adult Fat Body
 
 174
Adult Salivary Gland
 
 111.9
Adult Heart
 
 100.7
Adult VirginFemale Spermatheca
 
 176.9
Adult InseminatedFemale Spermatheca
 
 208.4
Adult Ovary
 
 535
Adult Testis
 
 48.8
Adult Male Accessory Gland
 
 194
Adult Carcass
 
 91.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 344.425
Larval Midgut
 
 95.8
Larval Hindgut
 
 138.4
Larval Malpighian Tubules
 
 117.2
Larval Fat Body
 
 101.7
Larval Salivary Gland
 
 140.3
Larval Trachea
 
 109.35
Larval Carcass
 
 106.85
Adult Head
 
 89.9
Adult Eye
 
 67.025
Adult Brain
 
 199.3
Adult Thoracic-Abdominal Ganglion
 
 169.4
Adult Crop
 
 156.5
Adult Midgut
 
 89.9
Adult Hindgut
 
 102.5
Adult Malpighian Tubules
 
 66.4
Adult Fat Body
 
 174
Adult Salivary Gland
 
 111.9
Adult Heart
 
 100.7
Adult VirginFemale Spermatheca
 
 176.9
Adult InseminatedFemale Spermatheca
 
 208.4
Adult Ovary
 
 535
Adult Testis
 
 48.8
Adult Male Accessory Gland
 
 194
Adult Carcass
 
 91.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 89.9
 
NA 
Eye
 
 67.025
 
NA 
Brain
 
 199.3
 
344.425 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 169.4
 
NA 
Crop
 
 156.5
 
95.8 
Midgut
 
 89.9
 
138.4 
Hindgut
 
 102.5
 
117.2 
Malpighian Tubules
 
 66.4
 
101.7 
Fat Body
 
 174
 
140.3 
Salivary Gland
 
 111.9
 
NA 
Heart
 
 100.7
 
109.35 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 176.9
 
NA 
InseminatedFemale Spermatheca
 
 208.4
 
NA 
Ovary
 
 535
 
NA 
Testis
 
 48.8
 
NA 
Male Accessory Gland
 
 194
 
106.85 
Carcass
 
 91.3

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 12 )
For All Classical Alleles Show

Allele of pds5ClassMutagenStocksKnown lesion
pds5k133122 --
pds5e31 Yes
pds5e61 Yes
pds5EY064731 --
pds510 --
pds520 --
pds530 --
pds540 --
pds550 --
pds560 --
pds570 --
pds580 --
hide Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show

Allele of pds5ClassMutagenStocksKnown lesion
pds5GD147952 Yes
pds5GL004791 Yes
pds5Chi.T:Avic\GFP-EGFP0 Yes
hide Aneuploid Aberrations
Not disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
UAS construct
characterization construct
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
insertion of enhancer trap
hide Gene Ontology: Function, Process & Cellular Component ( 7 unique terms )
hide Terms Based on Experimental Evidence ( 6 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component
CV term
References
colocalizes_with
cohesin complex
inferred from direct assay
inferred from direct assay
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term
References
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
pds5 allele
Gene
References
hide External Data
Linkouts
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 8 )
Bloomington
Kyoto
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 58 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
polyclonal
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hide Discoverer
hide Etymology
The gene is named "cohiba", after a brand of Cuban cigars, due to the mutant eggshell phenotype.
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for identity of: pds5 CG17509
Source for database merge of
Source for merge of: CG17509 anon-WO0118547.183
Source for merge of: pds5 Pds5 l(2)k13312
Additional comments
Source for merge of CG17509 anon-WO0118547.183 was sequence comparison (date:051113).
hide Other Comments
Area matching Drosophila ESTS AI064123 and AA263284 (inverted).
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym
anon-WO0118547.183
 
l(2)k13312
Name Synonym
CG17509
 
lethal (2) k13312
 
pds5
 
Secondary FlyBase IDs
  • FBgn0021887
  • FBgn0033676
  • FBgn0062185
  • FBgn0086756
hide References ( 20 )
Research paper
Gause et al., 2010, Mol. Cell. Biol. 30(20): 4940--4951
Dosage-sensitive regulation of Cohesin chromosome binding and dynamics by Nipped-B, Pds5, and Wapl. [FBrf0211896]
Ogura et al., 2009, Radiat. Res. 171(1): 1--8
Reduction in Mutation Frequency by Very Low-Dose Gamma Irradiation of Drosophila melanogaster Germ Cells. [FBrf0206576]
Gause et al., 2008, Chromosoma 117(1): 51--66
Functional links between Drosophila Nipped-B and cohesin in somatic and meiotic cells. [FBrf0203143]
Hallson et al., 2008, Proc. Natl. Acad. Sci. U.S.A. 105(34): 12405--12410
The Drosophila cohesin subunit Rad21 is a trithorax group (trxG) protein. [FBrf0205879]
Barbosa et al., 2007, Genetics 176(4): 1967--1977
A maternal screen for genes regulating Drosophila oocyte polarity uncovers new steps in meiotic progression. [FBrf0200974]
Dorsett et al., 2005, Development 132(21): 4743--4753
Effects of sister chromatid cohesion proteins on cut gene expression during wing development in Drosophila. [FBrf0190284]
Spradling et al., 1999, Genetics 153(1): 135--177
The Berkeley Drosophila genome project gene disruption project. Single P-element insertions mutating 25% of vital Drosophila genes. [FBrf0111489]
Supplementary material
The modENCODE Consortium, 2010, Science 330(6012):
DataS14: Gene co-expression clusters. [FBrf0213979]
Mummery-Widmer et al., 2009, Nature 458(7241):
Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase
Ni et al., 2011.7.19, TRiP germline vector pVALIUM21.
TRiP germline vector pVALIUM21. [FBrf0214641]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center
RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.
Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
FlyBase analysis
FlyBase, 1996-, FlyBase inference based on genome sequence analysis.
FlyBase inference based on genome sequence analysis. [FBrf0104946]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Conference report
Garcia et al., 2007, Fly 1(2): 125--131
Cell cycle regulation. [FBrf0200076]
Patent
Davies et al., 2001, World Patent 0118547:
Essential genes and assays relating thereto. [FBrf0199103]
DNA/RNA sequence record
Davies, 2001.3.15, GenBank/EMBL/DDBJ: AX094059
Sequence 183 from Patent WO0118547. [FBrf0149872]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0125078]
BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0067338]