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Gene Dmel\CG42502

General Information
Symbol	Dmel\CG42502	Species	D. melanogaster
Name		Annotation symbol	CG42502
Feature type	protein_coding_gene	FlyBase ID	FBgn0260228
Gene Model Status	Current	Stock availability	None publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	37A4-37A4	Sequence location	2L:18,810,036..18,810,986 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG42502 (FBgn0260228). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of extremely low expression. Peak expression observed during late larval stages. This gene is annotated by FlyBase as a dicistronic gene, meaning that some or all of its transcripts encode two or more polypeptide-coding open reading frames (ORFs) , with each ORF assigned to a different gene. The distribution of RNA-Seq coverage data amongst the different encoded genes cannot be determined. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, adult heart, larval trachea, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval hindgut, adult fat body, adult testis. Comments on Affy2 ProbeSet: ProbeSet 1636268_at aligns to a genomic region shared by exons of 2 FlyBase-annotated genes; hence it is impossible to interpret the expression pattern and levels of CG10570 expression signal. See the GBrowse view of CG10570 to determine the overlapping gene(s). Gene sequence location is 2L:18810036..18810986.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 37A4-37A4
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG42502 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45 gene_with_dicistronic_mRNA ; SO:0000722
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG42502-RA FBtr0300635  NM_001169540   817   50
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG42502-PA   FBpp0289860   5.5   50   11.60     NP_001163011   ACZ94297
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 ACZ94297   AI064121   AI107303   AI260324   AI293660   AI387675   AI403076   AI403711   AY070522   BG632394   BI604362   BI621449   BI627805   BT133081   CO185867   CO187133   CO187746   CO190103   CO191063   CO281901   CO324452   CO326038   DN154457   EC056734   EC074904   EC079676   EC205638   EC205685   EC206603   EC211173   EC217022   EC223799   EC240875   EC251539   EV576329   EV577424   EV589288   EV600614
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	E1JHL4
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, adult heart, larval trachea, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval hindgut, adult fat body, adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    183.475 Larval Midgut    15.5 Larval Hindgut    371.9 Larval Malpighian Tubules    10.3 Larval Fat Body    5.7 Larval Salivary Gland    5.8 Larval Trachea    972.725 Larval Carcass    4212.8 Adult Head    3915.9 Adult Eye    3771.175 Adult Brain    88 Adult Thoracic-Abdominal Ganglion    113.6 Adult Crop    505.6 Adult Midgut    1 Adult Hindgut    40.3 Adult Malpighian Tubules    8 Adult Fat Body    439.4 Adult Salivary Gland    56.6 Adult Heart    882.925 Adult VirginFemale Spermatheca    16.9 Adult InseminatedFemale Spermatheca    22.1 Adult Ovary    34 Adult Testis    362.6 Adult Male Accessory Gland    4085.9 Adult Carcass    5277.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    183.475 Larval Midgut    15.5 Larval Hindgut    371.9 Larval Malpighian Tubules    10.3 Larval Fat Body    5.7 Larval Salivary Gland    5.8 Larval Trachea  (972.725) Larval Carcass  (4212.8) Adult Head  (3915.9) Adult Eye  (3771.175) Adult Brain    88 Adult Thoracic-Abdominal Ganglion    113.6 Adult Crop  505.6 Adult Midgut    1 Adult Hindgut    40.3 Adult Malpighian Tubules    8 Adult Fat Body    439.4 Adult Salivary Gland    56.6 Adult Heart  (882.925) Adult VirginFemale Spermatheca    16.9 Adult InseminatedFemale Spermatheca    22.1 Adult Ovary    34 Adult Testis    362.6 Adult Male Accessory Gland  (4085.9) Adult Carcass  (5277.2) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    183.475 Larval Midgut    15.5 Larval Hindgut    371.9 Larval Malpighian Tubules    10.3 Larval Fat Body    5.7 Larval Salivary Gland    5.8 Larval Trachea    972.725 Larval Carcass  (4212.8) Adult Head  (3915.9) Adult Eye  (3771.175) Adult Brain    88 Adult Thoracic-Abdominal Ganglion    113.6 Adult Crop    505.6 Adult Midgut    1 Adult Hindgut    40.3 Adult Malpighian Tubules    8 Adult Fat Body    439.4 Adult Salivary Gland    56.6 Adult Heart    882.925 Adult VirginFemale Spermatheca    16.9 Adult InseminatedFemale Spermatheca    22.1 Adult Ovary    34 Adult Testis    362.6 Adult Male Accessory Gland  (4085.9) Adult Carcass  (5277.2) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    183.475 Larval Midgut    15.5 Larval Hindgut    371.9 Larval Malpighian Tubules    10.3 Larval Fat Body    5.7 Larval Salivary Gland    5.8 Larval Trachea    972.725 Larval Carcass    4212.8 Adult Head    3915.9 Adult Eye    3771.175 Adult Brain    88 Adult Thoracic-Abdominal Ganglion    113.6 Adult Crop    505.6 Adult Midgut    1 Adult Hindgut    40.3 Adult Malpighian Tubules    8 Adult Fat Body    439.4 Adult Salivary Gland    56.6 Adult Heart    882.925 Adult VirginFemale Spermatheca    16.9 Adult InseminatedFemale Spermatheca    22.1 Adult Ovary    34 Adult Testis    362.6 Adult Male Accessory Gland    4085.9 Adult Carcass    5277.2 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    183.475 Larval Midgut    15.5 Larval Hindgut    371.9 Larval Malpighian Tubules    10.3 Larval Fat Body    5.7 Larval Salivary Gland    5.8 Larval Trachea    972.725 Larval Carcass    4212.8 Adult Head    3915.9 Adult Eye    3771.175 Adult Brain    88 Adult Thoracic-Abdominal Ganglion    113.6 Adult Crop    505.6 Adult Midgut    1 Adult Hindgut    40.3 Adult Malpighian Tubules    8 Adult Fat Body    439.4 Adult Salivary Gland    56.6 Adult Heart    882.925 Adult VirginFemale Spermatheca    16.9 Adult InseminatedFemale Spermatheca    22.1 Adult Ovary    34 Adult Testis    362.6 Adult Male Accessory Gland    4085.9 Adult Carcass    5277.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    183.475 Larval Midgut    15.5 Larval Hindgut    371.9 Larval Malpighian Tubules    10.3 Larval Fat Body    5.7 Larval Salivary Gland    5.8 Larval Trachea  (972.725) Larval Carcass  (4212.8) Adult Head  (3915.9) Adult Eye  (3771.175) Adult Brain    88 Adult Thoracic-Abdominal Ganglion    113.6 Adult Crop  505.6 Adult Midgut    1 Adult Hindgut    40.3 Adult Malpighian Tubules    8 Adult Fat Body    439.4 Adult Salivary Gland    56.6 Adult Heart  (882.925) Adult VirginFemale Spermatheca    16.9 Adult InseminatedFemale Spermatheca    22.1 Adult Ovary    34 Adult Testis    362.6 Adult Male Accessory Gland  (4085.9) Adult Carcass  (5277.2) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    183.475 Larval Midgut    15.5 Larval Hindgut    371.9 Larval Malpighian Tubules    10.3 Larval Fat Body    5.7 Larval Salivary Gland    5.8 Larval Trachea    972.725 Larval Carcass  (4212.8) Adult Head  (3915.9) Adult Eye  (3771.175) Adult Brain    88 Adult Thoracic-Abdominal Ganglion    113.6 Adult Crop    505.6 Adult Midgut    1 Adult Hindgut    40.3 Adult Malpighian Tubules    8 Adult Fat Body    439.4 Adult Salivary Gland    56.6 Adult Heart    882.925 Adult VirginFemale Spermatheca    16.9 Adult InseminatedFemale Spermatheca    22.1 Adult Ovary    34 Adult Testis    362.6 Adult Male Accessory Gland  (4085.9) Adult Carcass  (5277.2) Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    183.475 Larval Midgut    15.5 Larval Hindgut    371.9 Larval Malpighian Tubules    10.3 Larval Fat Body    5.7 Larval Salivary Gland    5.8 Larval Trachea    972.725 Larval Carcass    4212.8 Adult Head    3915.9 Adult Eye    3771.175 Adult Brain    88 Adult Thoracic-Abdominal Ganglion    113.6 Adult Crop    505.6 Adult Midgut    1 Adult Hindgut    40.3 Adult Malpighian Tubules    8 Adult Fat Body    439.4 Adult Salivary Gland    56.6 Adult Heart    882.925 Adult VirginFemale Spermatheca    16.9 Adult InseminatedFemale Spermatheca    22.1 Adult Ovary    34 Adult Testis    362.6 Adult Male Accessory Gland    4085.9 Adult Carcass    5277.2 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    3915.9   NA  Eye    3771.175   NA  Brain    88   183.475  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    113.6   NA  Crop    505.6   no informative data  Midgut    1   371.9  Hindgut    40.3   no informative data  Malpighian Tubules    8   5.7  Fat Body    439.4   5.8  Salivary Gland    no informative data   NA  Heart    882.925   972.725  Trachea    NA   NA  VirginFemale Spermatheca    16.9   NA  InseminatedFemale Spermatheca    22.1   NA  Ovary    34   NA  Testis    362.6   NA  Male Accessory Gland    4085.9   4212.8  Carcass    5277.2 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    83 central nervous system, pupae P8    3 head, virgin 1-day female    750 head, virgin 4-day female    963 head, virgin 20-day female    490 head, mated 1-day female    909 head, mated 4-day female    668 head, mated 20-day female    555 head, mated 1-day male    1118 head, mated 4-day male    1186 head, mated 20-day male    1644 salivary gland, larvae L3 wandering    17 salivary gland, white prepupae    22 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    21 digestive system, 4-day adult    23 digestive system, 20-day adult    10 fat body, larvae L3 wandering    1 fat body, white prepupae    9 fat body, pupae P8    1 carcass, larvae L3 wandering    1462 carcass, 1-day adult    1013 carcass, 4-day adult    821 carcass, 20-day adult    694 ovary, virgin 4-day female    2 ovary, mated 4-day female    3 testis, mated 4-day male    101 accessory gland, mated 4-day male    177 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3  (83) central nervous system, pupae P8    3 head, virgin 1-day female  (750) head, virgin 4-day female  (963) head, virgin 20-day female  (490) head, mated 1-day female  (909) head, mated 4-day female  (668) head, mated 20-day female  (555) head, mated 1-day male  (1118) head, mated 4-day male  (1186) head, mated 20-day male  (1644) salivary gland, larvae L3 wandering    17 salivary gland, white prepupae    22 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    21 digestive system, 4-day adult    23 digestive system, 20-day adult    10 fat body, larvae L3 wandering    1 fat body, white prepupae    9 fat body, pupae P8    1 carcass, larvae L3 wandering  (1462) carcass, 1-day adult  (1013) carcass, 4-day adult  (821) carcass, 20-day adult  (694) ovary, virgin 4-day female    2 ovary, mated 4-day female    3 testis, mated 4-day male  (101) accessory gland, mated 4-day male  (177) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    83 central nervous system, pupae P8    3 head, virgin 1-day female  (750) head, virgin 4-day female  (963) head, virgin 20-day female  (490) head, mated 1-day female  (909) head, mated 4-day female  (668) head, mated 20-day female  (555) head, mated 1-day male  (1118) head, mated 4-day male  (1186) head, mated 20-day male  (1644) salivary gland, larvae L3 wandering    17 salivary gland, white prepupae    22 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    21 digestive system, 4-day adult    23 digestive system, 20-day adult    10 fat body, larvae L3 wandering    1 fat body, white prepupae    9 fat body, pupae P8    1 carcass, larvae L3 wandering  (1462) carcass, 1-day adult  (1013) carcass, 4-day adult  (821) carcass, 20-day adult  (694) ovary, virgin 4-day female    2 ovary, mated 4-day female    3 testis, mated 4-day male  101 accessory gland, mated 4-day male  (177) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    83 central nervous system, pupae P8    3 head, virgin 1-day female    750 head, virgin 4-day female    963 head, virgin 20-day female    490 head, mated 1-day female    909 head, mated 4-day female    668 head, mated 20-day female    555 head, mated 1-day male    1118 head, mated 4-day male    1186 head, mated 20-day male    1644 salivary gland, larvae L3 wandering    17 salivary gland, white prepupae    22 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    21 digestive system, 4-day adult    23 digestive system, 20-day adult    10 fat body, larvae L3 wandering    1 fat body, white prepupae    9 fat body, pupae P8    1 carcass, larvae L3 wandering    1462 carcass, 1-day adult    1013 carcass, 4-day adult    821 carcass, 20-day adult    694 ovary, virgin 4-day female    2 ovary, mated 4-day female    3 testis, mated 4-day male    101 accessory gland, mated 4-day male    177 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    83 central nervous system, pupae P8    3 head, virgin 1-day female    750 head, virgin 4-day female    963 head, virgin 20-day female    490 head, mated 1-day female    909 head, mated 4-day female    668 head, mated 20-day female    555 head, mated 1-day male    1118 head, mated 4-day male    1186 head, mated 20-day male    1644 salivary gland, larvae L3 wandering    17 salivary gland, white prepupae    22 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    21 digestive system, 4-day adult    23 digestive system, 20-day adult    10 fat body, larvae L3 wandering    1 fat body, white prepupae    9 fat body, pupae P8    1 carcass, larvae L3 wandering    1462 carcass, 1-day adult    1013 carcass, 4-day adult    821 carcass, 20-day adult    694 ovary, virgin 4-day female    2 ovary, mated 4-day female    3 testis, mated 4-day male    101 accessory gland, mated 4-day male    177 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3  (83) central nervous system, pupae P8    3 head, virgin 1-day female  (750) head, virgin 4-day female  (963) head, virgin 20-day female  (490) head, mated 1-day female  (909) head, mated 4-day female  (668) head, mated 20-day female  (555) head, mated 1-day male  (1118) head, mated 4-day male  (1186) head, mated 20-day male  (1644) salivary gland, larvae L3 wandering    17 salivary gland, white prepupae    22 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    21 digestive system, 4-day adult    23 digestive system, 20-day adult    10 fat body, larvae L3 wandering    1 fat body, white prepupae    9 fat body, pupae P8    1 carcass, larvae L3 wandering  (1462) carcass, 1-day adult  (1013) carcass, 4-day adult  (821) carcass, 20-day adult  (694) ovary, virgin 4-day female    2 ovary, mated 4-day female    3 testis, mated 4-day male  (101) accessory gland, mated 4-day male  (177) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    83 central nervous system, pupae P8    3 head, virgin 1-day female  (750) head, virgin 4-day female  (963) head, virgin 20-day female  (490) head, mated 1-day female  (909) head, mated 4-day female  (668) head, mated 20-day female  (555) head, mated 1-day male  (1118) head, mated 4-day male  (1186) head, mated 20-day male  (1644) salivary gland, larvae L3 wandering    17 salivary gland, white prepupae    22 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    21 digestive system, 4-day adult    23 digestive system, 20-day adult    10 fat body, larvae L3 wandering    1 fat body, white prepupae    9 fat body, pupae P8    1 carcass, larvae L3 wandering  (1462) carcass, 1-day adult  (1013) carcass, 4-day adult  (821) carcass, 20-day adult  (694) ovary, virgin 4-day female    2 ovary, mated 4-day female    3 testis, mated 4-day male  101 accessory gland, mated 4-day male  (177) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    83 central nervous system, pupae P8    3 head, virgin 1-day female    750 head, virgin 4-day female    963 head, virgin 20-day female    490 head, mated 1-day female    909 head, mated 4-day female    668 head, mated 20-day female    555 head, mated 1-day male    1118 head, mated 4-day male    1186 head, mated 20-day male    1644 salivary gland, larvae L3 wandering    17 salivary gland, white prepupae    22 digestive system, larvae L3 wandering    4 digestive system, 1-day adult    21 digestive system, 4-day adult    23 digestive system, 20-day adult    10 fat body, larvae L3 wandering    1 fat body, white prepupae    9 fat body, pupae P8    1 carcass, larvae L3 wandering    1462 carcass, 1-day adult    1013 carcass, 4-day adult    821 carcass, 20-day adult    694 ovary, virgin 4-day female    2 ovary, mated 4-day female    3 testis, mated 4-day male    101 accessory gland, mated 4-day male    177 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of extremely low expression. Peak expression observed during late larval stages. This gene is annotated by FlyBase as a dicistronic gene, meaning that some or all of its transcripts encode two or more polypeptide-coding open reading frames (ORFs) , with each ORF assigned to a different gene. The distribution of RNA-Seq coverage data amongst the different encoded genes cannot be determined. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    1 embryo 16-18hr    10 embryo 18-20hr    34 embryo 20-22hr    1 embryo 22-24hr    2 larva L1    3 larva L2    25 larva L3 12hr old    156 larva L3 puffstage 1-2    975 larva L3 puffstage 3-6    1295 larva L3 puffstage 7-9    1463 white prepupae new    583 white prepupae 12hr    79 white prepupae 24hr    32 pupae 2d postWPP    28 pupae 3d postWPP    27 pupae 4d postWPP    167 adult male 01day    407 adult male 05day    419 adult male 30day    192 adult female 01day    156 adult female 05day    117 adult female 30day    62 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    1 embryo 16-18hr    10 embryo 18-20hr  (34) embryo 20-22hr    1 embryo 22-24hr    2 larva L1    3 larva L2    25 larva L3 12hr old  (156) larva L3 puffstage 1-2  (975) larva L3 puffstage 3-6  (1295) larva L3 puffstage 7-9  (1463) white prepupae new  (583) white prepupae 12hr  (79) white prepupae 24hr  (32) pupae 2d postWPP  (28) pupae 3d postWPP  (27) pupae 4d postWPP  (167) adult male 01day  (407) adult male 05day  (419) adult male 30day  (192) adult female 01day  (156) adult female 05day  (117) adult female 30day  (62) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    1 embryo 16-18hr    10 embryo 18-20hr    34 embryo 20-22hr    1 embryo 22-24hr    2 larva L1    3 larva L2    25 larva L3 12hr old  (156) larva L3 puffstage 1-2  (975) larva L3 puffstage 3-6  (1295) larva L3 puffstage 7-9  (1463) white prepupae new  (583) white prepupae 12hr    79 white prepupae 24hr    32 pupae 2d postWPP    28 pupae 3d postWPP    27 pupae 4d postWPP  (167) adult male 01day  (407) adult male 05day  (419) adult male 30day  (192) adult female 01day  (156) adult female 05day  (117) adult female 30day    62 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    1 embryo 16-18hr    10 embryo 18-20hr    34 embryo 20-22hr    1 embryo 22-24hr    2 larva L1    3 larva L2    25 larva L3 12hr old    156 larva L3 puffstage 1-2    975 larva L3 puffstage 3-6    1295 larva L3 puffstage 7-9    1463 white prepupae new    583 white prepupae 12hr    79 white prepupae 24hr    32 pupae 2d postWPP    28 pupae 3d postWPP    27 pupae 4d postWPP    167 adult male 01day    407 adult male 05day    419 adult male 30day    192 adult female 01day    156 adult female 05day    117 adult female 30day    62 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    1 embryo 16-18hr    10 embryo 18-20hr    34 embryo 20-22hr    1 embryo 22-24hr    2 larva L1    3 larva L2    25 larva L3 12hr old    156 larva L3 puffstage 1-2    975 larva L3 puffstage 3-6    1295 larva L3 puffstage 7-9    1463 white prepupae new    583 white prepupae 12hr    79 white prepupae 24hr    32 pupae 2d postWPP    28 pupae 3d postWPP    27 pupae 4d postWPP    167 adult male 01day    407 adult male 05day    419 adult male 30day    192 adult female 01day    156 adult female 05day    117 adult female 30day    62 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    1 embryo 16-18hr    10 embryo 18-20hr  (34) embryo 20-22hr    1 embryo 22-24hr    2 larva L1    3 larva L2    25 larva L3 12hr old  (156) larva L3 puffstage 1-2  (975) larva L3 puffstage 3-6  (1295) larva L3 puffstage 7-9  (1463) white prepupae new  (583) white prepupae 12hr  (79) white prepupae 24hr  32 pupae 2d postWPP  28 pupae 3d postWPP  27 pupae 4d postWPP  (167) adult male 01day  (407) adult male 05day  (419) adult male 30day  (192) adult female 01day  (156) adult female 05day  (117) adult female 30day  (62) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    1 embryo 16-18hr    10 embryo 18-20hr    34 embryo 20-22hr    1 embryo 22-24hr    2 larva L1    3 larva L2    25 larva L3 12hr old  (156) larva L3 puffstage 1-2  (975) larva L3 puffstage 3-6  (1295) larva L3 puffstage 7-9  (1463) white prepupae new  (583) white prepupae 12hr    79 white prepupae 24hr    32 pupae 2d postWPP    28 pupae 3d postWPP    27 pupae 4d postWPP  (167) adult male 01day  (407) adult male 05day  (419) adult male 30day  (192) adult female 01day  (156) adult female 05day  117 adult female 30day    62 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    1 embryo 16-18hr    10 embryo 18-20hr    34 embryo 20-22hr    1 embryo 22-24hr    2 larva L1    3 larva L2    25 larva L3 12hr old    156 larva L3 puffstage 1-2    975 larva L3 puffstage 3-6    1295 larva L3 puffstage 7-9    1463 white prepupae new    583 white prepupae 12hr    79 white prepupae 24hr    32 pupae 2d postWPP    28 pupae 3d postWPP    27 pupae 4d postWPP    167 adult male 01day    407 adult male 05day    419 adult male 30day    192 adult female 01day    156 adult female 05day    117 adult female 30day    62 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    2 embryonic 1182-4H    1 embryonic GM2    36 embryonic Kc167    81 embryonic S1    1 embryonic S3    0 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    2 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    537 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    2 embryonic 1182-4H    1 embryonic GM2  (36) embryonic Kc167  (81) embryonic S1    1 embryonic S3    0 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    2 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1  26 CNS ML-DmBG2-c2  (537) tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    2 embryonic 1182-4H    1 embryonic GM2    36 embryonic Kc167    81 embryonic S1    1 embryonic S3    0 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    2 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2  (537) tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    2 embryonic 1182-4H    1 embryonic GM2    36 embryonic Kc167    81 embryonic S1    1 embryonic S3    0 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    2 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    537 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    2 embryonic 1182-4H    1 embryonic GM2    36 embryonic Kc167    81 embryonic S1    1 embryonic S3    0 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    2 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    537 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    2 embryonic 1182-4H    1 embryonic GM2  (36) embryonic Kc167  (81) embryonic S1    1 embryonic S3    0 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    2 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1  26 CNS ML-DmBG2-c2  (537) tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    2 embryonic 1182-4H    1 embryonic GM2    36 embryonic Kc167    81 embryonic S1    1 embryonic S3    0 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    2 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2  (537) tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    2 embryonic 1182-4H    1 embryonic GM2    36 embryonic Kc167    81 embryonic S1    1 embryonic S3    0 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    2 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    537 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    116 cold shock, 4-day adult    112 heat shock, 4-day adult    104 Cadmium 50 mM 6 hrs, larvae L3    230 Cadmium 50 mM 12 hrs, larvae L3    581 Cadmium 50 mM 48 hrs, 4-day adult    113 Cadmium 100 mM 48 hrs, 4-day adult    137 Copper 0.5 mM 12 hrs, larvae L3    146 Copper 15 mM 48 hrs, 4-day adult    501 Zinc 5 mM 12 hrs, larvae L3    99 Zinc 4.5 mM 48 hrs, 4-day adult    573 Ethanol 2.5% 3 hrs, larvae L3    113 Ethanol 5% 3 hrs, larvae L3    168 Ethanol 10% 3 hrs, larvae L3    74 Caffeine 1.5 mg/ml 4 hrs, larvae L3    120 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    372 Caffeine 25 mg/ml 48 hrs, 4-day adult    138 Paraquat 5 mM 48 hrs, 4-day adult    464 Paraquat 10 mM 48 hrs, 4-day adult    333 Rotenone 2 μg 12 hrs, larvae L3    173 Rotenone 8 μg 12 hrs, larvae L3    102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (116) cold shock, 4-day adult  (112) heat shock, 4-day adult  (104) Cadmium 50 mM 6 hrs, larvae L3  (230) Cadmium 50 mM 12 hrs, larvae L3  (581) Cadmium 50 mM 48 hrs, 4-day adult  (113) Cadmium 100 mM 48 hrs, 4-day adult  (137) Copper 0.5 mM 12 hrs, larvae L3  (146) Copper 15 mM 48 hrs, 4-day adult  (501) Zinc 5 mM 12 hrs, larvae L3  (99) Zinc 4.5 mM 48 hrs, 4-day adult  (573) Ethanol 2.5% 3 hrs, larvae L3  (113) Ethanol 5% 3 hrs, larvae L3  (168) Ethanol 10% 3 hrs, larvae L3  (74) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (120) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (372) Caffeine 25 mg/ml 48 hrs, 4-day adult  (138) Paraquat 5 mM 48 hrs, 4-day adult  (464) Paraquat 10 mM 48 hrs, 4-day adult  (333) Rotenone 2 μg 12 hrs, larvae L3  (173) Rotenone 8 μg 12 hrs, larvae L3  (102) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (116) cold shock, 4-day adult  (112) heat shock, 4-day adult  104 Cadmium 50 mM 6 hrs, larvae L3  (230) Cadmium 50 mM 12 hrs, larvae L3  (581) Cadmium 50 mM 48 hrs, 4-day adult  (113) Cadmium 100 mM 48 hrs, 4-day adult  (137) Copper 0.5 mM 12 hrs, larvae L3  (146) Copper 15 mM 48 hrs, 4-day adult  (501) Zinc 5 mM 12 hrs, larvae L3    99 Zinc 4.5 mM 48 hrs, 4-day adult  (573) Ethanol 2.5% 3 hrs, larvae L3  (113) Ethanol 5% 3 hrs, larvae L3  (168) Ethanol 10% 3 hrs, larvae L3    74 Caffeine 1.5 mg/ml 4 hrs, larvae L3  (120) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (372) Caffeine 25 mg/ml 48 hrs, 4-day adult  (138) Paraquat 5 mM 48 hrs, 4-day adult  (464) Paraquat 10 mM 48 hrs, 4-day adult  (333) Rotenone 2 μg 12 hrs, larvae L3  (173) Rotenone 8 μg 12 hrs, larvae L3  102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    116 cold shock, 4-day adult    112 heat shock, 4-day adult    104 Cadmium 50 mM 6 hrs, larvae L3    230 Cadmium 50 mM 12 hrs, larvae L3    581 Cadmium 50 mM 48 hrs, 4-day adult    113 Cadmium 100 mM 48 hrs, 4-day adult    137 Copper 0.5 mM 12 hrs, larvae L3    146 Copper 15 mM 48 hrs, 4-day adult    501 Zinc 5 mM 12 hrs, larvae L3    99 Zinc 4.5 mM 48 hrs, 4-day adult    573 Ethanol 2.5% 3 hrs, larvae L3    113 Ethanol 5% 3 hrs, larvae L3    168 Ethanol 10% 3 hrs, larvae L3    74 Caffeine 1.5 mg/ml 4 hrs, larvae L3    120 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    372 Caffeine 25 mg/ml 48 hrs, 4-day adult    138 Paraquat 5 mM 48 hrs, 4-day adult    464 Paraquat 10 mM 48 hrs, 4-day adult    333 Rotenone 2 μg 12 hrs, larvae L3    173 Rotenone 8 μg 12 hrs, larvae L3    102 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    116 cold shock, 4-day adult    112 heat shock, 4-day adult    104 Cadmium 50 mM 6 hrs, larvae L3    230 Cadmium 50 mM 12 hrs, larvae L3    581 Cadmium 50 mM 48 hrs, 4-day adult    113 Cadmium 100 mM 48 hrs, 4-day adult    137 Copper 0.5 mM 12 hrs, larvae L3    146 Copper 15 mM 48 hrs, 4-day adult    501 Zinc 5 mM 12 hrs, larvae L3    99 Zinc 4.5 mM 48 hrs, 4-day adult    573 Ethanol 2.5% 3 hrs, larvae L3    113 Ethanol 5% 3 hrs, larvae L3    168 Ethanol 10% 3 hrs, larvae L3    74 Caffeine 1.5 mg/ml 4 hrs, larvae L3    120 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    372 Caffeine 25 mg/ml 48 hrs, 4-day adult    138 Paraquat 5 mM 48 hrs, 4-day adult    464 Paraquat 10 mM 48 hrs, 4-day adult    333 Rotenone 2 μg 12 hrs, larvae L3    173 Rotenone 8 μg 12 hrs, larvae L3    102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (116) cold shock, 4-day adult  (112) heat shock, 4-day adult  (104) Cadmium 50 mM 6 hrs, larvae L3  (230) Cadmium 50 mM 12 hrs, larvae L3  (581) Cadmium 50 mM 48 hrs, 4-day adult  (113) Cadmium 100 mM 48 hrs, 4-day adult  (137) Copper 0.5 mM 12 hrs, larvae L3  (146) Copper 15 mM 48 hrs, 4-day adult  (501) Zinc 5 mM 12 hrs, larvae L3  (99) Zinc 4.5 mM 48 hrs, 4-day adult  (573) Ethanol 2.5% 3 hrs, larvae L3  (113) Ethanol 5% 3 hrs, larvae L3  (168) Ethanol 10% 3 hrs, larvae L3  (74) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (120) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (372) Caffeine 25 mg/ml 48 hrs, 4-day adult  (138) Paraquat 5 mM 48 hrs, 4-day adult  (464) Paraquat 10 mM 48 hrs, 4-day adult  (333) Rotenone 2 μg 12 hrs, larvae L3  (173) Rotenone 8 μg 12 hrs, larvae L3  (102) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  116 cold shock, 4-day adult  112 heat shock, 4-day adult  104 Cadmium 50 mM 6 hrs, larvae L3  (230) Cadmium 50 mM 12 hrs, larvae L3  (581) Cadmium 50 mM 48 hrs, 4-day adult  113 Cadmium 100 mM 48 hrs, 4-day adult  137 Copper 0.5 mM 12 hrs, larvae L3  (146) Copper 15 mM 48 hrs, 4-day adult  (501) Zinc 5 mM 12 hrs, larvae L3    99 Zinc 4.5 mM 48 hrs, 4-day adult  (573) Ethanol 2.5% 3 hrs, larvae L3  113 Ethanol 5% 3 hrs, larvae L3  (168) Ethanol 10% 3 hrs, larvae L3    74 Caffeine 1.5 mg/ml 4 hrs, larvae L3  120 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (372) Caffeine 25 mg/ml 48 hrs, 4-day adult  138 Paraquat 5 mM 48 hrs, 4-day adult  (464) Paraquat 10 mM 48 hrs, 4-day adult  (333) Rotenone 2 μg 12 hrs, larvae L3  (173) Rotenone 8 μg 12 hrs, larvae L3  102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    116 cold shock, 4-day adult    112 heat shock, 4-day adult    104 Cadmium 50 mM 6 hrs, larvae L3    230 Cadmium 50 mM 12 hrs, larvae L3    581 Cadmium 50 mM 48 hrs, 4-day adult    113 Cadmium 100 mM 48 hrs, 4-day adult    137 Copper 0.5 mM 12 hrs, larvae L3    146 Copper 15 mM 48 hrs, 4-day adult    501 Zinc 5 mM 12 hrs, larvae L3    99 Zinc 4.5 mM 48 hrs, 4-day adult    573 Ethanol 2.5% 3 hrs, larvae L3    113 Ethanol 5% 3 hrs, larvae L3    168 Ethanol 10% 3 hrs, larvae L3    74 Caffeine 1.5 mg/ml 4 hrs, larvae L3    120 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    372 Caffeine 25 mg/ml 48 hrs, 4-day adult    138 Paraquat 5 mM 48 hrs, 4-day adult    464 Paraquat 10 mM 48 hrs, 4-day adult    333 Rotenone 2 μg 12 hrs, larvae L3    173 Rotenone 8 μg 12 hrs, larvae L3    102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_04
External Data & Images
Linkouts	BDGP expression data • GH23934 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0260228
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG42502 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG42502 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	gene_with_dicistronic_mRNA (FlyBase Genome Annotators, 2008) nuclear_gene (FlyBase Genome Annotators, 2008) protein_coding_gene (FlyBase Genome Annotators, 2008)
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG42502 allele Gene References
External Data
Linkouts
Orthologs
OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search No orthologs identified Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (None identified)
No orthologies identified
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 1 )
	BACR07J05 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 34 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH23934
Other clones	MIP34516
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH03892 GH04386 GH07738 GH18263 GH22441 GH23210 LP04118 LP06845 RH52792 RH69245 RH69689
Other clones	51774 66190 67855 214403.27 CK01.30B.C5 CK01.38B.H11 CK01.113A.E6 CK01.114C.E6 Dmel_dig_013733_0679_0717 Dmel_dig_014604_0617_2957 Dmel_neb_011037_0885_0272 Dmel_neb_014791_0317_2097 EK003239 EK013827 EK026611 EK032530 EK046544 EK050604 EK159043 EK193754 EP03128
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0260228 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 8674072
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	One or more of the processed transcripts for this gene contain(s) two non-overlapping open reading frames (ORFs). The non-overlapping ORFs are represented by CG10570 and CG42502. (FlyBase Genome Annotators, 2008)
Other Comments
	New annotation (CG42502) in release 5.13 of the genome annotation. (FlyBase Genome Annotators, 2008) Source for new gene model annotation: CG42502 (release 5.13) (Hayden and Bosco, 2008)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_001169540 RefSeq (Proteins) • NP_001163011 DDBJ / EMBL / GenBank • ACZ94297 Entrez Gene - A searchable database of RefSeq genes. • 90 8674072 UniProtKB/TrEMBL • E1JHL4
Other Crossreferences
	BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GH23934
Linkouts
	DRSC - Results from RNAi screens. • FBgn0260228 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0260228 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0260228 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 8674072 modMine - Data generated by the modENCODE project. • FBgn0260228
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	CG42502 (FlyBase Genome Annotators, 2008) Dromel_CG10570_FBtr0081122_uORF (Hayden and Bosco, 2008)
Name Synonym
Secondary FlyBase IDs
References ( 4 )
Research paper	Hayden and Bosco, 2008, BMC Genomics 9: 61 Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species. [FBrf0204849]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Hayden and Bosco, 2008, BMC Genomics: File 1: Conserved peptide uORF and associated mORF amino acid sequences in Drosophila melanogaster. [FBrf0205942]
FlyBase analysis	FlyBase Genome Annotators, 2008, Changes affecting gene model number or type in release 5.13 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 5.13 of the annotated D.melanogaster genome. [FBrf0205930]