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Gene Dmel\CG42507

General Information
Symbol	Dmel\CG42507	Species	D. melanogaster
Name		Annotation symbol	CG42507
Feature type	protein_coding_gene	FlyBase ID	FBgn0260233
Gene Model Status	Current	Stock availability	1 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	70F4-70F4	Sequence location	3L:14,741,029..14,751,062 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG42507 (FBgn0260233). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-18 hour embryonic stages, during early pupal stages. This gene is annotated by FlyBase as a dicistronic gene, meaning that some or all of its transcripts encode two or more polypeptide-coding open reading frames (ORFs) , with each ORF assigned to a different gene. The distribution of RNA-Seq coverage data amongst the different encoded genes cannot be determined. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult thoracico-abdominal ganglion, larval/adult salivary gland, larval trachea, adult ovary, larval carcass. Gene sequence location is 3L:14741029..14751062.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 70F4-70F4
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG42507 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46 gene_with_dicistronic_mRNA ; SO:0000722
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG42507-RA FBtr0300641  NM_001169972   4441   318 CG42507-RB FBtr0300642  NM_001169973   3806   318
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG42507-PA   FBpp0289866   33.1   318   6.58     NP_001163443   ACZ94714 CG42507-PB   FBpp0289867   33.1   318   6.58     NP_001163444   ACZ94715
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA263731   AA264481   AA391468   AA391921   AA391963   AA439375   AA441047   AA539166   AA539883   AA539920   AA540635   AA541000   AA567145   AA694963   AA950249   AA978387   AA978480   AA990822   AE014296 ACZ94714   AE014296 ACZ94715   AI405143   AI406178   AI533421   BF494869   BF494881   BF501513   BI166164   BI166809   BI170732   BI170936   BI172407   BI212634   BI214112   BI215619   BI237152   BI237153   BI238166   BI238693   BI239029   BI351844   BI353797   BI357668   BI358099   BI361625   BI364895   BI368643   BI369766   BI369830   BI370042   BI370809   BI371918   BI482022   BI565309   BI567571   BI567816   BI575716   BI575732   BI585675   BI604914   BI608210   BI608884   BI610937   BI611117   BI612181   BI615874   BI615959   BI624499   BP550438   BT003649   BT082098   CK135425   CO153190   CO153863   CO186886   CO190463   CO196529   CO263525   CO265376   CO270565   CO272539   CO274814   CO279070   CO281508   CO284351   CO290887   CO290890   CO312331   CO313056   CO316180   CO324762   CO330789   CO337729   CO339699   CO341776   EC053265   EC070846   EC070847   EC083291   EC196468   EC198198   EC198842   EC202566   EC202854   EC210776   EC217801   EC219868   EC222745   EC229927   EC240235   EC244532   EC256453   EC256461   EC260836   EC262476   EC262746
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	E1JI01
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   dorsal ectoderm   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) dorsal epidermis primordium   (Fisher et al., 2012) foregut primordium   (Fisher et al., 2012) hindgut proper primordium   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) somatic muscle primordium   (Fisher et al., 2012) Comment:reported as muscle system primordium visceral muscle primordium   (Fisher et al., 2012) Comment:reported as muscle system primordium tracheal primordium   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic brain   (Fisher et al., 2012) embryonic foregut   (Fisher et al., 2012) embryonic hindgut   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval muscle system   (Fisher et al., 2012) embryonic/larval nervous system   (Fisher et al., 2012) embryonic/larval salivary gland   (Fisher et al., 2012) embryonic/larval somatic muscle   (Fisher et al., 2012) embryonic/larval visceral muscle   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult thoracico-abdominal ganglion, larval/adult salivary gland, larval trachea, adult ovary, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    105 central nervous system, larvae L3    184 central nervous system, pupae P8    59 head, virgin 1-day female    45 head, virgin 4-day female    49 head, virgin 20-day female    32 head, mated 1-day female    44 head, mated 4-day female    56 head, mated 20-day female    31 head, mated 1-day male    63 head, mated 4-day male    61 head, mated 20-day male    66 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    23 digestive system, 1-day adult    18 digestive system, 4-day adult    22 digestive system, 20-day adult    18 fat body, larvae L3 wandering    16 fat body, white prepupae    35 fat body, pupae P8    49 carcass, larvae L3 wandering    86 carcass, 1-day adult    29 carcass, 4-day adult    38 carcass, 20-day adult    31 ovary, virgin 4-day female    66 ovary, mated 4-day female    90 testis, mated 4-day male    44 accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (105) central nervous system, larvae L3  (184) central nervous system, pupae P8  (59) head, virgin 1-day female  (45) head, virgin 4-day female  (49) head, virgin 20-day female  (32) head, mated 1-day female  (44) head, mated 4-day female  (56) head, mated 20-day female  (31) head, mated 1-day male  (63) head, mated 4-day male  (61) head, mated 20-day male  (66) salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    23 digestive system, 1-day adult    18 digestive system, 4-day adult    22 digestive system, 20-day adult    18 fat body, larvae L3 wandering    16 fat body, white prepupae  (35) fat body, pupae P8  (49) carcass, larvae L3 wandering  (86) carcass, 1-day adult  (29) carcass, 4-day adult  (38) carcass, 20-day adult  (31) ovary, virgin 4-day female  (66) ovary, mated 4-day female  (90) testis, mated 4-day male  (44) accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  105 central nervous system, larvae L3  (184) central nervous system, pupae P8    59 head, virgin 1-day female    45 head, virgin 4-day female    49 head, virgin 20-day female    32 head, mated 1-day female    44 head, mated 4-day female    56 head, mated 20-day female    31 head, mated 1-day male    63 head, mated 4-day male    61 head, mated 20-day male    66 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    23 digestive system, 1-day adult    18 digestive system, 4-day adult    22 digestive system, 20-day adult    18 fat body, larvae L3 wandering    16 fat body, white prepupae    35 fat body, pupae P8    49 carcass, larvae L3 wandering    86 carcass, 1-day adult    29 carcass, 4-day adult    38 carcass, 20-day adult    31 ovary, virgin 4-day female    66 ovary, mated 4-day female    90 testis, mated 4-day male    44 accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    105 central nervous system, larvae L3    184 central nervous system, pupae P8    59 head, virgin 1-day female    45 head, virgin 4-day female    49 head, virgin 20-day female    32 head, mated 1-day female    44 head, mated 4-day female    56 head, mated 20-day female    31 head, mated 1-day male    63 head, mated 4-day male    61 head, mated 20-day male    66 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    23 digestive system, 1-day adult    18 digestive system, 4-day adult    22 digestive system, 20-day adult    18 fat body, larvae L3 wandering    16 fat body, white prepupae    35 fat body, pupae P8    49 carcass, larvae L3 wandering    86 carcass, 1-day adult    29 carcass, 4-day adult    38 carcass, 20-day adult    31 ovary, virgin 4-day female    66 ovary, mated 4-day female    90 testis, mated 4-day male    44 accessory gland, mated 4-day male    20 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    105 central nervous system, larvae L3    184 central nervous system, pupae P8    59 head, virgin 1-day female    45 head, virgin 4-day female    49 head, virgin 20-day female    32 head, mated 1-day female    44 head, mated 4-day female    56 head, mated 20-day female    31 head, mated 1-day male    63 head, mated 4-day male    61 head, mated 20-day male    66 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    23 digestive system, 1-day adult    18 digestive system, 4-day adult    22 digestive system, 20-day adult    18 fat body, larvae L3 wandering    16 fat body, white prepupae    35 fat body, pupae P8    49 carcass, larvae L3 wandering    86 carcass, 1-day adult    29 carcass, 4-day adult    38 carcass, 20-day adult    31 ovary, virgin 4-day female    66 ovary, mated 4-day female    90 testis, mated 4-day male    44 accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (105) central nervous system, larvae L3  (184) central nervous system, pupae P8  (59) head, virgin 1-day female  (45) head, virgin 4-day female  (49) head, virgin 20-day female  32 head, mated 1-day female  (44) head, mated 4-day female  (56) head, mated 20-day female  31 head, mated 1-day male  (63) head, mated 4-day male  (61) head, mated 20-day male  (66) salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    23 digestive system, 1-day adult    18 digestive system, 4-day adult    22 digestive system, 20-day adult    18 fat body, larvae L3 wandering    16 fat body, white prepupae  (35) fat body, pupae P8  (49) carcass, larvae L3 wandering  (86) carcass, 1-day adult  29 carcass, 4-day adult  (38) carcass, 20-day adult  31 ovary, virgin 4-day female  (66) ovary, mated 4-day female  (90) testis, mated 4-day male  (44) accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  105 central nervous system, larvae L3  (184) central nervous system, pupae P8    59 head, virgin 1-day female    45 head, virgin 4-day female    49 head, virgin 20-day female    32 head, mated 1-day female    44 head, mated 4-day female    56 head, mated 20-day female    31 head, mated 1-day male    63 head, mated 4-day male    61 head, mated 20-day male    66 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    23 digestive system, 1-day adult    18 digestive system, 4-day adult    22 digestive system, 20-day adult    18 fat body, larvae L3 wandering    16 fat body, white prepupae    35 fat body, pupae P8    49 carcass, larvae L3 wandering    86 carcass, 1-day adult    29 carcass, 4-day adult    38 carcass, 20-day adult    31 ovary, virgin 4-day female    66 ovary, mated 4-day female    90 testis, mated 4-day male    44 accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    105 central nervous system, larvae L3    184 central nervous system, pupae P8    59 head, virgin 1-day female    45 head, virgin 4-day female    49 head, virgin 20-day female    32 head, mated 1-day female    44 head, mated 4-day female    56 head, mated 20-day female    31 head, mated 1-day male    63 head, mated 4-day male    61 head, mated 20-day male    66 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    23 digestive system, 1-day adult    18 digestive system, 4-day adult    22 digestive system, 20-day adult    18 fat body, larvae L3 wandering    16 fat body, white prepupae    35 fat body, pupae P8    49 carcass, larvae L3 wandering    86 carcass, 1-day adult    29 carcass, 4-day adult    38 carcass, 20-day adult    31 ovary, virgin 4-day female    66 ovary, mated 4-day female    90 testis, mated 4-day male    44 accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-18 hour embryonic stages, during early pupal stages. This gene is annotated by FlyBase as a dicistronic gene, meaning that some or all of its transcripts encode two or more polypeptide-coding open reading frames (ORFs) , with each ORF assigned to a different gene. The distribution of RNA-Seq coverage data amongst the different encoded genes cannot be determined. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    45 embryo 02-04hr    81 embryo 04-06hr    69 embryo 06-08hr    116 embryo 08-10hr    95 embryo 10-12hr    110 embryo 12-14hr    90 embryo 14-16hr    80 embryo 16-18hr    54 embryo 18-20hr    47 embryo 20-22hr    39 embryo 22-24hr    31 larva L1    23 larva L2    24 larva L3 12hr old    18 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6    33 larva L3 puffstage 7-9    33 white prepupae new    34 white prepupae 12hr    35 white prepupae 24hr    53 pupae 2d postWPP    36 pupae 3d postWPP    27 pupae 4d postWPP    23 adult male 01day    23 adult male 05day    26 adult male 30day    32 adult female 01day    33 adult female 05day    28 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (45) embryo 02-04hr  (81) embryo 04-06hr  (69) embryo 06-08hr  (116) embryo 08-10hr  (95) embryo 10-12hr  (110) embryo 12-14hr  (90) embryo 14-16hr  (80) embryo 16-18hr  (54) embryo 18-20hr  (47) embryo 20-22hr  (39) embryo 22-24hr  (31) larva L1    23 larva L2    24 larva L3 12hr old    18 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6  (33) larva L3 puffstage 7-9  (33) white prepupae new  (34) white prepupae 12hr  (35) white prepupae 24hr  (53) pupae 2d postWPP  (36) pupae 3d postWPP  (27) pupae 4d postWPP    23 adult male 01day    23 adult male 05day  26 adult male 30day  (32) adult female 01day  (33) adult female 05day  (28) adult female 30day  (31) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    45 embryo 02-04hr    81 embryo 04-06hr    69 embryo 06-08hr  (116) embryo 08-10hr    95 embryo 10-12hr  (110) embryo 12-14hr    90 embryo 14-16hr    80 embryo 16-18hr    54 embryo 18-20hr    47 embryo 20-22hr    39 embryo 22-24hr    31 larva L1    23 larva L2    24 larva L3 12hr old    18 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6    33 larva L3 puffstage 7-9    33 white prepupae new    34 white prepupae 12hr    35 white prepupae 24hr    53 pupae 2d postWPP    36 pupae 3d postWPP    27 pupae 4d postWPP    23 adult male 01day    23 adult male 05day    26 adult male 30day    32 adult female 01day    33 adult female 05day    28 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    45 embryo 02-04hr    81 embryo 04-06hr    69 embryo 06-08hr    116 embryo 08-10hr    95 embryo 10-12hr    110 embryo 12-14hr    90 embryo 14-16hr    80 embryo 16-18hr    54 embryo 18-20hr    47 embryo 20-22hr    39 embryo 22-24hr    31 larva L1    23 larva L2    24 larva L3 12hr old    18 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6    33 larva L3 puffstage 7-9    33 white prepupae new    34 white prepupae 12hr    35 white prepupae 24hr    53 pupae 2d postWPP    36 pupae 3d postWPP    27 pupae 4d postWPP    23 adult male 01day    23 adult male 05day    26 adult male 30day    32 adult female 01day    33 adult female 05day    28 adult female 30day    31 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    45 embryo 02-04hr    81 embryo 04-06hr    69 embryo 06-08hr    116 embryo 08-10hr    95 embryo 10-12hr    110 embryo 12-14hr    90 embryo 14-16hr    80 embryo 16-18hr    54 embryo 18-20hr    47 embryo 20-22hr    39 embryo 22-24hr    31 larva L1    23 larva L2    24 larva L3 12hr old    18 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6    33 larva L3 puffstage 7-9    33 white prepupae new    34 white prepupae 12hr    35 white prepupae 24hr    53 pupae 2d postWPP    36 pupae 3d postWPP    27 pupae 4d postWPP    23 adult male 01day    23 adult male 05day    26 adult male 30day    32 adult female 01day    33 adult female 05day    28 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (45) embryo 02-04hr  (81) embryo 04-06hr  (69) embryo 06-08hr  (116) embryo 08-10hr  (95) embryo 10-12hr  (110) embryo 12-14hr  (90) embryo 14-16hr  (80) embryo 16-18hr  (54) embryo 18-20hr  (47) embryo 20-22hr  (39) embryo 22-24hr  31 larva L1    23 larva L2    24 larva L3 12hr old    18 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6  (33) larva L3 puffstage 7-9  (33) white prepupae new  (34) white prepupae 12hr  (35) white prepupae 24hr  (53) pupae 2d postWPP  (36) pupae 3d postWPP  27 pupae 4d postWPP    23 adult male 01day    23 adult male 05day  26 adult male 30day  32 adult female 01day  (33) adult female 05day  28 adult female 30day  31 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    45 embryo 02-04hr    81 embryo 04-06hr    69 embryo 06-08hr  116 embryo 08-10hr    95 embryo 10-12hr  110 embryo 12-14hr    90 embryo 14-16hr    80 embryo 16-18hr    54 embryo 18-20hr    47 embryo 20-22hr    39 embryo 22-24hr    31 larva L1    23 larva L2    24 larva L3 12hr old    18 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6    33 larva L3 puffstage 7-9    33 white prepupae new    34 white prepupae 12hr    35 white prepupae 24hr    53 pupae 2d postWPP    36 pupae 3d postWPP    27 pupae 4d postWPP    23 adult male 01day    23 adult male 05day    26 adult male 30day    32 adult female 01day    33 adult female 05day    28 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    45 embryo 02-04hr    81 embryo 04-06hr    69 embryo 06-08hr    116 embryo 08-10hr    95 embryo 10-12hr    110 embryo 12-14hr    90 embryo 14-16hr    80 embryo 16-18hr    54 embryo 18-20hr    47 embryo 20-22hr    39 embryo 22-24hr    31 larva L1    23 larva L2    24 larva L3 12hr old    18 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6    33 larva L3 puffstage 7-9    33 white prepupae new    34 white prepupae 12hr    35 white prepupae 24hr    53 pupae 2d postWPP    36 pupae 3d postWPP    27 pupae 4d postWPP    23 adult male 01day    23 adult male 05day    26 adult male 30day    32 adult female 01day    33 adult female 05day    28 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    91 Schneider line 2 Sg4    65 embryonic 1182-4H    66 embryonic GM2    40 embryonic Kc167    15 embryonic S1    90 embryonic S3    70 leg disc CME L1    89 wing disc CME-W2    37 wing disc ML-DmD8    57 wing disc ML-DmD9    102 wing disc ML-DmD16-c3    88 wing disc ML-DmD21    154 wing disc ML-DmD32    67 haltere disc ML-DmD17-c3    92 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    34 mixed discs ML-DmD4-c1    85 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    46 tumorous blood cells mbn2    41 ovary fGS/OSS    245 ovary OSC    74 ovary OSS    86 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (91) Schneider line 2 Sg4  (65) embryonic 1182-4H  (66) embryonic GM2  (40) embryonic Kc167    15 embryonic S1  (90) embryonic S3  (70) leg disc CME L1  (89) wing disc CME-W2  (37) wing disc ML-DmD8  (57) wing disc ML-DmD9  (102) wing disc ML-DmD16-c3  (88) wing disc ML-DmD21  (154) wing disc ML-DmD32  (67) haltere disc ML-DmD17-c3  (92) eye-antennal disc ML-DmD11  (54) antennal disc ML-DmD20-c5  (34) mixed discs ML-DmD4-c1  (85) CNS ML-DmBG1-c1  (71) CNS ML-DmBG2-c2  (46) tumorous blood cells mbn2  (41) ovary fGS/OSS  (245) ovary OSC  (74) ovary OSS  (86) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    91 Schneider line 2 Sg4    65 embryonic 1182-4H    66 embryonic GM2    40 embryonic Kc167    15 embryonic S1    90 embryonic S3    70 leg disc CME L1    89 wing disc CME-W2    37 wing disc ML-DmD8    57 wing disc ML-DmD9  102 wing disc ML-DmD16-c3    88 wing disc ML-DmD21  (154) wing disc ML-DmD32    67 haltere disc ML-DmD17-c3    92 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    34 mixed discs ML-DmD4-c1    85 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    46 tumorous blood cells mbn2    41 ovary fGS/OSS  (245) ovary OSC    74 ovary OSS    86 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    91 Schneider line 2 Sg4    65 embryonic 1182-4H    66 embryonic GM2    40 embryonic Kc167    15 embryonic S1    90 embryonic S3    70 leg disc CME L1    89 wing disc CME-W2    37 wing disc ML-DmD8    57 wing disc ML-DmD9    102 wing disc ML-DmD16-c3    88 wing disc ML-DmD21    154 wing disc ML-DmD32    67 haltere disc ML-DmD17-c3    92 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    34 mixed discs ML-DmD4-c1    85 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    46 tumorous blood cells mbn2    41 ovary fGS/OSS    245 ovary OSC    74 ovary OSS    86 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    91 Schneider line 2 Sg4    65 embryonic 1182-4H    66 embryonic GM2    40 embryonic Kc167    15 embryonic S1    90 embryonic S3    70 leg disc CME L1    89 wing disc CME-W2    37 wing disc ML-DmD8    57 wing disc ML-DmD9    102 wing disc ML-DmD16-c3    88 wing disc ML-DmD21    154 wing disc ML-DmD32    67 haltere disc ML-DmD17-c3    92 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    34 mixed discs ML-DmD4-c1    85 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    46 tumorous blood cells mbn2    41 ovary fGS/OSS    245 ovary OSC    74 ovary OSS    86 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (91) Schneider line 2 Sg4  (65) embryonic 1182-4H  (66) embryonic GM2  (40) embryonic Kc167    15 embryonic S1  (90) embryonic S3  (70) leg disc CME L1  (89) wing disc CME-W2  (37) wing disc ML-DmD8  (57) wing disc ML-DmD9  (102) wing disc ML-DmD16-c3  (88) wing disc ML-DmD21  (154) wing disc ML-DmD32  (67) haltere disc ML-DmD17-c3  (92) eye-antennal disc ML-DmD11  (54) antennal disc ML-DmD20-c5  (34) mixed discs ML-DmD4-c1  (85) CNS ML-DmBG1-c1  (71) CNS ML-DmBG2-c2  (46) tumorous blood cells mbn2  (41) ovary fGS/OSS  (245) ovary OSC  (74) ovary OSS  (86) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    91 Schneider line 2 Sg4    65 embryonic 1182-4H    66 embryonic GM2    40 embryonic Kc167    15 embryonic S1    90 embryonic S3    70 leg disc CME L1    89 wing disc CME-W2    37 wing disc ML-DmD8    57 wing disc ML-DmD9  102 wing disc ML-DmD16-c3    88 wing disc ML-DmD21  (154) wing disc ML-DmD32    67 haltere disc ML-DmD17-c3    92 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    34 mixed discs ML-DmD4-c1    85 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    46 tumorous blood cells mbn2    41 ovary fGS/OSS  (245) ovary OSC    74 ovary OSS    86 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    91 Schneider line 2 Sg4    65 embryonic 1182-4H    66 embryonic GM2    40 embryonic Kc167    15 embryonic S1    90 embryonic S3    70 leg disc CME L1    89 wing disc CME-W2    37 wing disc ML-DmD8    57 wing disc ML-DmD9    102 wing disc ML-DmD16-c3    88 wing disc ML-DmD21    154 wing disc ML-DmD32    67 haltere disc ML-DmD17-c3    92 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    34 mixed discs ML-DmD4-c1    85 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    46 tumorous blood cells mbn2    41 ovary fGS/OSS    245 ovary OSC    74 ovary OSS    86 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    94 cold shock, 4-day adult    66 heat shock, 4-day adult    44 Cadmium 50 mM 6 hrs, larvae L3    28 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    45 Cadmium 100 mM 48 hrs, 4-day adult    77 Copper 0.5 mM 12 hrs, larvae L3    63 Copper 15 mM 48 hrs, 4-day adult    47 Zinc 5 mM 12 hrs, larvae L3    55 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    64 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    20 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    72 Caffeine 25 mg/ml 48 hrs, 4-day adult    78 Paraquat 5 mM 48 hrs, 4-day adult    65 Paraquat 10 mM 48 hrs, 4-day adult    57 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    23 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (94) cold shock, 4-day adult  (66) heat shock, 4-day adult  (44) Cadmium 50 mM 6 hrs, larvae L3  (28) Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult  (45) Cadmium 100 mM 48 hrs, 4-day adult  (77) Copper 0.5 mM 12 hrs, larvae L3  (63) Copper 15 mM 48 hrs, 4-day adult  (47) Zinc 5 mM 12 hrs, larvae L3  (55) Zinc 4.5 mM 48 hrs, 4-day adult  (56) Ethanol 2.5% 3 hrs, larvae L3  (64) Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3  26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    20 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (72) Caffeine 25 mg/ml 48 hrs, 4-day adult  (78) Paraquat 5 mM 48 hrs, 4-day adult  (65) Paraquat 10 mM 48 hrs, 4-day adult  (57) Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    23 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    94 cold shock, 4-day adult    66 heat shock, 4-day adult    44 Cadmium 50 mM 6 hrs, larvae L3    28 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    45 Cadmium 100 mM 48 hrs, 4-day adult    77 Copper 0.5 mM 12 hrs, larvae L3    63 Copper 15 mM 48 hrs, 4-day adult    47 Zinc 5 mM 12 hrs, larvae L3    55 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    64 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    20 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    72 Caffeine 25 mg/ml 48 hrs, 4-day adult    78 Paraquat 5 mM 48 hrs, 4-day adult    65 Paraquat 10 mM 48 hrs, 4-day adult    57 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    23 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    94 cold shock, 4-day adult    66 heat shock, 4-day adult    44 Cadmium 50 mM 6 hrs, larvae L3    28 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    45 Cadmium 100 mM 48 hrs, 4-day adult    77 Copper 0.5 mM 12 hrs, larvae L3    63 Copper 15 mM 48 hrs, 4-day adult    47 Zinc 5 mM 12 hrs, larvae L3    55 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    64 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    20 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    72 Caffeine 25 mg/ml 48 hrs, 4-day adult    78 Paraquat 5 mM 48 hrs, 4-day adult    65 Paraquat 10 mM 48 hrs, 4-day adult    57 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    23 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    94 cold shock, 4-day adult    66 heat shock, 4-day adult    44 Cadmium 50 mM 6 hrs, larvae L3    28 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    45 Cadmium 100 mM 48 hrs, 4-day adult    77 Copper 0.5 mM 12 hrs, larvae L3    63 Copper 15 mM 48 hrs, 4-day adult    47 Zinc 5 mM 12 hrs, larvae L3    55 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    64 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    20 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    72 Caffeine 25 mg/ml 48 hrs, 4-day adult    78 Paraquat 5 mM 48 hrs, 4-day adult    65 Paraquat 10 mM 48 hrs, 4-day adult    57 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    23 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (94) cold shock, 4-day adult  (66) heat shock, 4-day adult  (44) Cadmium 50 mM 6 hrs, larvae L3  28 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult  (45) Cadmium 100 mM 48 hrs, 4-day adult  (77) Copper 0.5 mM 12 hrs, larvae L3  (63) Copper 15 mM 48 hrs, 4-day adult  (47) Zinc 5 mM 12 hrs, larvae L3  (55) Zinc 4.5 mM 48 hrs, 4-day adult  (56) Ethanol 2.5% 3 hrs, larvae L3  (64) Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3  26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    20 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (72) Caffeine 25 mg/ml 48 hrs, 4-day adult  (78) Paraquat 5 mM 48 hrs, 4-day adult  (65) Paraquat 10 mM 48 hrs, 4-day adult  (57) Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    23 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    94 cold shock, 4-day adult    66 heat shock, 4-day adult    44 Cadmium 50 mM 6 hrs, larvae L3    28 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    45 Cadmium 100 mM 48 hrs, 4-day adult    77 Copper 0.5 mM 12 hrs, larvae L3    63 Copper 15 mM 48 hrs, 4-day adult    47 Zinc 5 mM 12 hrs, larvae L3    55 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    64 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    20 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    72 Caffeine 25 mg/ml 48 hrs, 4-day adult    78 Paraquat 5 mM 48 hrs, 4-day adult    65 Paraquat 10 mM 48 hrs, 4-day adult    57 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    23 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    94 cold shock, 4-day adult    66 heat shock, 4-day adult    44 Cadmium 50 mM 6 hrs, larvae L3    28 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    45 Cadmium 100 mM 48 hrs, 4-day adult    77 Copper 0.5 mM 12 hrs, larvae L3    63 Copper 15 mM 48 hrs, 4-day adult    47 Zinc 5 mM 12 hrs, larvae L3    55 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    64 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    20 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    72 Caffeine 25 mg/ml 48 hrs, 4-day adult    78 Paraquat 5 mM 48 hrs, 4-day adult    65 Paraquat 10 mM 48 hrs, 4-day adult    57 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    23 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_27 mE1_20_mRNA_expression_cluster_05
External Data & Images
Linkouts	BDGP expression data • LD41963 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0260233
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG42507 Class Mutagen Stocks Known lesion CG42507MI04612 1 -- CG42507DG30805 0 --
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG42507 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}TrlMI04612 NA P{wHy}TrlDG30805 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	gene_with_dicistronic_mRNA (FlyBase Genome Annotators, 2008) nuclear_gene (FlyBase Genome Annotators, 2008) protein_coding_gene (FlyBase Genome Annotators, 2008)
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG42507 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0260233
Orthologs
OrthoDB Orthologs (7) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6JDHTK Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6JDHTK)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG42507     Drosophila simulans   Dsim\GD12605     Drosophila sechellia   Dsec\GM24534     Drosophila erecta   Dere\GG13713     Drosophila yakuba   Dyak\GE20007     Drosophila ananassae   Dana\GF25186     Drosophila pseudoobscura pseudoobscura   Dpse\GA23657
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 1 )
Bloomington	41479 y1 w*; Mi{MIC}TrlMI04612 CG42507MI04612
Genomic Clones ( 2 )
	BACR11B23 BACR22J22 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 111 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT11176
Other clones	MIP04022
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT03635 AT03649 AT16872 GH25068 GH26394 GM01124 GM01856 GM16361 GM25166 LD06820 LD08148 LD10115 LD10830 LD10903 LD13928 LD15819 LD17265 LD19172 LD19220 LD20389 LD20745 LD27443 LD28739 LD30706 LD34729 RE06204 RE07031 RE12285 RE12568 RE14880 RE17756 RE19823 RE22185 RE33325 RE33326 RE34556 RE35210 RE35413 RE44204 RE44770 RE45928 RE50088 RE54649 RE56054 RE56143 RE56411 RE57561 RE58946 RE64662 RH12393 RH13601 RH16962 RH17243 RH25306 RH32014 RH32034 RH37995 RH38509 RH40587 RH45876 RH63056 RH64065 RH70416 SD05224
Other clones	8849 13701 18852 32014 42391 51459 105651 109031 214317.50 214385.54 522148 522892 569581 CK01.28B.C2 CK01.59C.E8 CK01.96C.G9 CK01.106B.H7 CK01.110A.H1 CK01.117A.H3 EC053265 EK005423 EK024341 EK048252 EK075502 EK075506 EK088732 EK099329 EK107538 EK115539 EK133458 EK142516 EK157332 EK165848 EK194803 EK228505 EK231038 EK263862 EK296203 EN01444 EN02959 EN15162 EP13131 EP22336 FGM207B07 RH45758
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0260233 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 8674092
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	One or more of the processed transcripts for this gene contain(s) two non-overlapping open reading frames (ORFs). The non-overlapping ORFs are represented by Trl and CG42507. (FlyBase Genome Annotators, 2008)
Other Comments
	New annotation (CG42507) in release 5.13 of the genome annotation. (FlyBase Genome Annotators, 2008)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_001169972 NM_001169973 RefSeq (Proteins) • NP_001163443 NP_001163444 DDBJ / EMBL / GenBank • ACZ94714 ACZ94715 Entrez Gene - A searchable database of RefSeq genes. • 8674092 UniProtKB/TrEMBL • E1JI01
Other Crossreferences
	BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD41963
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0260233 DRSC - Results from RNAi screens. • FBgn0260233 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0260233 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0260233 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 8674092 modMine - Data generated by the modENCODE project. • FBgn0260233
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG42507 (FlyBase Genome Annotators, 2008)
Name Synonym
Secondary FlyBase IDs
References ( 8 )
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979]
Personal communication to FlyBase	Bellen, 2012.9.7, set1005.xml set1005.xml [FBrf0219418] Brody, 2009.03, Possible annotation changes flagged by EvoPrinting Possible annotation changes flagged by EvoPrinting [FBrf0207435] Myrick et al., 2008.12.2, Alignment of P{wHy} collection to current genome. Alignment of P{wHy} collection to current genome. [FBrf0206273]
FlyBase analysis	FlyBase Genome Annotators, 2008, Changes affecting gene model number or type in release 5.13 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 5.13 of the annotated D.melanogaster genome. [FBrf0205930] FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]