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Gene Dmel\gatA

General Information
Symbol	Dmel\gatA	Species	D. melanogaster
Name	glutamyl-tRNA amidotransferase subunit A	Annotation symbol	CG6007
Feature type	protein_coding_gene	FlyBase ID	FBgn0260779
Gene Model Status	Current	Stock availability	4 publicly available
Also Known As	bene
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	91E4-91F2	Sequence location	3R:14,851,896..14,854,558 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene glutamyl-tRNA amidotransferase subunit A is referred to in FlyBase by the symbol Dmel\gatA (CG6007, FBgn0260779). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity. There is experimental evidence that it is involved in the biological process: oogenesis; karyosome formation. 15 alleles are reported. The phenotypes of these alleles are annotated with: embryonic/larval salivary gland; imaginal disc; embryonic/larval brain. It has one annotated transcript and one annotated polypeptide. Protein features are: Amidase; Amidase signature domain; Glutamyl-tRNA(Gln) amidotransferase A subunit. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult thoracico-abdominal ganglion, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1628959_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of gatA. Gene sequence location is 3R:14851896..14854558.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 91E4-91F2   Limits computationally determined from genome sequence between P{PZ}sprd05284 and P{PZ}cdi07013&P{lacW}nosj3B6; Left limit from in situ hybridisation (FBrf0099762) Right limit from in situ hybridisation (FBrf0099762)
Experimentally Determined Cytological Location
Cytogenetic map Notes References 91D1-91F2   Mapping based on deficiency analysis (details unspecified). (determined by in situ hybridisation)   (Morris et al., 2003) 91E-91E     (Misener, 1999.7.19) 91F1-91F2   (determined by in situ hybridisation)   (Szeged Stock Center, 1998-) 91F1-91F2   (determined by in situ hybridisation)   (Deak et al., 1997)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\gatA for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) gatA-RA FBtr0083718  NM_142518   1640   508
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein gatA-PA   FBpp0083132   55.8   508   6.67     NP_650775   AAF55624
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Amidase (IPR000120) Glutamyl-tRNA(Gln) amidotransferase A subunit (IPR004412) Amidase signature domain (IPR023631)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA140796   AA141974   AE014297 AAF55624   AF170829 AAD49738   AI541998   AI544364   AI544374   AW944538   AY061613 AAL29161   BI213669   BI355446   BI581424   BI582026   BI588782   BI607659   BI638869   BP547790   BT133209   CO316137   EC065411   GH748297   GH750831   GH751302   GH757004   GH770727   GH771963   GH774655   GH777380   GH778030   GH792610   GH793810   GH797080   GH801847   GH802760   GH804200   GH807676   GH807759   GH812373   GH818059   GH820523   GH822511   GH825307   GH826065   GH832866   GH833826   GH836370   GH839315   GH841113   GH844195   GH845232   GH845779   GH846055   GH846615   GH847366   GH849759   GH852580   GH853670   GH856886   GH858101   GH860163   GH860200   GH862558   GH862679   GH867934   GH868314   GH871742   GH884709   GH886675   GH886685   GH887251   GH900596   GH901999   GH902096   GH902610   GH909849   GH914971   GH918826   GH926448   GH926986   GH928951   GH932583   GH936602
UniProtKB/Swiss-Prot	Q9VE09
UniProtKB/TrEMBL	Q7KLE9
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References point mutation gatA[JV87]-1 3R:14,854,262..14,854,262 na_change=G14854262T reported_na_change=G159T pr_change=Q53H | gatA-PA reported_pr_change=Q53H comment=One of three missense mutations associated with this allele. (Liao et al., 2006) point mutation gatA[JV87]-2 3R:14,854,249..14,854,249 na_change=G14854249T reported_na_change=T172G pr_change=A58S | gatA-PA reported_pr_change=A58S comment=One of three missense mutations associated with this allele. (Liao et al., 2006) point mutation gatA[JV87]-3 3R:14,854,201..14,854,201 na_change=G14854201A reported_na_change=G220A pr_change=V74I | gatA-PA reported_pr_change=V74I comment=One of three missense mutations associated with this allele. (Liao et al., 2006)
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
mitochondrion inferred from direct assay (Liao et al., 2006)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult thoracico-abdominal ganglion, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    79.2 Larval Midgut    31.5 Larval Hindgut    54.1 Larval Malpighian Tubules    29.1 Larval Fat Body    40.2 Larval Salivary Gland    51 Larval Trachea    51.95 Larval Carcass    32.525 Adult Head    44.6 Adult Eye    32.525 Adult Brain    72.8 Adult Thoracic-Abdominal Ganglion    104 Adult Crop    55.7 Adult Midgut    34.2 Adult Hindgut    47.6 Adult Malpighian Tubules    36.4 Adult Fat Body    40.9 Adult Salivary Gland    57.6 Adult Heart    32.45 Adult VirginFemale Spermatheca    50 Adult InseminatedFemale Spermatheca    68.1 Adult Ovary    107.4 Adult Testis    89.9 Adult Male Accessory Gland    31.7 Adult Carcass    50.3 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    79.2 Larval Midgut    31.5 Larval Hindgut    54.1 Larval Malpighian Tubules    29.1 Larval Fat Body    40.2 Larval Salivary Gland    51 Larval Trachea    51.95 Larval Carcass    32.525 Adult Head    44.6 Adult Eye    32.525 Adult Brain    72.8 Adult Thoracic-Abdominal Ganglion    104 Adult Crop    55.7 Adult Midgut    34.2 Adult Hindgut    47.6 Adult Malpighian Tubules    36.4 Adult Fat Body    40.9 Adult Salivary Gland    57.6 Adult Heart    32.45 Adult VirginFemale Spermatheca    50 Adult InseminatedFemale Spermatheca    68.1 Adult Ovary    107.4 Adult Testis    89.9 Adult Male Accessory Gland    31.7 Adult Carcass    50.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    79.2 Larval Midgut    31.5 Larval Hindgut    54.1 Larval Malpighian Tubules    29.1 Larval Fat Body    40.2 Larval Salivary Gland    51 Larval Trachea    51.95 Larval Carcass    32.525 Adult Head    44.6 Adult Eye    32.525 Adult Brain    72.8 Adult Thoracic-Abdominal Ganglion    104 Adult Crop    55.7 Adult Midgut    34.2 Adult Hindgut    47.6 Adult Malpighian Tubules    36.4 Adult Fat Body    40.9 Adult Salivary Gland    57.6 Adult Heart    32.45 Adult VirginFemale Spermatheca    50 Adult InseminatedFemale Spermatheca    68.1 Adult Ovary    107.4 Adult Testis    89.9 Adult Male Accessory Gland    31.7 Adult Carcass    50.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    79.2 Larval Midgut    31.5 Larval Hindgut    54.1 Larval Malpighian Tubules    29.1 Larval Fat Body    40.2 Larval Salivary Gland    51 Larval Trachea    51.95 Larval Carcass    32.525 Adult Head    44.6 Adult Eye    32.525 Adult Brain    72.8 Adult Thoracic-Abdominal Ganglion    104 Adult Crop    55.7 Adult Midgut    34.2 Adult Hindgut    47.6 Adult Malpighian Tubules    36.4 Adult Fat Body    40.9 Adult Salivary Gland    57.6 Adult Heart    32.45 Adult VirginFemale Spermatheca    50 Adult InseminatedFemale Spermatheca    68.1 Adult Ovary    107.4 Adult Testis    89.9 Adult Male Accessory Gland    31.7 Adult Carcass    50.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    79.2 Larval Midgut    31.5 Larval Hindgut    54.1 Larval Malpighian Tubules    29.1 Larval Fat Body    40.2 Larval Salivary Gland    51 Larval Trachea    51.95 Larval Carcass    32.525 Adult Head    44.6 Adult Eye    32.525 Adult Brain    72.8 Adult Thoracic-Abdominal Ganglion    104 Adult Crop    55.7 Adult Midgut    34.2 Adult Hindgut    47.6 Adult Malpighian Tubules    36.4 Adult Fat Body    40.9 Adult Salivary Gland    57.6 Adult Heart    32.45 Adult VirginFemale Spermatheca    50 Adult InseminatedFemale Spermatheca    68.1 Adult Ovary    107.4 Adult Testis    89.9 Adult Male Accessory Gland    31.7 Adult Carcass    50.3 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    79.2 Larval Midgut    31.5 Larval Hindgut    54.1 Larval Malpighian Tubules    29.1 Larval Fat Body    40.2 Larval Salivary Gland    51 Larval Trachea    51.95 Larval Carcass    32.525 Adult Head    44.6 Adult Eye    32.525 Adult Brain    72.8 Adult Thoracic-Abdominal Ganglion    104 Adult Crop    55.7 Adult Midgut    34.2 Adult Hindgut    47.6 Adult Malpighian Tubules    36.4 Adult Fat Body    40.9 Adult Salivary Gland    57.6 Adult Heart    32.45 Adult VirginFemale Spermatheca    50 Adult InseminatedFemale Spermatheca    68.1 Adult Ovary    107.4 Adult Testis    89.9 Adult Male Accessory Gland    31.7 Adult Carcass    50.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    79.2 Larval Midgut    31.5 Larval Hindgut    54.1 Larval Malpighian Tubules    29.1 Larval Fat Body    40.2 Larval Salivary Gland    51 Larval Trachea    51.95 Larval Carcass    32.525 Adult Head    44.6 Adult Eye    32.525 Adult Brain    72.8 Adult Thoracic-Abdominal Ganglion    104 Adult Crop    55.7 Adult Midgut    34.2 Adult Hindgut    47.6 Adult Malpighian Tubules    36.4 Adult Fat Body    40.9 Adult Salivary Gland    57.6 Adult Heart    32.45 Adult VirginFemale Spermatheca    50 Adult InseminatedFemale Spermatheca    68.1 Adult Ovary    107.4 Adult Testis    89.9 Adult Male Accessory Gland    31.7 Adult Carcass    50.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    79.2 Larval Midgut    31.5 Larval Hindgut    54.1 Larval Malpighian Tubules    29.1 Larval Fat Body    40.2 Larval Salivary Gland    51 Larval Trachea    51.95 Larval Carcass    32.525 Adult Head    44.6 Adult Eye    32.525 Adult Brain    72.8 Adult Thoracic-Abdominal Ganglion    104 Adult Crop    55.7 Adult Midgut    34.2 Adult Hindgut    47.6 Adult Malpighian Tubules    36.4 Adult Fat Body    40.9 Adult Salivary Gland    57.6 Adult Heart    32.45 Adult VirginFemale Spermatheca    50 Adult InseminatedFemale Spermatheca    68.1 Adult Ovary    107.4 Adult Testis    89.9 Adult Male Accessory Gland    31.7 Adult Carcass    50.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    44.6   NA  Eye    32.525   NA  Brain    72.8   79.2  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    104   NA  Crop    55.7   31.5  Midgut    34.2   54.1  Hindgut    47.6   29.1  Malpighian Tubules    36.4   40.2  Fat Body    no informative data   51  Salivary Gland    57.6   NA  Heart    32.45   51.95  Trachea    NA   NA  VirginFemale Spermatheca    no informative data   NA  InseminatedFemale Spermatheca    68.1   NA  Ovary    107.4   NA  Testis    89.9   NA  Male Accessory Gland    31.7   32.525  Carcass    50.3 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    3 central nervous system, pupae P8    4 head, virgin 1-day female    4 head, virgin 4-day female    2 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    4 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    12 ovary, mated 4-day female    8 testis, mated 4-day male    21 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    3 central nervous system, pupae P8    4 head, virgin 1-day female    4 head, virgin 4-day female    2 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    4 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    12 ovary, mated 4-day female    8 testis, mated 4-day male    21 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    3 central nervous system, pupae P8    4 head, virgin 1-day female    4 head, virgin 4-day female    2 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    4 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    12 ovary, mated 4-day female    8 testis, mated 4-day male    21 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    3 central nervous system, pupae P8    4 head, virgin 1-day female    4 head, virgin 4-day female    2 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    4 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    12 ovary, mated 4-day female    8 testis, mated 4-day male    21 accessory gland, mated 4-day male    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    3 central nervous system, pupae P8    4 head, virgin 1-day female    4 head, virgin 4-day female    2 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    4 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    12 ovary, mated 4-day female    8 testis, mated 4-day male    21 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    3 central nervous system, pupae P8    4 head, virgin 1-day female    4 head, virgin 4-day female    2 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    4 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    12 ovary, mated 4-day female    8 testis, mated 4-day male    21 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    3 central nervous system, pupae P8    4 head, virgin 1-day female    4 head, virgin 4-day female    2 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    4 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    12 ovary, mated 4-day female    8 testis, mated 4-day male    21 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    3 central nervous system, pupae P8    4 head, virgin 1-day female    4 head, virgin 4-day female    2 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    4 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    12 ovary, mated 4-day female    8 testis, mated 4-day male    21 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    17 embryo 02-04hr    12 embryo 04-06hr    3 embryo 06-08hr    3 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    6 embryo 14-16hr    9 embryo 16-18hr    8 embryo 18-20hr    8 embryo 20-22hr    7 embryo 22-24hr    7 larva L1    11 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    5 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    10 pupae 3d postWPP    9 pupae 4d postWPP    7 adult male 01day    7 adult male 05day    9 adult male 30day    11 adult female 01day    12 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    17 embryo 02-04hr    12 embryo 04-06hr    3 embryo 06-08hr    3 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    6 embryo 14-16hr    9 embryo 16-18hr    8 embryo 18-20hr    8 embryo 20-22hr    7 embryo 22-24hr    7 larva L1    11 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    5 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    10 pupae 3d postWPP    9 pupae 4d postWPP    7 adult male 01day    7 adult male 05day    9 adult male 30day    11 adult female 01day    12 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    17 embryo 02-04hr    12 embryo 04-06hr    3 embryo 06-08hr    3 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    6 embryo 14-16hr    9 embryo 16-18hr    8 embryo 18-20hr    8 embryo 20-22hr    7 embryo 22-24hr    7 larva L1    11 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    5 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    10 pupae 3d postWPP    9 pupae 4d postWPP    7 adult male 01day    7 adult male 05day    9 adult male 30day    11 adult female 01day    12 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    17 embryo 02-04hr    12 embryo 04-06hr    3 embryo 06-08hr    3 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    6 embryo 14-16hr    9 embryo 16-18hr    8 embryo 18-20hr    8 embryo 20-22hr    7 embryo 22-24hr    7 larva L1    11 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    5 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    10 pupae 3d postWPP    9 pupae 4d postWPP    7 adult male 01day    7 adult male 05day    9 adult male 30day    11 adult female 01day    12 adult female 05day    12 adult female 30day    13 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    17 embryo 02-04hr    12 embryo 04-06hr    3 embryo 06-08hr    3 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    6 embryo 14-16hr    9 embryo 16-18hr    8 embryo 18-20hr    8 embryo 20-22hr    7 embryo 22-24hr    7 larva L1    11 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    5 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    10 pupae 3d postWPP    9 pupae 4d postWPP    7 adult male 01day    7 adult male 05day    9 adult male 30day    11 adult female 01day    12 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    17 embryo 02-04hr    12 embryo 04-06hr    3 embryo 06-08hr    3 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    6 embryo 14-16hr    9 embryo 16-18hr    8 embryo 18-20hr    8 embryo 20-22hr    7 embryo 22-24hr    7 larva L1    11 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    5 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    10 pupae 3d postWPP    9 pupae 4d postWPP    7 adult male 01day    7 adult male 05day    9 adult male 30day    11 adult female 01day    12 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    17 embryo 02-04hr    12 embryo 04-06hr    3 embryo 06-08hr    3 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    6 embryo 14-16hr    9 embryo 16-18hr    8 embryo 18-20hr    8 embryo 20-22hr    7 embryo 22-24hr    7 larva L1    11 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    5 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    10 pupae 3d postWPP    9 pupae 4d postWPP    7 adult male 01day    7 adult male 05day    9 adult male 30day    11 adult female 01day    12 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    17 embryo 02-04hr    12 embryo 04-06hr    3 embryo 06-08hr    3 embryo 08-10hr    4 embryo 10-12hr    7 embryo 12-14hr    6 embryo 14-16hr    9 embryo 16-18hr    8 embryo 18-20hr    8 embryo 20-22hr    7 embryo 22-24hr    7 larva L1    11 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    5 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    10 pupae 3d postWPP    9 pupae 4d postWPP    7 adult male 01day    7 adult male 05day    9 adult male 30day    11 adult female 01day    12 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    19 Schneider line 2 Sg4    15 embryonic 1182-4H    14 embryonic GM2    15 embryonic Kc167    11 embryonic S1    20 embryonic S3    14 leg disc CME L1    10 wing disc CME-W2    14 wing disc ML-DmD8    8 wing disc ML-DmD9    14 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    13 antennal disc ML-DmD20-c5    22 mixed discs ML-DmD4-c1    8 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    13 ovary fGS/OSS    5 ovary OSC    9 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    19 Schneider line 2 Sg4    15 embryonic 1182-4H    14 embryonic GM2    15 embryonic Kc167    11 embryonic S1    20 embryonic S3    14 leg disc CME L1    10 wing disc CME-W2    14 wing disc ML-DmD8    8 wing disc ML-DmD9    14 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    13 antennal disc ML-DmD20-c5    22 mixed discs ML-DmD4-c1    8 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    13 ovary fGS/OSS    5 ovary OSC    9 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    19 Schneider line 2 Sg4    15 embryonic 1182-4H    14 embryonic GM2    15 embryonic Kc167    11 embryonic S1    20 embryonic S3    14 leg disc CME L1    10 wing disc CME-W2    14 wing disc ML-DmD8    8 wing disc ML-DmD9    14 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    13 antennal disc ML-DmD20-c5    22 mixed discs ML-DmD4-c1    8 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    13 ovary fGS/OSS    5 ovary OSC    9 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    19 Schneider line 2 Sg4    15 embryonic 1182-4H    14 embryonic GM2    15 embryonic Kc167    11 embryonic S1    20 embryonic S3    14 leg disc CME L1    10 wing disc CME-W2    14 wing disc ML-DmD8    8 wing disc ML-DmD9    14 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    13 antennal disc ML-DmD20-c5    22 mixed discs ML-DmD4-c1    8 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    13 ovary fGS/OSS    5 ovary OSC    9 ovary OSS    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    19 Schneider line 2 Sg4    15 embryonic 1182-4H    14 embryonic GM2    15 embryonic Kc167    11 embryonic S1    20 embryonic S3    14 leg disc CME L1    10 wing disc CME-W2    14 wing disc ML-DmD8    8 wing disc ML-DmD9    14 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    13 antennal disc ML-DmD20-c5    22 mixed discs ML-DmD4-c1    8 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    13 ovary fGS/OSS    5 ovary OSC    9 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    19 Schneider line 2 Sg4    15 embryonic 1182-4H    14 embryonic GM2    15 embryonic Kc167    11 embryonic S1    20 embryonic S3    14 leg disc CME L1    10 wing disc CME-W2    14 wing disc ML-DmD8    8 wing disc ML-DmD9    14 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    13 antennal disc ML-DmD20-c5    22 mixed discs ML-DmD4-c1    8 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    13 ovary fGS/OSS    5 ovary OSC    9 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    19 Schneider line 2 Sg4    15 embryonic 1182-4H    14 embryonic GM2    15 embryonic Kc167    11 embryonic S1    20 embryonic S3    14 leg disc CME L1    10 wing disc CME-W2    14 wing disc ML-DmD8    8 wing disc ML-DmD9    14 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    13 antennal disc ML-DmD20-c5    22 mixed discs ML-DmD4-c1    8 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    13 ovary fGS/OSS    5 ovary OSC    9 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    19 Schneider line 2 Sg4    15 embryonic 1182-4H    14 embryonic GM2    15 embryonic Kc167    11 embryonic S1    20 embryonic S3    14 leg disc CME L1    10 wing disc CME-W2    14 wing disc ML-DmD8    8 wing disc ML-DmD9    14 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    13 antennal disc ML-DmD20-c5    22 mixed discs ML-DmD4-c1    8 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    13 ovary fGS/OSS    5 ovary OSC    9 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    1 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    1 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    1 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    1 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    1 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    1 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    1 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    1 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_26 mE1_20_mRNA_expression_cluster_05
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0260779
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | recessive gatA50 gatA112 gatA145 gatAS092902 viable, with Scer\GAL4pnr-MD237 gatAGD9907 Sterility Allele female sterile | germline clone | recessive gatA50 gatA112 gatA145 Other Phenotypes Allele developmental rate defective | larval stage (with Df(3R)Cha7) gatA112 small body | larval stage (with Df(3R)Cha7) gatA112 visible | recessive | somatic clone gatAJR15 gatAJR94 gatAJR113 gatAJR205 gatAJV87 visible | somatic clone gatA50 gatA112 Phenotype manifest in Allele egg chamber | germline clone gatA112 gatA50 embryonic/larval brain (with Df(3R)Cha7) gatA112 embryonic/larval salivary gland (with Df(3R)Cha7) gatA112 eye | somatic clone gatAJR15 gatAJV87 gatAJR94 gatAJR113 gatAJR205 gatA112 gatA50 eye disc | somatic clone gatAJR15 gatAJV87 gatAJR94 gatAJR113 gatAJR205 imaginal disc (with Df(3R)Cha7) gatA112 karyosome | germline clone gatA112 gatA50 nurse cell & nucleus | germ-line clone gatA112 gatA50
Classical Alleles ( 12 )
For All Classical Alleles Show
Allele of gatA Class Mutagen Stocks Known lesion gatAS092902 amorphic allele - genetic evidence Delta2-3 P-element activity 1 Yes gatADG17803 1 -- gatA112 0 Yes gatA145 0 Yes gatA50 0 Yes gatAExel6182 0 Yes gatAExel6183 0 Yes gatAJR113 ethyl methanesulfonate 0 Yes gatAJR15 ethyl methanesulfonate 0 Yes gatAJR205 ethyl methanesulfonate 0 -- gatAJR94 ethyl methanesulfonate 0 Yes gatAJV87 ethyl methanesulfonate 0 Yes
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of gatA Class Mutagen Stocks Known lesion gatAGD9907 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes gatAKK101071 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes gatAAct5C.T:Avic\GFP-EGFP in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Cha7 (Szeged Stock Center, 1998-, Morris et al., 2008) Df(3R)Exel6182 (Morris et al., 2008) Df(3R)Exel6183 (Morris et al., 2008)
Not disrupted in	Df(3R)Dl-BX12 (Szeged Stock Center, 1998-)
Partially disrupted in	Df(3R)Exel6182 (Morris et al., 2008) Df(3R)Exel6183 (Morris et al., 2008)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD9907} NA P{KK101071} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{XP}NP15.6d03824 NA insertion of enhancer trap P{lacW}gatAS092902 No miscellaneous insertions P{wHy}NP15.6DG17803 NA
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 3 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
karyosome formation inferred from mutant phenotype (Morris et al., 2003) oogenesis inferred from mutant phenotype (Morris et al., 2003)
Cellular Component
CV term Evidence References
mitochondrion inferred from direct assay (Liao et al., 2006)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity inferred from sequence or structural similarity with EMBL:AE000680 (FlyBase, 1992-)
Biological Process
CV term Evidence References
translation inferred from electronic annotation with InterPro:IPR004412 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	gene   nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions gatA allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0260779 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42283
Orthologs
OrthoDB Orthologs (45) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG66Q7CC Dipteran inclusive ortholog search EOG66Q720 Insect inclusive ortholog search EOG63R2H7 Arthropod inclusive ortholog search EOG6RJDH1 Metazoa inclusive ortholog search EOG6XWTRD
Orthologs in Drosophila Species (EOG66Q7CC)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\gatA     Drosophila simulans   Dsim\GD20138     Drosophila sechellia   Dsec\GM23359     Drosophila erecta   Dere\GG16219     Drosophila yakuba   Dyak\GE25156     Drosophila ananassae   Dana\GF16420     Drosophila pseudoobscura pseudoobscura   Dpse\GA19290     Drosophila persimilis   Dper\GL13915     Drosophila willistoni   Dwil\GK13718     Drosophila virilis   Dvir\GJ14217     Drosophila mojavensis   Dmoj\GI22341     Drosophila grimshawi   Dgri\GH13996
Orthologs in non-Drosophila Dipterans (EOG66Q720)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\gatA   Anopheles gambiae Malaria mosquito  Agam\gatA   Culex quinquefasciatus Southern house mosquito  Cqui\gatA
Orthologs in non-Dipteran Insects (EOG63R2H7)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\gatA   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG011407   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH16999   Atta cephalotes Leafcutter ant  Acep\ACEP21436   Camponotus floridanus Florida carpenter ant  Cflo\CFLO12456   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL15658   Linepithema humile Argentine ant  Lhum\LH18360   Pogonomyrmex barbatus Red harvester ant  Pbar\PB24784   Solenopsis invicta Red fire ant  Sinv\SINV23117   Acyrthosiphon pisum Pea aphid  Apim\ACYPI004077   Bombyx mori Silkmoth  Bmor\BGIBMGA010791   Pediculus humanus Human body louse  Phum\gatA   Tribolium castaneum Red flour beetle  Tcas\TC013788
Orthologs in non-Insect Arthropods (EOG6RJDH1)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_188353   Ixodes scapularis Deer tick  Isca\gatA
Orthologs in non-Arthropod Metazoa (EOG6XWTRD)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\Y41D4A.6   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_002810gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_016178gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_020324gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_017354gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_001311gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_017349gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_005666gn   Danio rerio Zebrafish  Drer\qrsl1   Xenopus tropicalis Western clawed frog  Xtro\qrsl1   Gallus gallus Domestic chicken  Ggal\QRSL1   Mus musculus House mouse  Mmus\Qrsl1   Rattus norvegicus Norway rat  Rnor\Qrsl1   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000026715   Homo sapiens Human  Hsap\QRSL1
Human Orthologs (1)
Gene OMIM HGNC Hsap\QRSL1
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	21579 y1 w67c23; P{wHy}NP15.6DG17803 gatADG17803 37727 yd2 w1118 P{ey-FLP.N}1; P{neoFRT}82B P{lacW}gatAS092902/TM3, P{Car20y}AS1, Ser1
VDRC	v106175 P{KK101071}VIE-260B v21012 w1118; P{GD9907}v21012/CyO
Genomic Clones ( 2 )
	BACR07D13 BACR44N12 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 78 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	SD08002
Other clones	FI17531
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM30812 RE19119 RH18834 RH19888 RH30207 RH74763 SD10901 SD10913 SD21269
Other clones	109210 CK00072 CK01014 EK263743 FGH120G02 RP003012309 RP003018906 RP003031597 RP003040443 RP003045660 RP003052012 RP003053122 RP003053839 RP003054089 RP003058503 RP003087949 RP003099268 RP003117086 RP003122375 RP003122663 RP003128133 RP003131786 RP003145263 RP003161453 RP003163913 RP003171302 RP003214872 RP003228963 RP003229745 RP003235481 RP003239093 RP003246861 RP003255275 RP003263117 RP003267526 RP003277722 RP003281796 RP003284267 RP003301744 RP003393064 RP003401196 RP003407205 RP003424467 RP003429233 RP003462050 RP003488565 RP003495144 RP003503258 RP003511268 RP003521025 RP003530244 RP003552629 RP003554563 RP003587950 RP003590487 RP003608352 RP003608758 RP003625172 RP003626977 RP003631138 RP003631212 RP003634379 RP003639473 RP003649345 RP003651124 RP003668983 RP003671942
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0260779 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42283
Antibody Information
Other Information
Discoverer
Etymology
	The gene is named "benedict" after one of "the unfortunate fates commonly met by eggs", since mutants show defects in oocyte specification or early oogenesis. (Morris et al., 2003)
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: gatA benedict (Bergman et al., 2007) Source for merge of: gatA l(3)S092902 (Morris et al., 2008)
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_142518 RefSeq (Proteins) • NP_650775 DDBJ / EMBL / GenBank • AAD49738 AAF55624 AAL29161 AF170829 AI541998 AW944538 AY061613 Entrez Gene - A searchable database of RefSeq genes. • 42283 UniProtKB/Swiss-Prot • Q9VE09 UniProtKB/TrEMBL • Q7KLE9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Amidase (IPR000120) Glutamyl-tRNA(Gln) amidotransferase A subunit (IPR004412) Amidase signature domain (IPR023631)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0260779 DRSC - Results from RNAi screens. • FBgn0260779 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0260779 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0260779 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42283 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42283 modMine - Data generated by the modENCODE project. • FBgn0260779
Synonyms & Secondary IDs ( 9 )
Reported As
Symbol Synonym	0929/02 (Deak et al., 1997) bene (Bergman et al., 2007, Kruyer et al., 2007, Morris et al., 2008) benedict   CG6007 (Keleman et al., 2009.8.5) gatA (Bergman et al., 2007, Liao et al., 2006, Morris et al., 2008, Ameres et al., 2011) l(3)S092902 (Morris et al., 2008)
Name Synonym	benedict (Kruyer et al., 2007, Morris et al., 2003, Morris et al., 2008) gatA   glutamyl-tRNA amidotransferase A   glutamyl-tRNA amidotransferase subunit A   lethal (3) S092902
Secondary FlyBase IDs
	FBgn0027658 FBgn0028061 FBgn0067781 FBgn0086360
References ( 25 )
Generate a list of	All references relating to this gene ( 25 )
List References by type	Research paper  ( 7 ) Supplementary material  ( 3 ) Personal communication to FlyBase  ( 7 ) Abstract  ( 2 ) FlyBase analysis  ( 1 ) DNA/RNA sequence record  ( 1 ) Stock list  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 1 )
	Ameres et al., 2011, RNA 17(1): 54--63 Target RNA-directed tailing and trimming purifies the sorting of endo-siRNAs between the two Drosophila Argonaute proteins. [FBrf0212657] Show all research papers ...