A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\par-1

General Information
SymbolDmel\par-1SpeciesD. melanogaster
Namepar-1Annotation symbolCG8201
Feature typeprotein_coding_geneFlyBase IDFBgn0260934
Gene Model StatusCurrent Stock availability 18 publicly available
Also Known Aspar1, l(2)k06323, dPAR-1, dPAR1
Genomic Location
Chromosome (arm)2RRecombination map
Cytogenetic map56D9-57D12Sequence location2R:15,343,679..15,373,193 [+]

Genomic Maps

GBrowse View Help
modENCODE GBrowse
detailed view
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Automatically generated summary

See sections below for more information
The gene par-1 is referred to in FlyBase by the symbol Dmel\par-1 (CG8201, FBgn0260934). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: tau-protein kinase activity; protein kinase activity. There is experimental evidence for 17 unique biological process terms, many of which group under: cellular component organization or biogenesis; multicellular organism reproduction; biological regulation; localization; organelle organization; ovarian follicle cell development; regulation of developmental process; establishment of planar polarity; gamete generation; germarium-derived oocyte differentiation; immune response. 66 alleles are reported. The phenotypes of these alleles are annotated with: organ system; organ system subdivision; external compound sense organ; organelle; cytoplasmic part; peripheral nervous system; synapse; acellular anatomical structure; larval abdominal segment; extended germ band embryo; abdominal 5 ventral denticle belt; imaginal precursor; adult segment. It has 20 annotated transcripts and 20 annotated polypeptides. Protein features are: Kinase-associated KA1; Protein kinase, ATP binding site; Protein kinase, catalytic domain; Protein kinase-like domain; Serine/threonine-protein kinase, active site; Serine/threonine-protein kinase, catalytic domain; Serine/threonine-protein kinase-like domain; Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: adult brain. Gene sequence location is 2R:15343679..15373193.

External Summaries
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01
Sequence features
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
56D9-57D12  
Limits computationally determined from genome sequence between P{lacW}l(2)k00705k00705&P{lacW}mei-W68k05603 and P{EP}CG11007EP736; Left limit from (method unavailable) (FBrf0108422) Right limit from (method unavailable) (FBrf0108422)  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
56D-56D  
56D-56D  
56D8-56D11  
(determined by in situ hybridisation)  
56F9-57D12  
(determined by deficiency mapping, details unspecified).  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\par-1 for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0086535 FBtr0304962 FBtr0301505 FBtr0086451 FBtr0100392 FBtr0100390 FBtr0086450 FBtr0086461 FBtr0086457 FBtr0086458 FBtr0100393 FBtr0086460 FBtr0086459 FBtr0086452 FBtr0086453 FBtr0086454 FBtr0086456 FBtr0301506 FBtr0100391 FBtr0086455 FBtr0301503 FBtr0301504 FBtr0086502 FBtr0086501 FBpp0085719 FBpp0085657 FBpp0099804 FBpp0085647 FBpp0293501 FBpp0290720 FBpp0085646 FBpp0099806 FBpp0099807 FBpp0085654 FBpp0085653 FBpp0085655 FBpp0085656 FBpp0085648 FBpp0099805 FBpp0290719 FBpp0085649 FBpp0085652 FBpp0085650 FBpp0290721 FBpp0290718 FBpp0085651 FBpp0085690 FBpp0085689 FBti0112094 FBti0106323 FBti0059584 FBti0028718 FBti0025665 FBti0109934 FBti0039941 FBti0105983 FBti0007774 FBti0059583 FBti0106713 FBti0103398 FBti0006787_2 FBti0006787_1 FBti0106079 FBti0072159 FBti0111372 FBti0109836 FBti0111126 FBti0110307 FBti0113445 FBti0016284 FBti0104859 FBti0108426 FBti0045077 FBti0014543 FBti0125303_2 FBti0125303_1 FBti0029327 FBti0106891 FBti0070158 FBti0006751 FBti0026139 FBti0046662 FBti0056756 FBti0046836 FBti0071030 FBti0056380 FBti0025785 FBti0055490 FBti0069561 FBti0107173 FBti0124356 FBti0110404 FBti0102969 FBti0102801 FBti0047383 FBti0041797 FBti0050397
Comments on Gene Model
Shares 5' UTR with upstream gene.
3' UTRs of several alternative transcripts contain an ORF that is conserved among close Drosophila species (potential peptide 231aa in length; possible stop-codon suppression).
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0086450
  4823
  938
FBtr0086451
  4724
  905
FBtr0086455
  4904
  1060
FBtr0086452
  4892
  1060
FBtr0086454
  4811
  1033
FBtr0086453
  5006
  1098
FBtr0086456
  4792
  1138
FBtr0086457
  4768
  993
FBtr0086458
  4736
  993
FBtr0086459
  4970
  993
FBtr0100390
  4854
  833
FBtr0100391
  3912
  1060
FBtr0100392
  3862
  833
FBtr0086460
  4834
  993
FBtr0301503
  4801
  1141
FBtr0100393
  3287
  357
FBtr0301504
  3870
  1046
FBtr0301505
  4836
  827
FBtr0301506
  4898
  1058
FBtr0304962
 
  6038
  938
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0085646  
101.5  
938  
10.35  
FBpp0085647  
97.7  
905  
10.20  
FBpp0085651  
115.2  
1060  
10.47  
FBpp0085648  
115.2  
1060  
10.47  
FBpp0085650  
112.2  
1033  
10.37  
FBpp0085649  
118.8  
1098  
10.47  
FBpp0085652  
124.3  
1138  
10.32  
FBpp0085653  
107.8  
993  
10.58  
FBpp0085654  
107.8  
993  
10.58  
FBpp0085655  
107.8  
993  
10.58  
FBpp0099804  
89.3  
833  
10.43  
FBpp0099805  
115.2  
1060  
10.47  
FBpp0099806  
89.3  
833  
10.43  
FBpp0085656  
107.8  
993  
10.58  
FBpp0290718  
124.6  
1141  
10.33  
FBpp0099807  
38.6  
357  
10.86  
FBpp0290719  
113.7  
1046  
10.44  
FBpp0290720  
88.5  
827  
10.42  
FBpp0290721  
114.9  
1058  
10.49  
FBpp0293501  
101.5  
938  
10.35  
 
 
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
A large number of transcripts are produced from the par-1 gene by the use of alternative promoters, multiple 3' ends and additional alternative splicing events. The predicted proteins range from 833-1130 amino acids.
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
western blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
par-1 protein localizes cortically within follicle cells at early stages of oogenesis. It is restricted to the basolateral membrane domain of the columnar epithelium in stage 10 egg chambers. The earliest germ line staining is in the fusome in the germarium. par-1 protein then localizes to the ring canals and the cortical cytoskeleton of the nurse cells. No asymmetric localization of par-1 protein is observed in the oocyte during stages 1-8 but in stage 9, a transient enrichment is observed in the anterior of the oocyte. par-1 protein then becomes progressively more concentrated at the posterior pole during stages 9 and 10.
par-1 protein is initially ubiquitously expressed in germline cells, but becomes localized to the presumptive oocyte after fusome disappearance, during oocyte specification. During oocyte polarization par-1 protein relocalizes from the anterior to the posterior of the developing oocyte. In stage 5 oocytes FBgn0260934:par-1 becomes tightly associated with the posterior cell cortex and does not overlap with FBgn0000163:baz@ protein.
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CG7744-RA par-1-RU par-1-RS par-1-RB par-1-RN par-1-RL par-1-RA mei-W68-RA par-1-RH par-1-RI par-1-RQ par-1-RO par-1-RJ par-1-RD par-1-RF par-1-RE par-1-RG par-1-RT par-1-RM par-1-RC par-1-RP par-1-RR CG11242-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0260934


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0260934
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0260934 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 2774
embryo 02-04hr
 
 1909
embryo 04-06hr
 
 1016
embryo 06-08hr
 
 1747
embryo 08-10hr
 
 2308
embryo 10-12hr
 
 2476
embryo 12-14hr
 
 3157
embryo 14-16hr
 
 3480
embryo 16-18hr
 
 3227
embryo 18-20hr
 
 2892
embryo 20-22hr
 
 2854
embryo 22-24hr
 
 3051
larva L1
 
 1902
larva L2
 
 1409
larva L3 12hr old
 
 1249
larva L3 puffstage 1-2
 
 1014
larva L3 puffstage 3-6
 
 1751
larva L3 puffstage 7-9
 
 2059
white prepupae new
 
 2293
white prepupae 12hr
 
 2688
white prepupae 24hr
 
 2423
pupae 2d postWPP
 
 2111
pupae 3d postWPP
 
 1699
pupae 4d postWPP
 
 2841
adult male 01day
 
 1786
adult male 05day
 
 1656
adult male 30day
 
 1778
adult female 01day
 
 2186
adult female 05day
 
 2357
adult female 30day
 
 2323
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2774)
embryo 02-04hr
 (1909)
embryo 04-06hr
 (1016)
embryo 06-08hr
 (1747)
embryo 08-10hr
 (2308)
embryo 10-12hr
 (2476)
embryo 12-14hr
 (3157)
embryo 14-16hr
 (3480)
embryo 16-18hr
 (3227)
embryo 18-20hr
 (2892)
embryo 20-22hr
 (2854)
embryo 22-24hr
 (3051)
larva L1
 (1902)
larva L2
 (1409)
larva L3 12hr old
 (1249)
larva L3 puffstage 1-2
 (1014)
larva L3 puffstage 3-6
 (1751)
larva L3 puffstage 7-9
 (2059)
white prepupae new
 (2293)
white prepupae 12hr
 (2688)
white prepupae 24hr
 (2423)
pupae 2d postWPP
 (2111)
pupae 3d postWPP
 (1699)
pupae 4d postWPP
 (2841)
adult male 01day
 (1786)
adult male 05day
 (1656)
adult male 30day
 (1778)
adult female 01day
 (2186)
adult female 05day
 (2357)
adult female 30day
 (2323)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2774)
embryo 02-04hr
 (1909)
embryo 04-06hr
 
 1016
embryo 06-08hr
 (1747)
embryo 08-10hr
 (2308)
embryo 10-12hr
 (2476)
embryo 12-14hr
 (3157)
embryo 14-16hr
 (3480)
embryo 16-18hr
 (3227)
embryo 18-20hr
 (2892)
embryo 20-22hr
 (2854)
embryo 22-24hr
 (3051)
larva L1
 (1902)
larva L2
 1409
larva L3 12hr old
 
 1249
larva L3 puffstage 1-2
 
 1014
larva L3 puffstage 3-6
 (1751)
larva L3 puffstage 7-9
 (2059)
white prepupae new
 (2293)
white prepupae 12hr
 (2688)
white prepupae 24hr
 (2423)
pupae 2d postWPP
 (2111)
pupae 3d postWPP
 (1699)
pupae 4d postWPP
 (2841)
adult male 01day
 (1786)
adult male 05day
 (1656)
adult male 30day
 (1778)
adult female 01day
 (2186)
adult female 05day
 (2357)
adult female 30day
 (2323)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2774
embryo 02-04hr
 
 1909
embryo 04-06hr
 
 1016
embryo 06-08hr
 
 1747
embryo 08-10hr
 
 2308
embryo 10-12hr
 
 2476
embryo 12-14hr
 
 3157
embryo 14-16hr
 
 3480
embryo 16-18hr
 
 3227
embryo 18-20hr
 
 2892
embryo 20-22hr
 
 2854
embryo 22-24hr
 
 3051
larva L1
 
 1902
larva L2
 
 1409
larva L3 12hr old
 
 1249
larva L3 puffstage 1-2
 
 1014
larva L3 puffstage 3-6
 
 1751
larva L3 puffstage 7-9
 
 2059
white prepupae new
 
 2293
white prepupae 12hr
 
 2688
white prepupae 24hr
 
 2423
pupae 2d postWPP
 
 2111
pupae 3d postWPP
 
 1699
pupae 4d postWPP
 
 2841
adult male 01day
 
 1786
adult male 05day
 
 1656
adult male 30day
 
 1778
adult female 01day
 
 2186
adult female 05day
 
 2357
adult female 30day
 
 2323
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2774
embryo 02-04hr
 
 1909
embryo 04-06hr
 
 1016
embryo 06-08hr
 
 1747
embryo 08-10hr
 
 2308
embryo 10-12hr
 
 2476
embryo 12-14hr
 
 3157
embryo 14-16hr
 
 3480
embryo 16-18hr
 
 3227
embryo 18-20hr
 
 2892
embryo 20-22hr
 
 2854
embryo 22-24hr
 
 3051
larva L1
 
 1902
larva L2
 
 1409
larva L3 12hr old
 
 1249
larva L3 puffstage 1-2
 
 1014
larva L3 puffstage 3-6
 
 1751
larva L3 puffstage 7-9
 
 2059
white prepupae new
 
 2293
white prepupae 12hr
 
 2688
white prepupae 24hr
 
 2423
pupae 2d postWPP
 
 2111
pupae 3d postWPP
 
 1699
pupae 4d postWPP
 
 2841
adult male 01day
 
 1786
adult male 05day
 
 1656
adult male 30day
 
 1778
adult female 01day
 
 2186
adult female 05day
 
 2357
adult female 30day
 
 2323
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0260934 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 2774
embryo 02-04hr
 
 1909
embryo 04-06hr
 
 1016
embryo 06-08hr
 
 1747
embryo 08-10hr
 
 2308
embryo 10-12hr
 
 2476
embryo 12-14hr
 
 3157
embryo 14-16hr
 
 3480
embryo 16-18hr
 
 3227
embryo 18-20hr
 
 2892
embryo 20-22hr
 
 2854
embryo 22-24hr
 
 3051
larva L1
 
 1902
larva L2
 
 1409
larva L3 12hr old
 
 1249
larva L3 puffstage 1-2
 
 1014
larva L3 puffstage 3-6
 
 1751
larva L3 puffstage 7-9
 
 2059
white prepupae new
 
 2293
white prepupae 12hr
 
 2688
white prepupae 24hr
 
 2423
pupae 2d postWPP
 
 2111
pupae 3d postWPP
 
 1699
pupae 4d postWPP
 
 2841
adult male 01day
 
 1786
adult male 05day
 
 1656
adult male 30day
 
 1778
adult female 01day
 
 2186
adult female 05day
 
 2357
adult female 30day
 
 2323
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2774)
embryo 02-04hr
 (1909)
embryo 04-06hr
 (1016)
embryo 06-08hr
 (1747)
embryo 08-10hr
 (2308)
embryo 10-12hr
 (2476)
embryo 12-14hr
 (3157)
embryo 14-16hr
 (3480)
embryo 16-18hr
 (3227)
embryo 18-20hr
 (2892)
embryo 20-22hr
 (2854)
embryo 22-24hr
 (3051)
larva L1
 (1902)
larva L2
 (1409)
larva L3 12hr old
 (1249)
larva L3 puffstage 1-2
 (1014)
larva L3 puffstage 3-6
 (1751)
larva L3 puffstage 7-9
 (2059)
white prepupae new
 (2293)
white prepupae 12hr
 (2688)
white prepupae 24hr
 (2423)
pupae 2d postWPP
 (2111)
pupae 3d postWPP
 (1699)
pupae 4d postWPP
 (2841)
adult male 01day
 (1786)
adult male 05day
 (1656)
adult male 30day
 (1778)
adult female 01day
 (2186)
adult female 05day
 (2357)
adult female 30day
 (2323)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2774)
embryo 02-04hr
 1909
embryo 04-06hr
 
 1016
embryo 06-08hr
 1747
embryo 08-10hr
 2308
embryo 10-12hr
 (2476)
embryo 12-14hr
 (3157)
embryo 14-16hr
 (3480)
embryo 16-18hr
 (3227)
embryo 18-20hr
 (2892)
embryo 20-22hr
 (2854)
embryo 22-24hr
 (3051)
larva L1
 1902
larva L2
 1409
larva L3 12hr old
 
 1249
larva L3 puffstage 1-2
 
 1014
larva L3 puffstage 3-6
 1751
larva L3 puffstage 7-9
 2059
white prepupae new
 2293
white prepupae 12hr
 (2688)
white prepupae 24hr
 2423
pupae 2d postWPP
 2111
pupae 3d postWPP
 1699
pupae 4d postWPP
 (2841)
adult male 01day
 1786
adult male 05day
 1656
adult male 30day
 1778
adult female 01day
 2186
adult female 05day
 2357
adult female 30day
 2323
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2774
embryo 02-04hr
 
 1909
embryo 04-06hr
 
 1016
embryo 06-08hr
 
 1747
embryo 08-10hr
 
 2308
embryo 10-12hr
 
 2476
embryo 12-14hr
 
 3157
embryo 14-16hr
 
 3480
embryo 16-18hr
 
 3227
embryo 18-20hr
 
 2892
embryo 20-22hr
 
 2854
embryo 22-24hr
 
 3051
larva L1
 
 1902
larva L2
 
 1409
larva L3 12hr old
 
 1249
larva L3 puffstage 1-2
 
 1014
larva L3 puffstage 3-6
 
 1751
larva L3 puffstage 7-9
 
 2059
white prepupae new
 
 2293
white prepupae 12hr
 
 2688
white prepupae 24hr
 
 2423
pupae 2d postWPP
 
 2111
pupae 3d postWPP
 
 1699
pupae 4d postWPP
 
 2841
adult male 01day
 
 1786
adult male 05day
 
 1656
adult male 30day
 
 1778
adult female 01day
 
 2186
adult female 05day
 
 2357
adult female 30day
 
 2323
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2774
embryo 02-04hr
 
 1909
embryo 04-06hr
 
 1016
embryo 06-08hr
 
 1747
embryo 08-10hr
 
 2308
embryo 10-12hr
 
 2476
embryo 12-14hr
 
 3157
embryo 14-16hr
 
 3480
embryo 16-18hr
 
 3227
embryo 18-20hr
 
 2892
embryo 20-22hr
 
 2854
embryo 22-24hr
 
 3051
larva L1
 
 1902
larva L2
 
 1409
larva L3 12hr old
 
 1249
larva L3 puffstage 1-2
 
 1014
larva L3 puffstage 3-6
 
 1751
larva L3 puffstage 7-9
 
 2059
white prepupae new
 
 2293
white prepupae 12hr
 
 2688
white prepupae 24hr
 
 2423
pupae 2d postWPP
 
 2111
pupae 3d postWPP
 
 1699
pupae 4d postWPP
 
 2841
adult male 01day
 
 1786
adult male 05day
 
 1656
adult male 30day
 
 1778
adult female 01day
 
 2186
adult female 05day
 
 2357
adult female 30day
 
 2323
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0260934


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0260934
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: adult brain.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Heatmap
Tissue   Expression Level
Larval Central Nervous System no informative data
Larval Midgut no informative data
Larval Hindgut no informative data
Larval Malpighian Tubules no informative data
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea no informative data
Larval Carcass no informative data
Adult Head no informative data
Adult Eye no informative data
Adult Brain no informative data
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut no informative data
Adult Hindgut no informative data
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart no informative data
Adult VirginFemale Spermatheca no informative data
Adult InseminatedFemale Spermatheca no informative data
Adult Ovary no informative data
Adult Testis no informative data
Adult Male Accessory Gland no informative data
Adult Carcass no informative data

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
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Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
centrosome & oocyte | germ-line clone
follicle cell & microtubule | somatic clone
germarium region 2b & microtubule | germ-line clone
microtubule & oocyte | posterior
oocyte & microtubule (with par-1k06323)
oocyte & microtubule (with par-1W3)
oocyte & pericentriolar material
photoreceptor cell & neuron, with Scer\GAL4elav-C155
photoreceptor cell & neuron, with Scer\GAL4hs.2sev
photoreceptor cell & neuron, with Scer\GAL4hs.PB
hide Classical Alleles ( 28 )
For All Classical Alleles Show

Allele of par-1ClassMutagenStocksKnown lesion
par-1k063232 Yes
par-15-HA-1696
1 --
par-15-HA-1763
1 --
par-1c04755
1 --
par-1CB-5700-3
1 --
par-1d04305
1 --
par-1d07289
1 --
par-1d089451 --
par-1DG235011 --
par-1e007961 --
par-1e01063
1 --
par-1k05603hypomorphic allele - genetic evidence1 Yes
par-1UM-8361-3
1 --
par-127C10 Yes
par-136G4
0 --
par-142D9
0 Yes
par-16323rev
0 Yes
par-170D3
0 Yes
par-1d06684
0 --
par-1d093050 --
par-1EP1144hypomorphic allele - genetic evidence0 Yes
par-1EP8990 Yes
par-1EY083970 Yes
par-1k06821bhypomorphic allele - genetic evidence0 Yes
par-1SH0855
0 --
par-1unspecified
0 --
par-1W30 Yes
par-1Δ-160 Yes
hide Alleles Carried on Transgenic Constructs ( 38 )
For All Alleles Carried on Transgenic Constructs Show

Allele of par-1ClassMutagenStocksKnown lesion
par-1GD148362 Yes
par-1GL002531 Yes
par-1HMS004051 Yes
par-1AA.Scer\UAS0 Yes
par-1dsRNA.2743-36480 Yes
par-1dsRNA.4138-47600 Yes
par-1dsRNA.Scer\UAS.cMDa0 Yes
par-1dsRNA.Scer\UAS.cZa0 Yes
par-1KN.Scer\UAS0 Yes
par-1KR.Scer\UAS0 Yes
par-1M329G.N1S.αTub67C.T:Avic\GFP0 Yes
par-1MtnA.T:Avic\GFP0 Yes
par-1N1L.Scer\UAS.P\T.T:Avic\GFP-m60 Yes
par-1N1L.αTub67C.T:Avic\GFP-m60 Yes
par-1N1S.AEMmut.Scer\UAS.T:Avic\GFP-m60 Yes
par-1N1S.linker.Scer\UAS.T:Avic\GFP-m60 Yes
par-1N1S.N1kinase.Scer\UAS.T:Avic\GFP-m60 Yes
par-1N1S.Scer\UAS.P\T.T:Avic\GFP-m60 Yes
par-1N1S.Scer\UAS.T:Avic\GFP-m60 Yes
par-1N1S.Scer\UAS.ΔSP0 Yes
par-1N1S.αTub67C.T:Avic\GFP0 Yes
par-1N1S.ΔC.Scer\UAS.T:Avic\GFP-m60 Yes
par-1N2S.αTub67C.T:Avic\GFP-m60 Yes
par-1N3L.αTub67C.T:Avic\GFP-m60 Yes
par-1Scer\UAS.A*.T:Avic\GFP0 Yes
par-1Scer\UAS.B*.T:Avic\GFP0 Yes
par-1Scer\UAS.C*.T:Avic\GFP0 Yes
par-1Scer\UAS.cBa0 Yes
par-1Scer\UAS.cGa0 Yes
par-1Scer\UAS.cSa0 Yes
par-1Scer\UAS.K*.T:Avic\GFP0 Yes
par-1Scer\UAS.N.T:Avic\GFP0 Yes
par-1Scer\UAS.NKT.T:Avic\GFP0 Yes
par-1Scer\UAS.SP.T:Avic\GFP0 Yes
par-1Scer\UAS.T*.T:Avic\GFP0 Yes
par-1Scer\UAS.T:Avic\GFP0 Yes
par-1Scer\UAS.ΔSP.T:Avic\GFP0 Yes
par-1T786A.N1S.Scer\UAS.P\T.T:Avic\GFP-m60 Yes
hide Aneuploid Aberrations
Disrupted in
Not disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
hide Gene Ontology: Function, Process & Cellular Component ( 34 unique terms )
hide Terms Based on Experimental Evidence ( 25 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
inferred from direct assay
inferred from direct assay
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 11 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity
inferred from sequence or structural similarity with KP78a AND inferred from sequence or structural similarity with worm par-1
inferred from sequence or structural similarity with UniProtKB:Q05512
non-traceable author statement
Biological Process
CV term
References
inferred from sequence or structural similarity with KP78a AND inferred from sequence or structural similarity with worm par-1
non-traceable author statement
Cellular Component ( 0 terms)
hide Sequence Ontology: Class of Gene
 
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
par-1 allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 18 )
Harvard
Kyoto
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 202 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: par-1 anon-WO0210402.19
Source for merge of: par-1 BcDNA:RH48823
Source for merge of: par-1 CG11960
Source for merge of: par-1 l(2)27C1
Additional comments
One or more of the processed transcripts for this gene share(s) untranslated sequences with a transcript of an adjacent gene, but encode(s) a single open reading frame (ORF). The non-overlapping ORFs that share untranslated sequences are represented by par-1 and mei-W68.
Source for merge of par-1 anon-WO0210402.19 was sequence comparison (date:051113).
hide Other Comments
RNAi screen using dsRNA made from templates generated with primers directed against this gene causes a greater than three-fold increase in AttA activity in response to heat-killed E.coli after ecdysone treatment in S2 cells.
When dsRNA constructs are made and transiently transfected into S2 cells in RNAi experiments, an increase in the proportion of G2/M phase cells, an increase in cell size, a decrease in mitotic index and a whole range of mitotic abnormalities are seen.
RNAi screen using dsRNA made from templates generated with primers directed against this gene causes a phenotype when assayed in Kc167 and S2R+ cells: reduced F-actin and altered cell shape. Kc167 cells show change from round to spindle-shaped, with the formation of F-actin puncta and microtubule extensions.
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
par-1 protein phosphorylates osk protein and par-1 is required for the accumulation of osk protein.
par-1 appears to act on the cytoskeleton to affect polarisation within the oocyte in conjunction with BicD, egl and dynein.
par-1 is required early in the germline for organisation of the microtubule cytoskeleton and subsequent oocyte determination. It has a second role late in oogenesis in axis determination.
par-1 is required for the maintenance of oocyte identity.
Loss of par-1 function disrupts pole cell formation and abdominal patterning in the embryo. These defects arise from a disorganisation of the oocyte microtubule cytoskeleton.
par-1 is maternally required for gametogenesis.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 29 )
Reported As
Symbol Synonym
anon-WO0210402.19
 
BcDNA:RH48823
 
CG16701
 
CG30132
 
Name Synonym
ELKL motif kinase
lethal (2) 27C1
 
par-1
 
Par-1 protein kinase
Secondary FlyBase IDs
  • FBgn0022139
  • FBgn0026193
  • FBgn0026655
  • FBgn0034448
  • FBgn0034449
  • FBgn0034450
  • FBgn0050131
  • FBgn0050132
  • FBgn0061180
  • FBgn0064805
  • FBgn0065111
hide References ( 161 )
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hide Recent research papers ( 11 )
Morozova et al., 2011, Genetics 187(4): 1193--1205
Transcriptional networks for alcohol sensitivity in Drosophila melanogaster. [FBrf0214377]
Becalska and Gavis, 2010, Dev. Biol. 340(2): 528--538
Bazooka regulates microtubule organization and spatial restriction of germ plasm assembly in the Drosophila oocyte. [FBrf0210533]
Doerflinger et al., 2010, Development 137(10): 1765--1773
Bazooka is required for polarisation of the Drosophila anterior-posterior axis. [FBrf0210668]
Fichelson et al., 2010, Development 137(5): 815--824
lethal giant larvae is required with the par genes for the early polarization of the Drosophila oocyte. [FBrf0209930]
Gonsalvez et al., 2010, Development 137(14): 2341--2351
Sm proteins specify germ cell fate by facilitating oskar mRNA localization. [FBrf0211144]
Harumoto et al., 2010, Dev. Cell 19(3): 389--401
Atypical cadherins dachsous and fat control dynamics of noncentrosomal microtubules in planar cell polarity. [FBrf0211754]
Iijima-Ando et al., 2010, Hum. Mol. Genet. 19(10): 1930--1938
A DNA damage-activated checkpoint kinase phosphorylates tau and enhances tau-induced neurodegeneration. [FBrf0210684]
Januschke and Gonzalez, 2010, J. Cell Biol. 188(5): 693--706
The interphase microtubule aster is a determinant of asymmetric division orientation in Drosophila neuroblasts. [FBrf0210175]
Lee et al., 2010, J. Neurosci. 30(50): 16959--16969
LRRK2 kinase regulates synaptic morphology through distinct substrates at the presynaptic and postsynaptic compartments of the Drosophila neuromuscular junction. [FBrf0212570]
Mosca and Schwarz, 2010, Nat. Neurosci. 13(8): 935--943
The nuclear import of Frizzled2-C by Importins-beta11 and alpha2 promotes postsynaptic development. [FBrf0211361]
Shao et al., 2010, PLoS ONE 5(4): e9938
A modifier screen for Bazooka/PAR-3 interacting genes in the Drosophila embryo epithelium. [FBrf0210449]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010