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Gene Dmel\tay

General Information
Symbol	Dmel\tay	Species	D. melanogaster
Name	tay bridge	Annotation symbol	CG9056
Feature type	protein_coding_gene	FlyBase ID	FBgn0260938
Gene Model Status	Current	Stock availability	6 publicly available
Also Known As	l(1)XI
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	14A1-14B1	Sequence location	X:15,770,716..15,781,344 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene tay bridge is referred to in FlyBase by the symbol Dmel\tay (CG9056, FBgn0260938). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: adult walking behavior; pattern orientation. 14 alleles are reported. The phenotypes of these alleles are annotated with: protocerebral bridge; mesothoracic tergum. It has 4 annotated transcripts and 4 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-18 hour embryonic stages, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult hindgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult female reproductive system. Comments on Affy2 ProbeSet: ProbeSet 1633390_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of tay. Gene sequence location is X:15770716..15781344.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 14A1-14B1   Left limit from inclusion within Df(1)19 (FBrf0064662) Right limit from inclusion within Df(1)19 (FBrf0064662)
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\tay for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.42 Gene model reviewed during 5.50 Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters. Low-frequency RNA-Seq exon junction(s) not annotated. Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) tay-RA FBtr0074167  NM_132858   8361   2486 tay-RB FBtr0310065  NM_001272656   8336   2486 tay-RC FBtr0310066  NM_001272657   8256   2486 tay-RD FBtr0340414     8358   2485
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein tay-PA   FBpp0073960   256.6   2486   8.68     NP_573086   AAF48533 tay-PB   FBpp0301766   256.6   2486   8.68     NP_001259585   AGB95427 tay-PC   FBpp0301767   256.6   2486   8.68     NP_001259586   AGB95428 tay-PD   FBpp0309360   256.5   2485   8.62
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA803643   AA817352   AE014298 AAF48533   AE014298 AGB95427   AE014298 AGB95428   AI134132   AI134243   AW942643   AY118524 AAM49893   BG633411   BH610010   BI230476   BP553005   BP559649   BP559650   BT029261   BT030921   CO186872   CO189801   CO264700   CO279327   CO283646   CO283909   CO285795   CO292059   CO293519   CO304280   CO318645   CO320750   CO322118   CO322160   CO331140   CO339865   CO340282   CO343830   CZ482339   CZ482340   EC072755   EC076569   EC081312   EC232914   EC233016   EC237179   EC241299   EC246384   EC246385   EC246424   EC250557   EC253233   EC254482   EC255175   EC257416   EC260309
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VXM5
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult hindgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult female reproductive system. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    244.025 Larval Midgut    62.2 Larval Hindgut    98.7 Larval Malpighian Tubules    134.1 Larval Fat Body    103.4 Larval Salivary Gland    154.3 Larval Trachea    128.35 Larval Carcass    84.175 Adult Head    114.6 Adult Eye    118.55 Adult Brain    306.8 Adult Thoracic-Abdominal Ganglion    208.8 Adult Crop    124.3 Adult Midgut    81.6 Adult Hindgut    106.1 Adult Malpighian Tubules    103.1 Adult Fat Body    95.9 Adult Salivary Gland    113 Adult Heart    72.425 Adult VirginFemale Spermatheca    97.2 Adult InseminatedFemale Spermatheca    112.9 Adult Ovary    217.9 Adult Testis    20.7 Adult Male Accessory Gland    96 Adult Carcass    94.5 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    244.025 Larval Midgut    62.2 Larval Hindgut    98.7 Larval Malpighian Tubules    134.1 Larval Fat Body    103.4 Larval Salivary Gland    154.3 Larval Trachea    128.35 Larval Carcass    84.175 Adult Head    114.6 Adult Eye    118.55 Adult Brain    306.8 Adult Thoracic-Abdominal Ganglion    208.8 Adult Crop    124.3 Adult Midgut    81.6 Adult Hindgut    106.1 Adult Malpighian Tubules    103.1 Adult Fat Body    95.9 Adult Salivary Gland    113 Adult Heart    72.425 Adult VirginFemale Spermatheca    97.2 Adult InseminatedFemale Spermatheca    112.9 Adult Ovary    217.9 Adult Testis    20.7 Adult Male Accessory Gland    96 Adult Carcass    94.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    244.025 Larval Midgut    62.2 Larval Hindgut    98.7 Larval Malpighian Tubules    134.1 Larval Fat Body    103.4 Larval Salivary Gland    154.3 Larval Trachea    128.35 Larval Carcass    84.175 Adult Head    114.6 Adult Eye    118.55 Adult Brain    306.8 Adult Thoracic-Abdominal Ganglion    208.8 Adult Crop    124.3 Adult Midgut    81.6 Adult Hindgut    106.1 Adult Malpighian Tubules    103.1 Adult Fat Body    95.9 Adult Salivary Gland    113 Adult Heart    72.425 Adult VirginFemale Spermatheca    97.2 Adult InseminatedFemale Spermatheca    112.9 Adult Ovary    217.9 Adult Testis    20.7 Adult Male Accessory Gland    96 Adult Carcass    94.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    244.025 Larval Midgut    62.2 Larval Hindgut    98.7 Larval Malpighian Tubules    134.1 Larval Fat Body    103.4 Larval Salivary Gland    154.3 Larval Trachea    128.35 Larval Carcass    84.175 Adult Head    114.6 Adult Eye    118.55 Adult Brain    306.8 Adult Thoracic-Abdominal Ganglion    208.8 Adult Crop    124.3 Adult Midgut    81.6 Adult Hindgut    106.1 Adult Malpighian Tubules    103.1 Adult Fat Body    95.9 Adult Salivary Gland    113 Adult Heart    72.425 Adult VirginFemale Spermatheca    97.2 Adult InseminatedFemale Spermatheca    112.9 Adult Ovary    217.9 Adult Testis    20.7 Adult Male Accessory Gland    96 Adult Carcass    94.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    244.025 Larval Midgut    62.2 Larval Hindgut    98.7 Larval Malpighian Tubules    134.1 Larval Fat Body    103.4 Larval Salivary Gland    154.3 Larval Trachea    128.35 Larval Carcass    84.175 Adult Head    114.6 Adult Eye    118.55 Adult Brain    306.8 Adult Thoracic-Abdominal Ganglion    208.8 Adult Crop    124.3 Adult Midgut    81.6 Adult Hindgut    106.1 Adult Malpighian Tubules    103.1 Adult Fat Body    95.9 Adult Salivary Gland    113 Adult Heart    72.425 Adult VirginFemale Spermatheca    97.2 Adult InseminatedFemale Spermatheca    112.9 Adult Ovary    217.9 Adult Testis    20.7 Adult Male Accessory Gland    96 Adult Carcass    94.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    244.025 Larval Midgut    62.2 Larval Hindgut    98.7 Larval Malpighian Tubules    134.1 Larval Fat Body    103.4 Larval Salivary Gland    154.3 Larval Trachea    128.35 Larval Carcass    84.175 Adult Head    114.6 Adult Eye    118.55 Adult Brain    306.8 Adult Thoracic-Abdominal Ganglion    208.8 Adult Crop    124.3 Adult Midgut    81.6 Adult Hindgut    106.1 Adult Malpighian Tubules    103.1 Adult Fat Body    95.9 Adult Salivary Gland    113 Adult Heart    72.425 Adult VirginFemale Spermatheca    97.2 Adult InseminatedFemale Spermatheca    112.9 Adult Ovary    217.9 Adult Testis    20.7 Adult Male Accessory Gland    96 Adult Carcass    94.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    244.025 Larval Midgut    62.2 Larval Hindgut    98.7 Larval Malpighian Tubules    134.1 Larval Fat Body    103.4 Larval Salivary Gland    154.3 Larval Trachea    128.35 Larval Carcass    84.175 Adult Head    114.6 Adult Eye    118.55 Adult Brain    306.8 Adult Thoracic-Abdominal Ganglion    208.8 Adult Crop    124.3 Adult Midgut    81.6 Adult Hindgut    106.1 Adult Malpighian Tubules    103.1 Adult Fat Body    95.9 Adult Salivary Gland    113 Adult Heart    72.425 Adult VirginFemale Spermatheca    97.2 Adult InseminatedFemale Spermatheca    112.9 Adult Ovary    217.9 Adult Testis    20.7 Adult Male Accessory Gland    96 Adult Carcass    94.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    244.025 Larval Midgut    62.2 Larval Hindgut    98.7 Larval Malpighian Tubules    134.1 Larval Fat Body    103.4 Larval Salivary Gland    154.3 Larval Trachea    128.35 Larval Carcass    84.175 Adult Head    114.6 Adult Eye    118.55 Adult Brain    306.8 Adult Thoracic-Abdominal Ganglion    208.8 Adult Crop    124.3 Adult Midgut    81.6 Adult Hindgut    106.1 Adult Malpighian Tubules    103.1 Adult Fat Body    95.9 Adult Salivary Gland    113 Adult Heart    72.425 Adult VirginFemale Spermatheca    97.2 Adult InseminatedFemale Spermatheca    112.9 Adult Ovary    217.9 Adult Testis    20.7 Adult Male Accessory Gland    96 Adult Carcass    94.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    114.6   NA  Eye    118.55   NA  Brain    306.8   244.025  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    208.8   NA  Crop    124.3   62.2  Midgut    81.6   98.7  Hindgut    106.1   134.1  Malpighian Tubules    103.1   103.4  Fat Body    95.9   154.3  Salivary Gland    113   NA  Heart    72.425   128.35  Trachea    NA   NA  VirginFemale Spermatheca    97.2   NA  InseminatedFemale Spermatheca    112.9   NA  Ovary    217.9   NA  Testis    20.7   NA  Male Accessory Gland    96   84.175  Carcass    94.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    32 central nervous system, pupae P8    23 head, virgin 1-day female    11 head, virgin 4-day female    13 head, virgin 20-day female    12 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    23 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    10 fat body, pupae P8    8 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    7 ovary, virgin 4-day female    11 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3  (32) central nervous system, pupae P8    23 head, virgin 1-day female    11 head, virgin 4-day female    13 head, virgin 20-day female    12 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    23 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    10 fat body, pupae P8    8 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    7 ovary, virgin 4-day female    11 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    32 central nervous system, pupae P8    23 head, virgin 1-day female    11 head, virgin 4-day female    13 head, virgin 20-day female    12 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    23 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    10 fat body, pupae P8    8 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    7 ovary, virgin 4-day female    11 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    32 central nervous system, pupae P8    23 head, virgin 1-day female    11 head, virgin 4-day female    13 head, virgin 20-day female    12 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    23 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    10 fat body, pupae P8    8 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    7 ovary, virgin 4-day female    11 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    32 central nervous system, pupae P8    23 head, virgin 1-day female    11 head, virgin 4-day female    13 head, virgin 20-day female    12 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    23 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    10 fat body, pupae P8    8 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    7 ovary, virgin 4-day female    11 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3  32 central nervous system, pupae P8    23 head, virgin 1-day female    11 head, virgin 4-day female    13 head, virgin 20-day female    12 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    23 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    10 fat body, pupae P8    8 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    7 ovary, virgin 4-day female    11 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    32 central nervous system, pupae P8    23 head, virgin 1-day female    11 head, virgin 4-day female    13 head, virgin 20-day female    12 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    23 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    10 fat body, pupae P8    8 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    7 ovary, virgin 4-day female    11 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    32 central nervous system, pupae P8    23 head, virgin 1-day female    11 head, virgin 4-day female    13 head, virgin 20-day female    12 head, mated 1-day female    13 head, mated 4-day female    14 head, mated 20-day female    11 head, mated 1-day male    19 head, mated 4-day male    23 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    10 fat body, pupae P8    8 carcass, larvae L3 wandering    20 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    7 ovary, virgin 4-day female    11 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-18 hour embryonic stages, during early pupal stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    31 embryo 02-04hr    18 embryo 04-06hr    20 embryo 06-08hr    29 embryo 08-10hr    23 embryo 10-12hr    15 embryo 12-14hr    18 embryo 14-16hr    21 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    13 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    15 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    23 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    9 adult male 05day    11 adult male 30day    13 adult female 01day    17 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (31) embryo 02-04hr    18 embryo 04-06hr    20 embryo 06-08hr  (29) embryo 08-10hr    23 embryo 10-12hr    15 embryo 12-14hr    18 embryo 14-16hr    21 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    13 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    15 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    23 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    9 adult male 05day    11 adult male 30day    13 adult female 01day    17 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    31 embryo 02-04hr    18 embryo 04-06hr    20 embryo 06-08hr    29 embryo 08-10hr    23 embryo 10-12hr    15 embryo 12-14hr    18 embryo 14-16hr    21 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    13 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    15 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    23 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    9 adult male 05day    11 adult male 30day    13 adult female 01day    17 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    31 embryo 02-04hr    18 embryo 04-06hr    20 embryo 06-08hr    29 embryo 08-10hr    23 embryo 10-12hr    15 embryo 12-14hr    18 embryo 14-16hr    21 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    13 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    15 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    23 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    9 adult male 05day    11 adult male 30day    13 adult female 01day    17 adult female 05day    19 adult female 30day    19 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    31 embryo 02-04hr    18 embryo 04-06hr    20 embryo 06-08hr    29 embryo 08-10hr    23 embryo 10-12hr    15 embryo 12-14hr    18 embryo 14-16hr    21 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    13 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    15 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    23 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    9 adult male 05day    11 adult male 30day    13 adult female 01day    17 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  31 embryo 02-04hr    18 embryo 04-06hr    20 embryo 06-08hr  29 embryo 08-10hr    23 embryo 10-12hr    15 embryo 12-14hr    18 embryo 14-16hr    21 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    13 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    15 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    23 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    9 adult male 05day    11 adult male 30day    13 adult female 01day    17 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    31 embryo 02-04hr    18 embryo 04-06hr    20 embryo 06-08hr    29 embryo 08-10hr    23 embryo 10-12hr    15 embryo 12-14hr    18 embryo 14-16hr    21 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    13 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    15 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    23 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    9 adult male 05day    11 adult male 30day    13 adult female 01day    17 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    31 embryo 02-04hr    18 embryo 04-06hr    20 embryo 06-08hr    29 embryo 08-10hr    23 embryo 10-12hr    15 embryo 12-14hr    18 embryo 14-16hr    21 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    13 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    15 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    23 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    9 adult male 05day    11 adult male 30day    13 adult female 01day    17 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    8 embryonic 1182-4H    18 embryonic GM2    14 embryonic Kc167    7 embryonic S1    35 embryonic S3    9 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    13 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    9 wing disc ML-DmD32    17 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    24 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    10 ovary fGS/OSS    31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    8 embryonic 1182-4H    18 embryonic GM2    14 embryonic Kc167    7 embryonic S1  (35) embryonic S3    9 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    13 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    9 wing disc ML-DmD32    17 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    24 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    10 ovary fGS/OSS  (31) ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    8 embryonic 1182-4H    18 embryonic GM2    14 embryonic Kc167    7 embryonic S1    35 embryonic S3    9 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    13 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    9 wing disc ML-DmD32    17 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    24 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    10 ovary fGS/OSS    31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    8 embryonic 1182-4H    18 embryonic GM2    14 embryonic Kc167    7 embryonic S1    35 embryonic S3    9 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    13 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    9 wing disc ML-DmD32    17 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    24 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    10 ovary fGS/OSS    31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    8 embryonic 1182-4H    18 embryonic GM2    14 embryonic Kc167    7 embryonic S1    35 embryonic S3    9 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    13 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    9 wing disc ML-DmD32    17 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    24 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    10 ovary fGS/OSS    31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    8 embryonic 1182-4H    18 embryonic GM2    14 embryonic Kc167    7 embryonic S1  (35) embryonic S3    9 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    13 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    9 wing disc ML-DmD32    17 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    24 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    10 ovary fGS/OSS  31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    8 embryonic 1182-4H    18 embryonic GM2    14 embryonic Kc167    7 embryonic S1    35 embryonic S3    9 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    13 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    9 wing disc ML-DmD32    17 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    24 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    10 ovary fGS/OSS    31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    8 embryonic 1182-4H    18 embryonic GM2    14 embryonic Kc167    7 embryonic S1    35 embryonic S3    9 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    13 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    9 wing disc ML-DmD32    17 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    24 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    10 ovary fGS/OSS    31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    13 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    13 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    13 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    13 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    13 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    13 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    13 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    17 cold shock, 4-day adult    13 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    2 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_01 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0260938
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal tayEM26 tayEM34 lethal (with tay1) tayEM34 lethal (with tayEM34) tay1 lethal | recessive tayEM26 tayEM34 tayEM46 tayEM48 tayEM51 viable, with Scer\GAL4pnr-MD237 tayGD14107 Other Phenotypes Allele locomotor behavior defective tay1 visible, with Scer\GAL4pnr-MD237 tayGD14107 Phenotype manifest in Allele mesothoracic tergum, with Scer\GAL4pnr-MD237 tayGD14107 protocerebral bridge tay1
Classical Alleles ( 10 )
For All Classical Alleles Show
Allele of tay Class Mutagen Stocks Known lesion taye04585 piggyBac transposase 1 -- tayEP-866 1 Yes tayKG00195 P-element activity 1 -- tayNP0941 1 -- tay1 ethyl methanesulfonate 0 -- tayEM26 ethyl methanesulfonate 0 Yes tayEM34 ethyl methanesulfonate 0 Yes tayEM46 ethyl methanesulfonate 0 -- tayEM48 ethyl methanesulfonate 0 -- tayEM51 ethyl methanesulfonate 0 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of tay Class Mutagen Stocks Known lesion tayGD14107 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes tayKK104780 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes tay+t15.3 in vitro construct - genomic fragment 0 Yes tayScer\UAS.cPa in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(1)19 (Katzen, 1990, Rauskolb et al., 1993, Katzen and Bishop, 1996, Poeck et al., 2008) Df(1)EM43 (Katzen, 1990) Df(1)sd72b (Katzen, 1990, Rauskolb et al., 1993, Katzen and Bishop, 1996)
Duplicated in	Dp(1;4)r+l (Katzen, 1990, Rauskolb et al., 1993) Dp(1;Y)shi+1 (Katzen, 1990, Rauskolb et al., 1993, Katzen and Bishop, 1996)
Not duplicated in	Dp(1;4)80e19a (Rauskolb et al., 1993) Dp(1;4)r+m (Katzen, 1990, Rauskolb et al., 1993) Dp(1;4)r+s (Katzen, 1990, Rauskolb et al., 1993)
Not disrupted in	Dp(1;4)r+m (Katzen and Bishop, 1996) Dp(1;4)r+s (Katzen and Bishop, 1996)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{KK104780} NA P{UAS-tay.P} NA characterization construct P{tay} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{SUPor-P}tayKG00195 NA PBac{RB}taye04585 NA insertion of enhancer trap binary system P{GawB}tayNP0941 No insertion of mobile activating element P{GSV1}C736C736 NA P{GSV1}tayEP-866 NA
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
adult walking behavior inferred from mutant phenotype (Poeck et al., 2008) pattern orientation inferred from mutant phenotype (Poeck et al., 2008)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	gene   gene_with_edited_transcript (Graveley et al., 2011) nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions tay allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0260938 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32547
Orthologs
OrthoDB Orthologs (42) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG62FT2V, EOG6FR1CK Dipteran inclusive ortholog search EOG6F4SK2 Insect inclusive ortholog search EOG64F55G Arthropod inclusive ortholog search EOG6ZGMTN Metazoa inclusive ortholog search EOG6HJ1VQ
Orthologs in Drosophila Species (EOG62FT2V, EOG6FR1CK)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\tay     Drosophila melanogaster fruit fly  Dmel\btsz     Drosophila simulans   Dsim\GD20399   Y Drosophila sechellia   Dsec\GM11543   Y Drosophila sechellia   Dsec\GM25825   Y Drosophila erecta   Dere\GG22730   Y Drosophila erecta   Dere\GG21056   Y Drosophila yakuba   Dyak\GE26427   Y Drosophila ananassae   Dana\GF18128   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA26691   Y Drosophila willistoni   Dwil\GK13835   Y Drosophila virilis   Dvir\GJ22970   Y Drosophila mojavensis   Dmoj\GI10617   Y Drosophila grimshawi   Dgri\GH14085   Y
Orthologs in non-Drosophila Dipterans (EOG6F4SK2)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL003283 Y Anopheles gambiae Malaria mosquito  Agam\ODD_b Y Anopheles gambiae Malaria mosquito  Agam\AGAP005288 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ001094 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ001093 Y
Orthologs in non-Dipteran Insects (EOG64F55G)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB52856 Y Apis mellifera Western honey bee  Amel\GB52239 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG008906 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH19563 Y Atta cephalotes Leafcutter ant  Acep\ACEP26114 Y Atta cephalotes Leafcutter ant  Acep\ACEP26123 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO20150 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19023 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19022 Y Linepithema humile Argentine ant  Lhum\LH24511 Y Linepithema humile Argentine ant  Lhum\LH24512 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB24723 Y Solenopsis invicta Red fire ant  Sinv\SINV15520 Y Solenopsis invicta Red fire ant  Sinv\SINV15477 Y Solenopsis invicta Red fire ant  Sinv\SINV15513 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI001625 Y Bombyx mori Silkmoth  Bmor\BGIBMGA012483 Y Pediculus humanus Human body louse  Phum\PHUM597310 Y Tribolium castaneum Red flour beetle  Tcas\TC001061 Y
Orthologs in non-Insect Arthropods (EOG6ZGMTN)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_319285 Y Daphnia pulex Water flea  Dpux\JGI_V11_94612 Y Ixodes scapularis Deer tick  Isca\ISCW022158 Y
Orthologs in non-Arthropod Metazoa (EOG6HJ1VQ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_019745gn Y
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD24672 Drosophila erecta Dere\GG19362 Drosophila yakuba Dyak\GE16010 Drosophila ananassae Dana\GF20183 Drosophila pseudoobscura pseudoobscura Dpse\GA27826 Drosophila persimilis Dper\GL18070 Drosophila willistoni Dwil\GK15277 Drosophila virilis Dvir\GJ14664 Drosophila mojavensis Dmoj\GI14166 Drosophila grimshawi Dgri\GH12549
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	43452 w* P{GSV1}tayEP-866 13059 y1 P{SUPor-P}tayKG00195; ry506
Harvard	- PBac{RB}taye04585
Kyoto	103825 y* w* P{GawB}tayNP0941 / FM7c
VDRC	v107891 P{KK104780}VIE-260B v29021 w1118 P{GD14107}v29021
Genomic Clones ( 2 )
	BACR22H11 BACR32K23 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 45 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH11014 LD22609
Other clones	DPiM_GH11014 IP19879
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH11503 GH11644 GH26563 GM13764 RE14162
Other clones	20144 29853 31390 61516 61520 61993 106212 106954 180096 214289.36 214469.32 214499.18 214545.19 214567.31 CK01.56A.E7 CK01.78A.H9 EK024201 EK045213 EK060731 EK134052 EK139946 EK164002 EK164763 EK187249 EK187438 EK199107 EK203205 EK244247 EK273307 EK287935 EK298542 EP09534 EP10337 EP18159 FGM222A08 FGM322B04
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0260938 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32547
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: tay CG9056 (Poeck et al., 2008)
Additional comments
Other Comments
	One of 16 complementation groups identified in a screen for mutations that fail to complement Df(1)sd72b for viability. (Katzen, 1990)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132858 NM_001272656 NM_001272657 RefSeq (Proteins) • NP_573086 NP_001259585 NP_001259586 DDBJ / EMBL / GenBank • AA817352 AAF48533 AAM49893 AGB95427 AGB95428 AW942643 AY118524 BH610010 CZ482339 CZ482340 Entrez Gene - A searchable database of RefSeq genes. • 32547 UniProtKB/TrEMBL • Q9VXM5
Other Crossreferences
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0260938 DRSC - Results from RNAi screens. • FBgn0260938 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0260938 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0260938 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32547 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32547 modMine - Data generated by the modENCODE project. • FBgn0260938
Synonyms & Secondary IDs ( 9 )
Reported As
Symbol Synonym	CG9056 (Schumann et al., 2011, Poeck et al., 2008, Molnar et al., 2006, Keleman et al., 2009.8.5) dAUTS2 (Schumann et al., 2011) l(1)13Ff   l(1)14Ac   l(1)XI (Rauskolb et al., 1993, Katzen, 1990) tay (Schumann et al., 2011, Poeck et al., 2008, Triphan et al., 2010, Wasbrough et al., 2010) XI (Katzen and Bishop, 1996)
Name Synonym	CG9056   lethal (1) 14Ac   tay bridge (Poeck et al., 2008, Triphan et al., 2010)
Secondary FlyBase IDs
	FBgn0013512 FBgn0030702
References ( 20 )
Research paper	Schumann et al., 2011, Proc. Natl. Acad. Sci. U.S.A. 108(17): 7119--7124 Genome-wide association and genetic functional studies identify autism susceptibility candidate 2 gene (AUTS2) in the regulation of alcohol consumption. [FBrf0213570] Triphan et al., 2010, Curr. Biol. 20(7): 663--668 Visual targeting of motor actions in climbing Drosophila. [FBrf0210602] Willis et al., 2010, J. Insect Sci. 10: 66 Microarray Analysis of Juvenile Hormone Response in Drosophila melanogaster S2 cells. [FBrf0211402] Poeck et al., 2008, Dev. Neurobiol. 68(8): 1046--1058 Locomotor control by the central complex in Drosophila - An analysis of the tay bridge mutant. [FBrf0205154] Molnar et al., 2006, Genetics 174(3): 1635--1659 A gain-of-function screen identifying genes required for vein formation in the Drosophila melanogaster wing. [FBrf0195387] Katzen and Bishop, 1996, Proc. Natl. Acad. Sci. U.S.A. 93(24): 13955--13960 myb provides an essential function during Drosophila development. [FBrf0090640] Rauskolb et al., 1993, Cell 74(6): 1101--1112 extradenticle, a regulator of homeotic gene activity, is a homolog of the homeobox-containing human proto-oncogene pbx1. [FBrf0064662]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 29. Summary of A-to-I RNA Editing Sites Discovered. [FBrf0213715] Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Wasbrough et al., 2010, J. Proteomics 73(11): Supplemental Table 1. Mass spectrometry data. [FBrf0213252] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file) Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Thesis	Katzen, 1990, Ph.D. Thesis, University of California at San Francisco, CA: xvi + 348pp Proto-oncogenes in Drosophila: molecular and genetic analysis. [FBrf0052790]