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Gene Dmel\Xrp1

General Information
Symbol	Dmel\Xrp1	Species	D. melanogaster
Name		Annotation symbol	CG17836
Feature type	protein_coding_gene	FlyBase ID	FBgn0261113
Gene Model Status	Current	Stock availability	15 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	91D3-91D5	Sequence location	3R:14,740,690..14,752,711 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\Xrp1 (CG17836, FBgn0261113). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: protein dimerization activity. There is experimental evidence that it is involved in the biological process: olfactory behavior; cellular process; chromosome organization; imaginal disc-derived wing morphogenesis; negative regulation of cell proliferation. 27 alleles are reported. The phenotype of these alleles is annotated with: wing. It has 7 annotated transcripts and 7 annotated polypeptides. Protein features are: AT hook, DNA-binding motif. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages, in adult male stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult testis. Comments on Affy2 ProbeSet: ProbeSet 1632712_s_at completely aligns to an exonic region common to each of the 5 FlyBase-annotated transcript isoforms of Xrp1. Gene sequence location is 3R:14740690..14752711.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 91D3-91D5   Left limit from in situ hybridisation (FBrf0067338) Right limit from in situ hybridisation (FBrf0067338)
Experimentally Determined Cytological Location
Cytogenetic map Notes References 91D3-91D5   (determined by in situ hybridisation)   (Spradling et al., 1999) 91D3-91D5   (determined by in situ hybridisation)   (BDGP Project Members, 1994-1999)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Xrp1 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Xrp1-RA FBtr0083701  NM_169839   3027   668 Xrp1-RB FBtr0083700  NM_142504   3619   668 Xrp1-RC FBtr0083702  NM_169840   2120   406 Xrp1-RD FBtr0083703  NM_169841   1740   406 Xrp1-RE FBtr0113246  NM_001104363   2030   406 Xrp1-RF FBtr0334523  NM_001275789   3196   668 Xrp1-RG FBtr0334524  NM_001275790   3167   668
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Xrp1-PA   FBpp0083115   72.8   668   4.62     NP_732384   AAF55608 Xrp1-PB   FBpp0083114   72.8   668   4.62     NP_650761   AAN13791 Xrp1-PC   FBpp0083116   44.7   406   4.46     NP_732385   AAN13792 Xrp1-PD   FBpp0083117   44.7   406   4.46     NP_732386   AAN13793 Xrp1-PE   FBpp0112158   44.7   406   4.46     NP_001097833   ABW08700 Xrp1-PF   FBpp0306590   72.8   668   4.62     NP_001262718   AGB96098 Xrp1-PG   FBpp0306591   72.8   668   4.62     NP_001262719   AGB96099
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • AT hook, DNA-binding motif (IPR017956)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA696872   AA697662   AA698041   AA698670   AE014297 AAF55608   AE014297 AAN13791   AE014297 AAN13792   AE014297 AAN13793   AE014297 ABW08700   AE014297 AGB96098   AE014297 AGB96099   AI062269   AI063331   AI106832   AI109120   AI109656   AI113442   AI124323   AI134291   AI135127   AI260775   AI296700   AI297411   AI388346   AI404050   AI404244   AI405880   AI405904   AI513104   AI517466   AI531089   AI531326   AI531370   AI531381   AI533828   AI534669   AI542779   AI546661   AQ026180   AW944211   AY069778 AAL39923   BF486225   BF491768   BF497571   BG636524   BG641162   BI162415   BI162827   BI169317   BI170951   BI172098   BI229250   BI235269   BI237073   BI243635   BI367864   BI373386   BI636231   BI636951   BI637914   BP541716   BP547449   BP548993   BP548994   BP549025   BP549710   BP550957   BP558956   BP558957   BP560072   BP560073   BT001871 AAN71643   BT001875 AAN71647   BT058039   CA805383   CK135418   CK445275   CK657503   CK659841   CK659965   CK660361   CK660467   CK662310   CO152836   CO152850   CO152913   CO153255   CO153962   CO154191   CO154306   CO155420   CO155475   CO156074   CO156079   CO156706   CO156715   CO156795   CO157040   CO176956   CO184333   CO185668   CO186952   CO187259   CO267458   CO273006   CO273331   CO282691   CO284047   CO285120   CO290623   CO293917   CO298489   CO300217   CO303543   CO306420   CO307118   CO310400   CO312119   CO318487   CO323823   CO324476   CO327277   CO327699   CO328178   CO328751   CO329183   CO329673   CO330383   CO330580   CO335773   CO336769   CO337066   CO337133   CO337763   CO338639   CO338663   CO339173   CO342397   CO345438   CZ466558   CZ466606   CZ467764   CZ467765   EC057235   EC062691   EC063326   EC066823   EC073554   EC074342   EC077496   EC078696   EC078783   EC079021   EC080040   EC084611   EC091093   EC197962   EC200765   EC202867   EC204883   EC206473   EC207876   EC212723   EC214346   EC215638   EC216328   EC217747   EC220818   EC226090   EC233937   EC236583   EC238811   EC252718   EC253573   EC257736   EC259999   EC262405   EC262486   EC262582   EC262627   EC263524   EC263604   EC264019   EC264758   EC264819   EC264888   EC264899   EC264935   EC265316   EC265476   EC265556   EC265935   EC266030   EC266159   EC267261   EC267486   EL869869   EL876591   EL876592   ES693634   ES694163   ES694166   ES695285   EV586461   EV588575   EV588920   EV588967   EV589295   EV590473
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8IN74 Q9VE23 Q8I0S0 Q8T9G5
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 11 -- 12   anal pad primordium   (Fisher et al., 2012) Comment:reported as anal pad specific anlage dorsal epidermis primordium   (Fisher et al., 2012) posterior spiracle primordium   (Fisher et al., 2012) Comment:reported as posterior spiracle specific anlage ventral epidermis primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic anal pad   (Fisher et al., 2012) embryonic dorsal epidermis   (Fisher et al., 2012) embryonic head epidermis   (Fisher et al., 2012) embryonic ventral epidermis   (Fisher et al., 2012) embryonic/larval posterior spiracle   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    530.35 Larval Midgut    1395.3 Larval Hindgut    1290.9 Larval Malpighian Tubules    2096.5 Larval Fat Body    718.4 Larval Salivary Gland    880.7 Larval Trachea    1692.75 Larval Carcass    1173.45 Adult Head    798.1 Adult Eye    654.7 Adult Brain    694.4 Adult Thoracic-Abdominal Ganglion    918.8 Adult Crop    1047.6 Adult Midgut    1682 Adult Hindgut    1151.8 Adult Malpighian Tubules    2995.2 Adult Fat Body    888 Adult Salivary Gland    889.5 Adult Heart    1334.375 Adult VirginFemale Spermatheca    1080.7 Adult InseminatedFemale Spermatheca    1099.4 Adult Ovary    79.4 Adult Testis    107.8 Adult Male Accessory Gland    617.8 Adult Carcass    1178.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  530.35 Larval Midgut  (1395.3) Larval Hindgut  (1290.9) Larval Malpighian Tubules  (2096.5) Larval Fat Body  (718.4) Larval Salivary Gland  (880.7) Larval Trachea  (1692.75) Larval Carcass  (1173.45) Adult Head  (798.1) Adult Eye  (654.7) Adult Brain  (694.4) Adult Thoracic-Abdominal Ganglion  (918.8) Adult Crop  (1047.6) Adult Midgut  (1682) Adult Hindgut  (1151.8) Adult Malpighian Tubules  (2995.2) Adult Fat Body  (888) Adult Salivary Gland  (889.5) Adult Heart  (1334.375) Adult VirginFemale Spermatheca  (1080.7) Adult InseminatedFemale Spermatheca  (1099.4) Adult Ovary    79.4 Adult Testis    107.8 Adult Male Accessory Gland  (617.8) Adult Carcass  (1178.9) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    530.35 Larval Midgut  (1395.3) Larval Hindgut  (1290.9) Larval Malpighian Tubules  (2096.5) Larval Fat Body    718.4 Larval Salivary Gland    880.7 Larval Trachea  (1692.75) Larval Carcass  (1173.45) Adult Head    798.1 Adult Eye    654.7 Adult Brain    694.4 Adult Thoracic-Abdominal Ganglion    918.8 Adult Crop  1047.6 Adult Midgut  (1682) Adult Hindgut  (1151.8) Adult Malpighian Tubules  (2995.2) Adult Fat Body    888 Adult Salivary Gland    889.5 Adult Heart  (1334.375) Adult VirginFemale Spermatheca  (1080.7) Adult InseminatedFemale Spermatheca  (1099.4) Adult Ovary    79.4 Adult Testis    107.8 Adult Male Accessory Gland    617.8 Adult Carcass  (1178.9) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    530.35 Larval Midgut    1395.3 Larval Hindgut    1290.9 Larval Malpighian Tubules    2096.5 Larval Fat Body    718.4 Larval Salivary Gland    880.7 Larval Trachea    1692.75 Larval Carcass    1173.45 Adult Head    798.1 Adult Eye    654.7 Adult Brain    694.4 Adult Thoracic-Abdominal Ganglion    918.8 Adult Crop    1047.6 Adult Midgut    1682 Adult Hindgut    1151.8 Adult Malpighian Tubules    2995.2 Adult Fat Body    888 Adult Salivary Gland    889.5 Adult Heart    1334.375 Adult VirginFemale Spermatheca    1080.7 Adult InseminatedFemale Spermatheca    1099.4 Adult Ovary    79.4 Adult Testis    107.8 Adult Male Accessory Gland    617.8 Adult Carcass    1178.9 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    530.35 Larval Midgut    1395.3 Larval Hindgut    1290.9 Larval Malpighian Tubules    2096.5 Larval Fat Body    718.4 Larval Salivary Gland    880.7 Larval Trachea    1692.75 Larval Carcass    1173.45 Adult Head    798.1 Adult Eye    654.7 Adult Brain    694.4 Adult Thoracic-Abdominal Ganglion    918.8 Adult Crop    1047.6 Adult Midgut    1682 Adult Hindgut    1151.8 Adult Malpighian Tubules    2995.2 Adult Fat Body    888 Adult Salivary Gland    889.5 Adult Heart    1334.375 Adult VirginFemale Spermatheca    1080.7 Adult InseminatedFemale Spermatheca    1099.4 Adult Ovary    79.4 Adult Testis    107.8 Adult Male Accessory Gland    617.8 Adult Carcass    1178.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  530.35 Larval Midgut  (1395.3) Larval Hindgut  (1290.9) Larval Malpighian Tubules  (2096.5) Larval Fat Body  718.4 Larval Salivary Gland  (880.7) Larval Trachea  (1692.75) Larval Carcass  (1173.45) Adult Head  798.1 Adult Eye  654.7 Adult Brain  694.4 Adult Thoracic-Abdominal Ganglion  (918.8) Adult Crop  (1047.6) Adult Midgut  (1682) Adult Hindgut  (1151.8) Adult Malpighian Tubules  (2995.2) Adult Fat Body  (888) Adult Salivary Gland  (889.5) Adult Heart  (1334.375) Adult VirginFemale Spermatheca  (1080.7) Adult InseminatedFemale Spermatheca  (1099.4) Adult Ovary    79.4 Adult Testis    107.8 Adult Male Accessory Gland  617.8 Adult Carcass  (1178.9) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    530.35 Larval Midgut  1395.3 Larval Hindgut  1290.9 Larval Malpighian Tubules  (2096.5) Larval Fat Body    718.4 Larval Salivary Gland    880.7 Larval Trachea  1692.75 Larval Carcass  1173.45 Adult Head    798.1 Adult Eye    654.7 Adult Brain    694.4 Adult Thoracic-Abdominal Ganglion    918.8 Adult Crop  1047.6 Adult Midgut  1682 Adult Hindgut  1151.8 Adult Malpighian Tubules  (2995.2) Adult Fat Body    888 Adult Salivary Gland    889.5 Adult Heart  1334.375 Adult VirginFemale Spermatheca  1080.7 Adult InseminatedFemale Spermatheca  1099.4 Adult Ovary    79.4 Adult Testis    107.8 Adult Male Accessory Gland    617.8 Adult Carcass  1178.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    530.35 Larval Midgut    1395.3 Larval Hindgut    1290.9 Larval Malpighian Tubules    2096.5 Larval Fat Body    718.4 Larval Salivary Gland    880.7 Larval Trachea    1692.75 Larval Carcass    1173.45 Adult Head    798.1 Adult Eye    654.7 Adult Brain    694.4 Adult Thoracic-Abdominal Ganglion    918.8 Adult Crop    1047.6 Adult Midgut    1682 Adult Hindgut    1151.8 Adult Malpighian Tubules    2995.2 Adult Fat Body    888 Adult Salivary Gland    889.5 Adult Heart    1334.375 Adult VirginFemale Spermatheca    1080.7 Adult InseminatedFemale Spermatheca    1099.4 Adult Ovary    79.4 Adult Testis    107.8 Adult Male Accessory Gland    617.8 Adult Carcass    1178.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    798.1   NA  Eye    654.7   NA  Brain    694.4   530.35  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    918.8   NA  Crop    1047.6   1395.3  Midgut    1682   1290.9  Hindgut    1151.8   2096.5  Malpighian Tubules    2995.2   718.4  Fat Body    888   880.7  Salivary Gland    889.5   NA  Heart    1334.375   1692.75  Trachea    NA   NA  VirginFemale Spermatheca    1080.7   NA  InseminatedFemale Spermatheca    1099.4   NA  Ovary    79.4   NA  Testis    107.8   NA  Male Accessory Gland    617.8   1173.45  Carcass    1178.9 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    168 central nervous system, larvae L3    119 central nervous system, pupae P8    69 head, virgin 1-day female    162 head, virgin 4-day female    173 head, virgin 20-day female    140 head, mated 1-day female    202 head, mated 4-day female    160 head, mated 20-day female    160 head, mated 1-day male    226 head, mated 4-day male    238 head, mated 20-day male    310 salivary gland, larvae L3 wandering    45 salivary gland, white prepupae    114 digestive system, larvae L3 wandering    255 digestive system, 1-day adult    415 digestive system, 4-day adult    578 digestive system, 20-day adult    457 fat body, larvae L3 wandering    450 fat body, white prepupae    352 fat body, pupae P8    120 carcass, larvae L3 wandering    196 carcass, 1-day adult    284 carcass, 4-day adult    305 carcass, 20-day adult    279 ovary, virgin 4-day female    15 ovary, mated 4-day female    24 testis, mated 4-day male    28 accessory gland, mated 4-day male    80 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (168) central nervous system, larvae L3  (119) central nervous system, pupae P8  (69) head, virgin 1-day female  (162) head, virgin 4-day female  (173) head, virgin 20-day female  (140) head, mated 1-day female  (202) head, mated 4-day female  (160) head, mated 20-day female  (160) head, mated 1-day male  (226) head, mated 4-day male  (238) head, mated 20-day male  (310) salivary gland, larvae L3 wandering  (45) salivary gland, white prepupae  (114) digestive system, larvae L3 wandering  (255) digestive system, 1-day adult  (415) digestive system, 4-day adult  (578) digestive system, 20-day adult  (457) fat body, larvae L3 wandering  (450) fat body, white prepupae  (352) fat body, pupae P8  (120) carcass, larvae L3 wandering  (196) carcass, 1-day adult  (284) carcass, 4-day adult  (305) carcass, 20-day adult  (279) ovary, virgin 4-day female    15 ovary, mated 4-day female    24 testis, mated 4-day male  (28) accessory gland, mated 4-day male  (80) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (168) central nervous system, larvae L3  (119) central nervous system, pupae P8    69 head, virgin 1-day female  (162) head, virgin 4-day female  (173) head, virgin 20-day female  (140) head, mated 1-day female  (202) head, mated 4-day female  (160) head, mated 20-day female  (160) head, mated 1-day male  (226) head, mated 4-day male  (238) head, mated 20-day male  (310) salivary gland, larvae L3 wandering    45 salivary gland, white prepupae  (114) digestive system, larvae L3 wandering  (255) digestive system, 1-day adult  (415) digestive system, 4-day adult  (578) digestive system, 20-day adult  (457) fat body, larvae L3 wandering  (450) fat body, white prepupae  (352) fat body, pupae P8  (120) carcass, larvae L3 wandering  (196) carcass, 1-day adult  (284) carcass, 4-day adult  (305) carcass, 20-day adult  (279) ovary, virgin 4-day female    15 ovary, mated 4-day female    24 testis, mated 4-day male    28 accessory gland, mated 4-day male    80 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    168 central nervous system, larvae L3    119 central nervous system, pupae P8    69 head, virgin 1-day female    162 head, virgin 4-day female    173 head, virgin 20-day female    140 head, mated 1-day female    202 head, mated 4-day female    160 head, mated 20-day female    160 head, mated 1-day male    226 head, mated 4-day male    238 head, mated 20-day male    310 salivary gland, larvae L3 wandering    45 salivary gland, white prepupae    114 digestive system, larvae L3 wandering    255 digestive system, 1-day adult    415 digestive system, 4-day adult    578 digestive system, 20-day adult    457 fat body, larvae L3 wandering    450 fat body, white prepupae    352 fat body, pupae P8    120 carcass, larvae L3 wandering    196 carcass, 1-day adult    284 carcass, 4-day adult    305 carcass, 20-day adult    279 ovary, virgin 4-day female    15 ovary, mated 4-day female    24 testis, mated 4-day male    28 accessory gland, mated 4-day male    80 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    168 central nervous system, larvae L3    119 central nervous system, pupae P8    69 head, virgin 1-day female    162 head, virgin 4-day female    173 head, virgin 20-day female    140 head, mated 1-day female    202 head, mated 4-day female    160 head, mated 20-day female    160 head, mated 1-day male    226 head, mated 4-day male    238 head, mated 20-day male    310 salivary gland, larvae L3 wandering    45 salivary gland, white prepupae    114 digestive system, larvae L3 wandering    255 digestive system, 1-day adult    415 digestive system, 4-day adult    578 digestive system, 20-day adult    457 fat body, larvae L3 wandering    450 fat body, white prepupae    352 fat body, pupae P8    120 carcass, larvae L3 wandering    196 carcass, 1-day adult    284 carcass, 4-day adult    305 carcass, 20-day adult    279 ovary, virgin 4-day female    15 ovary, mated 4-day female    24 testis, mated 4-day male    28 accessory gland, mated 4-day male    80 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (168) central nervous system, larvae L3  (119) central nervous system, pupae P8  (69) head, virgin 1-day female  (162) head, virgin 4-day female  (173) head, virgin 20-day female  (140) head, mated 1-day female  (202) head, mated 4-day female  (160) head, mated 20-day female  (160) head, mated 1-day male  (226) head, mated 4-day male  (238) head, mated 20-day male  (310) salivary gland, larvae L3 wandering  (45) salivary gland, white prepupae  (114) digestive system, larvae L3 wandering  (255) digestive system, 1-day adult  (415) digestive system, 4-day adult  (578) digestive system, 20-day adult  (457) fat body, larvae L3 wandering  (450) fat body, white prepupae  (352) fat body, pupae P8  (120) carcass, larvae L3 wandering  (196) carcass, 1-day adult  (284) carcass, 4-day adult  (305) carcass, 20-day adult  (279) ovary, virgin 4-day female    15 ovary, mated 4-day female    24 testis, mated 4-day male  28 accessory gland, mated 4-day male  (80) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (168) central nervous system, larvae L3  119 central nervous system, pupae P8    69 head, virgin 1-day female  (162) head, virgin 4-day female  (173) head, virgin 20-day female  140 head, mated 1-day female  (202) head, mated 4-day female  (160) head, mated 20-day female  (160) head, mated 1-day male  (226) head, mated 4-day male  (238) head, mated 20-day male  (310) salivary gland, larvae L3 wandering    45 salivary gland, white prepupae  114 digestive system, larvae L3 wandering  (255) digestive system, 1-day adult  (415) digestive system, 4-day adult  (578) digestive system, 20-day adult  (457) fat body, larvae L3 wandering  (450) fat body, white prepupae  (352) fat body, pupae P8  120 carcass, larvae L3 wandering  (196) carcass, 1-day adult  (284) carcass, 4-day adult  (305) carcass, 20-day adult  (279) ovary, virgin 4-day female    15 ovary, mated 4-day female    24 testis, mated 4-day male    28 accessory gland, mated 4-day male    80 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    168 central nervous system, larvae L3    119 central nervous system, pupae P8    69 head, virgin 1-day female    162 head, virgin 4-day female    173 head, virgin 20-day female    140 head, mated 1-day female    202 head, mated 4-day female    160 head, mated 20-day female    160 head, mated 1-day male    226 head, mated 4-day male    238 head, mated 20-day male    310 salivary gland, larvae L3 wandering    45 salivary gland, white prepupae    114 digestive system, larvae L3 wandering    255 digestive system, 1-day adult    415 digestive system, 4-day adult    578 digestive system, 20-day adult    457 fat body, larvae L3 wandering    450 fat body, white prepupae    352 fat body, pupae P8    120 carcass, larvae L3 wandering    196 carcass, 1-day adult    284 carcass, 4-day adult    305 carcass, 20-day adult    279 ovary, virgin 4-day female    15 ovary, mated 4-day female    24 testis, mated 4-day male    28 accessory gland, mated 4-day male    80 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages, in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    7 embryo 08-10hr    14 embryo 10-12hr    36 embryo 12-14hr    48 embryo 14-16hr    60 embryo 16-18hr    83 embryo 18-20hr    114 embryo 20-22hr    181 embryo 22-24hr    187 larva L1    105 larva L2    94 larva L3 12hr old    100 larva L3 puffstage 1-2    82 larva L3 puffstage 3-6    90 larva L3 puffstage 7-9    72 white prepupae new    89 white prepupae 12hr    74 white prepupae 24hr    78 pupae 2d postWPP    66 pupae 3d postWPP    45 pupae 4d postWPP    49 adult male 01day    88 adult male 05day    98 adult male 30day    117 adult female 01day    63 adult female 05day    30 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    7 embryo 08-10hr    14 embryo 10-12hr  (36) embryo 12-14hr  (48) embryo 14-16hr  (60) embryo 16-18hr  (83) embryo 18-20hr  (114) embryo 20-22hr  (181) embryo 22-24hr  (187) larva L1  (105) larva L2  (94) larva L3 12hr old  (100) larva L3 puffstage 1-2  (82) larva L3 puffstage 3-6  (90) larva L3 puffstage 7-9  (72) white prepupae new  (89) white prepupae 12hr  (74) white prepupae 24hr  (78) pupae 2d postWPP  (66) pupae 3d postWPP  (45) pupae 4d postWPP  (49) adult male 01day  (88) adult male 05day  (98) adult male 30day  (117) adult female 01day  (63) adult female 05day  (30) adult female 30day  (37) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    7 embryo 08-10hr    14 embryo 10-12hr    36 embryo 12-14hr    48 embryo 14-16hr    60 embryo 16-18hr    83 embryo 18-20hr  (114) embryo 20-22hr  (181) embryo 22-24hr  (187) larva L1  105 larva L2    94 larva L3 12hr old    100 larva L3 puffstage 1-2    82 larva L3 puffstage 3-6    90 larva L3 puffstage 7-9    72 white prepupae new    89 white prepupae 12hr    74 white prepupae 24hr    78 pupae 2d postWPP    66 pupae 3d postWPP    45 pupae 4d postWPP    49 adult male 01day    88 adult male 05day    98 adult male 30day  (117) adult female 01day    63 adult female 05day    30 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    7 embryo 08-10hr    14 embryo 10-12hr    36 embryo 12-14hr    48 embryo 14-16hr    60 embryo 16-18hr    83 embryo 18-20hr    114 embryo 20-22hr    181 embryo 22-24hr    187 larva L1    105 larva L2    94 larva L3 12hr old    100 larva L3 puffstage 1-2    82 larva L3 puffstage 3-6    90 larva L3 puffstage 7-9    72 white prepupae new    89 white prepupae 12hr    74 white prepupae 24hr    78 pupae 2d postWPP    66 pupae 3d postWPP    45 pupae 4d postWPP    49 adult male 01day    88 adult male 05day    98 adult male 30day    117 adult female 01day    63 adult female 05day    30 adult female 30day    37 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    7 embryo 08-10hr    14 embryo 10-12hr    36 embryo 12-14hr    48 embryo 14-16hr    60 embryo 16-18hr    83 embryo 18-20hr    114 embryo 20-22hr    181 embryo 22-24hr    187 larva L1    105 larva L2    94 larva L3 12hr old    100 larva L3 puffstage 1-2    82 larva L3 puffstage 3-6    90 larva L3 puffstage 7-9    72 white prepupae new    89 white prepupae 12hr    74 white prepupae 24hr    78 pupae 2d postWPP    66 pupae 3d postWPP    45 pupae 4d postWPP    49 adult male 01day    88 adult male 05day    98 adult male 30day    117 adult female 01day    63 adult female 05day    30 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    7 embryo 08-10hr    14 embryo 10-12hr  (36) embryo 12-14hr  (48) embryo 14-16hr  (60) embryo 16-18hr  (83) embryo 18-20hr  (114) embryo 20-22hr  (181) embryo 22-24hr  (187) larva L1  (105) larva L2  (94) larva L3 12hr old  (100) larva L3 puffstage 1-2  (82) larva L3 puffstage 3-6  (90) larva L3 puffstage 7-9  (72) white prepupae new  (89) white prepupae 12hr  (74) white prepupae 24hr  (78) pupae 2d postWPP  (66) pupae 3d postWPP  (45) pupae 4d postWPP  (49) adult male 01day  (88) adult male 05day  (98) adult male 30day  (117) adult female 01day  (63) adult female 05day  30 adult female 30day  (37) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    7 embryo 08-10hr    14 embryo 10-12hr    36 embryo 12-14hr    48 embryo 14-16hr    60 embryo 16-18hr    83 embryo 18-20hr  114 embryo 20-22hr  (181) embryo 22-24hr  (187) larva L1  105 larva L2    94 larva L3 12hr old    100 larva L3 puffstage 1-2    82 larva L3 puffstage 3-6    90 larva L3 puffstage 7-9    72 white prepupae new    89 white prepupae 12hr    74 white prepupae 24hr    78 pupae 2d postWPP    66 pupae 3d postWPP    45 pupae 4d postWPP    49 adult male 01day    88 adult male 05day    98 adult male 30day  117 adult female 01day    63 adult female 05day    30 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    7 embryo 08-10hr    14 embryo 10-12hr    36 embryo 12-14hr    48 embryo 14-16hr    60 embryo 16-18hr    83 embryo 18-20hr    114 embryo 20-22hr    181 embryo 22-24hr    187 larva L1    105 larva L2    94 larva L3 12hr old    100 larva L3 puffstage 1-2    82 larva L3 puffstage 3-6    90 larva L3 puffstage 7-9    72 white prepupae new    89 white prepupae 12hr    74 white prepupae 24hr    78 pupae 2d postWPP    66 pupae 3d postWPP    45 pupae 4d postWPP    49 adult male 01day    88 adult male 05day    98 adult male 30day    117 adult female 01day    63 adult female 05day    30 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    426 Schneider line 2 Sg4    206 embryonic 1182-4H    788 embryonic GM2    754 embryonic Kc167    383 embryonic S1    813 embryonic S3    208 leg disc CME L1    615 wing disc CME-W2    349 wing disc ML-DmD8    530 wing disc ML-DmD9    870 wing disc ML-DmD16-c3    737 wing disc ML-DmD21    229 wing disc ML-DmD32    1062 haltere disc ML-DmD17-c3    183 eye-antennal disc ML-DmD11    486 antennal disc ML-DmD20-c5    241 mixed discs ML-DmD4-c1    646 CNS ML-DmBG1-c1    251 CNS ML-DmBG2-c2    336 tumorous blood cells mbn2    602 ovary fGS/OSS    612 ovary OSC    1607 ovary OSS    870 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (426) Schneider line 2 Sg4  (206) embryonic 1182-4H  (788) embryonic GM2  (754) embryonic Kc167  (383) embryonic S1  (813) embryonic S3  (208) leg disc CME L1  (615) wing disc CME-W2  (349) wing disc ML-DmD8  (530) wing disc ML-DmD9  (870) wing disc ML-DmD16-c3  (737) wing disc ML-DmD21  (229) wing disc ML-DmD32  (1062) haltere disc ML-DmD17-c3  (183) eye-antennal disc ML-DmD11  (486) antennal disc ML-DmD20-c5  (241) mixed discs ML-DmD4-c1  (646) CNS ML-DmBG1-c1  (251) CNS ML-DmBG2-c2  (336) tumorous blood cells mbn2  (602) ovary fGS/OSS  (612) ovary OSC  (1607) ovary OSS  (870) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (426) Schneider line 2 Sg4  (206) embryonic 1182-4H  (788) embryonic GM2  (754) embryonic Kc167  (383) embryonic S1  (813) embryonic S3  (208) leg disc CME L1  (615) wing disc CME-W2  (349) wing disc ML-DmD8  (530) wing disc ML-DmD9  (870) wing disc ML-DmD16-c3  (737) wing disc ML-DmD21  (229) wing disc ML-DmD32  (1062) haltere disc ML-DmD17-c3  (183) eye-antennal disc ML-DmD11  (486) antennal disc ML-DmD20-c5  (241) mixed discs ML-DmD4-c1  (646) CNS ML-DmBG1-c1  (251) CNS ML-DmBG2-c2  (336) tumorous blood cells mbn2  (602) ovary fGS/OSS  (612) ovary OSC  (1607) ovary OSS  (870) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    426 Schneider line 2 Sg4    206 embryonic 1182-4H    788 embryonic GM2    754 embryonic Kc167    383 embryonic S1    813 embryonic S3    208 leg disc CME L1    615 wing disc CME-W2    349 wing disc ML-DmD8    530 wing disc ML-DmD9    870 wing disc ML-DmD16-c3    737 wing disc ML-DmD21    229 wing disc ML-DmD32    1062 haltere disc ML-DmD17-c3    183 eye-antennal disc ML-DmD11    486 antennal disc ML-DmD20-c5    241 mixed discs ML-DmD4-c1    646 CNS ML-DmBG1-c1    251 CNS ML-DmBG2-c2    336 tumorous blood cells mbn2    602 ovary fGS/OSS    612 ovary OSC    1607 ovary OSS    870 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    426 Schneider line 2 Sg4    206 embryonic 1182-4H    788 embryonic GM2    754 embryonic Kc167    383 embryonic S1    813 embryonic S3    208 leg disc CME L1    615 wing disc CME-W2    349 wing disc ML-DmD8    530 wing disc ML-DmD9    870 wing disc ML-DmD16-c3    737 wing disc ML-DmD21    229 wing disc ML-DmD32    1062 haltere disc ML-DmD17-c3    183 eye-antennal disc ML-DmD11    486 antennal disc ML-DmD20-c5    241 mixed discs ML-DmD4-c1    646 CNS ML-DmBG1-c1    251 CNS ML-DmBG2-c2    336 tumorous blood cells mbn2    602 ovary fGS/OSS    612 ovary OSC    1607 ovary OSS    870 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (426) Schneider line 2 Sg4  (206) embryonic 1182-4H  (788) embryonic GM2  (754) embryonic Kc167  (383) embryonic S1  (813) embryonic S3  (208) leg disc CME L1  (615) wing disc CME-W2  (349) wing disc ML-DmD8  (530) wing disc ML-DmD9  (870) wing disc ML-DmD16-c3  (737) wing disc ML-DmD21  (229) wing disc ML-DmD32  (1062) haltere disc ML-DmD17-c3  (183) eye-antennal disc ML-DmD11  (486) antennal disc ML-DmD20-c5  (241) mixed discs ML-DmD4-c1  (646) CNS ML-DmBG1-c1  (251) CNS ML-DmBG2-c2  (336) tumorous blood cells mbn2  (602) ovary fGS/OSS  (612) ovary OSC  (1607) ovary OSS  (870) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (426) Schneider line 2 Sg4  (206) embryonic 1182-4H  (788) embryonic GM2  (754) embryonic Kc167  (383) embryonic S1  (813) embryonic S3  (208) leg disc CME L1  (615) wing disc CME-W2  (349) wing disc ML-DmD8  (530) wing disc ML-DmD9  (870) wing disc ML-DmD16-c3  (737) wing disc ML-DmD21  (229) wing disc ML-DmD32  (1062) haltere disc ML-DmD17-c3  (183) eye-antennal disc ML-DmD11  (486) antennal disc ML-DmD20-c5  (241) mixed discs ML-DmD4-c1  (646) CNS ML-DmBG1-c1  (251) CNS ML-DmBG2-c2  (336) tumorous blood cells mbn2  (602) ovary fGS/OSS  (612) ovary OSC  (1607) ovary OSS  (870) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    426 Schneider line 2 Sg4    206 embryonic 1182-4H    788 embryonic GM2    754 embryonic Kc167    383 embryonic S1    813 embryonic S3    208 leg disc CME L1    615 wing disc CME-W2    349 wing disc ML-DmD8    530 wing disc ML-DmD9    870 wing disc ML-DmD16-c3    737 wing disc ML-DmD21    229 wing disc ML-DmD32    1062 haltere disc ML-DmD17-c3    183 eye-antennal disc ML-DmD11    486 antennal disc ML-DmD20-c5    241 mixed discs ML-DmD4-c1    646 CNS ML-DmBG1-c1    251 CNS ML-DmBG2-c2    336 tumorous blood cells mbn2    602 ovary fGS/OSS    612 ovary OSC    1607 ovary OSS    870 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    229 cold shock, 4-day adult    180 heat shock, 4-day adult    167 Cadmium 50 mM 6 hrs, larvae L3    166 Cadmium 50 mM 12 hrs, larvae L3    131 Cadmium 50 mM 48 hrs, 4-day adult    318 Cadmium 100 mM 48 hrs, 4-day adult    411 Copper 0.5 mM 12 hrs, larvae L3    309 Copper 15 mM 48 hrs, 4-day adult    352 Zinc 5 mM 12 hrs, larvae L3    339 Zinc 4.5 mM 48 hrs, 4-day adult    407 Ethanol 2.5% 3 hrs, larvae L3    182 Ethanol 5% 3 hrs, larvae L3    269 Ethanol 10% 3 hrs, larvae L3    216 Caffeine 1.5 mg/ml 4 hrs, larvae L3    400 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    527 Caffeine 25 mg/ml 48 hrs, 4-day adult    304 Paraquat 5 mM 48 hrs, 4-day adult    244 Paraquat 10 mM 48 hrs, 4-day adult    439 Rotenone 2 μg 12 hrs, larvae L3    124 Rotenone 8 μg 12 hrs, larvae L3    136 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (229) cold shock, 4-day adult  (180) heat shock, 4-day adult  (167) Cadmium 50 mM 6 hrs, larvae L3  (166) Cadmium 50 mM 12 hrs, larvae L3  (131) Cadmium 50 mM 48 hrs, 4-day adult  (318) Cadmium 100 mM 48 hrs, 4-day adult  (411) Copper 0.5 mM 12 hrs, larvae L3  (309) Copper 15 mM 48 hrs, 4-day adult  (352) Zinc 5 mM 12 hrs, larvae L3  (339) Zinc 4.5 mM 48 hrs, 4-day adult  (407) Ethanol 2.5% 3 hrs, larvae L3  (182) Ethanol 5% 3 hrs, larvae L3  (269) Ethanol 10% 3 hrs, larvae L3  (216) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (400) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (527) Caffeine 25 mg/ml 48 hrs, 4-day adult  (304) Paraquat 5 mM 48 hrs, 4-day adult  (244) Paraquat 10 mM 48 hrs, 4-day adult  (439) Rotenone 2 μg 12 hrs, larvae L3  (124) Rotenone 8 μg 12 hrs, larvae L3  (136) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (229) cold shock, 4-day adult  (180) heat shock, 4-day adult  (167) Cadmium 50 mM 6 hrs, larvae L3  (166) Cadmium 50 mM 12 hrs, larvae L3  (131) Cadmium 50 mM 48 hrs, 4-day adult  (318) Cadmium 100 mM 48 hrs, 4-day adult  (411) Copper 0.5 mM 12 hrs, larvae L3  (309) Copper 15 mM 48 hrs, 4-day adult  (352) Zinc 5 mM 12 hrs, larvae L3  (339) Zinc 4.5 mM 48 hrs, 4-day adult  (407) Ethanol 2.5% 3 hrs, larvae L3  (182) Ethanol 5% 3 hrs, larvae L3  (269) Ethanol 10% 3 hrs, larvae L3  (216) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (400) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (527) Caffeine 25 mg/ml 48 hrs, 4-day adult  (304) Paraquat 5 mM 48 hrs, 4-day adult  (244) Paraquat 10 mM 48 hrs, 4-day adult  (439) Rotenone 2 μg 12 hrs, larvae L3  (124) Rotenone 8 μg 12 hrs, larvae L3  (136) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    229 cold shock, 4-day adult    180 heat shock, 4-day adult    167 Cadmium 50 mM 6 hrs, larvae L3    166 Cadmium 50 mM 12 hrs, larvae L3    131 Cadmium 50 mM 48 hrs, 4-day adult    318 Cadmium 100 mM 48 hrs, 4-day adult    411 Copper 0.5 mM 12 hrs, larvae L3    309 Copper 15 mM 48 hrs, 4-day adult    352 Zinc 5 mM 12 hrs, larvae L3    339 Zinc 4.5 mM 48 hrs, 4-day adult    407 Ethanol 2.5% 3 hrs, larvae L3    182 Ethanol 5% 3 hrs, larvae L3    269 Ethanol 10% 3 hrs, larvae L3    216 Caffeine 1.5 mg/ml 4 hrs, larvae L3    400 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    527 Caffeine 25 mg/ml 48 hrs, 4-day adult    304 Paraquat 5 mM 48 hrs, 4-day adult    244 Paraquat 10 mM 48 hrs, 4-day adult    439 Rotenone 2 μg 12 hrs, larvae L3    124 Rotenone 8 μg 12 hrs, larvae L3    136 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    229 cold shock, 4-day adult    180 heat shock, 4-day adult    167 Cadmium 50 mM 6 hrs, larvae L3    166 Cadmium 50 mM 12 hrs, larvae L3    131 Cadmium 50 mM 48 hrs, 4-day adult    318 Cadmium 100 mM 48 hrs, 4-day adult    411 Copper 0.5 mM 12 hrs, larvae L3    309 Copper 15 mM 48 hrs, 4-day adult    352 Zinc 5 mM 12 hrs, larvae L3    339 Zinc 4.5 mM 48 hrs, 4-day adult    407 Ethanol 2.5% 3 hrs, larvae L3    182 Ethanol 5% 3 hrs, larvae L3    269 Ethanol 10% 3 hrs, larvae L3    216 Caffeine 1.5 mg/ml 4 hrs, larvae L3    400 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    527 Caffeine 25 mg/ml 48 hrs, 4-day adult    304 Paraquat 5 mM 48 hrs, 4-day adult    244 Paraquat 10 mM 48 hrs, 4-day adult    439 Rotenone 2 μg 12 hrs, larvae L3    124 Rotenone 8 μg 12 hrs, larvae L3    136 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (229) cold shock, 4-day adult  (180) heat shock, 4-day adult  (167) Cadmium 50 mM 6 hrs, larvae L3  (166) Cadmium 50 mM 12 hrs, larvae L3  (131) Cadmium 50 mM 48 hrs, 4-day adult  (318) Cadmium 100 mM 48 hrs, 4-day adult  (411) Copper 0.5 mM 12 hrs, larvae L3  (309) Copper 15 mM 48 hrs, 4-day adult  (352) Zinc 5 mM 12 hrs, larvae L3  (339) Zinc 4.5 mM 48 hrs, 4-day adult  (407) Ethanol 2.5% 3 hrs, larvae L3  (182) Ethanol 5% 3 hrs, larvae L3  (269) Ethanol 10% 3 hrs, larvae L3  (216) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (400) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (527) Caffeine 25 mg/ml 48 hrs, 4-day adult  (304) Paraquat 5 mM 48 hrs, 4-day adult  (244) Paraquat 10 mM 48 hrs, 4-day adult  (439) Rotenone 2 μg 12 hrs, larvae L3  (124) Rotenone 8 μg 12 hrs, larvae L3  (136) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (229) cold shock, 4-day adult  (180) heat shock, 4-day adult  (167) Cadmium 50 mM 6 hrs, larvae L3  (166) Cadmium 50 mM 12 hrs, larvae L3  131 Cadmium 50 mM 48 hrs, 4-day adult  (318) Cadmium 100 mM 48 hrs, 4-day adult  (411) Copper 0.5 mM 12 hrs, larvae L3  (309) Copper 15 mM 48 hrs, 4-day adult  (352) Zinc 5 mM 12 hrs, larvae L3  (339) Zinc 4.5 mM 48 hrs, 4-day adult  (407) Ethanol 2.5% 3 hrs, larvae L3  (182) Ethanol 5% 3 hrs, larvae L3  (269) Ethanol 10% 3 hrs, larvae L3  (216) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (400) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (527) Caffeine 25 mg/ml 48 hrs, 4-day adult  (304) Paraquat 5 mM 48 hrs, 4-day adult  (244) Paraquat 10 mM 48 hrs, 4-day adult  (439) Rotenone 2 μg 12 hrs, larvae L3  124 Rotenone 8 μg 12 hrs, larvae L3  136 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    229 cold shock, 4-day adult    180 heat shock, 4-day adult    167 Cadmium 50 mM 6 hrs, larvae L3    166 Cadmium 50 mM 12 hrs, larvae L3    131 Cadmium 50 mM 48 hrs, 4-day adult    318 Cadmium 100 mM 48 hrs, 4-day adult    411 Copper 0.5 mM 12 hrs, larvae L3    309 Copper 15 mM 48 hrs, 4-day adult    352 Zinc 5 mM 12 hrs, larvae L3    339 Zinc 4.5 mM 48 hrs, 4-day adult    407 Ethanol 2.5% 3 hrs, larvae L3    182 Ethanol 5% 3 hrs, larvae L3    269 Ethanol 10% 3 hrs, larvae L3    216 Caffeine 1.5 mg/ml 4 hrs, larvae L3    400 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    527 Caffeine 25 mg/ml 48 hrs, 4-day adult    304 Paraquat 5 mM 48 hrs, 4-day adult    244 Paraquat 10 mM 48 hrs, 4-day adult    439 Rotenone 2 μg 12 hrs, larvae L3    124 Rotenone 8 μg 12 hrs, larvae L3    136 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (Graveley et al., 2011) mE1_20_mRNA_expression_cluster_15
External Data & Images
Linkouts	BDGP expression data • SD01985 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0261113
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | recessive Xrp102515 partially lethal - majority die Xrp102515 partially lethal - majority die | recessive Xrp102515 viable Xrp1BG01279 Xrp1CB05263 viable, with Scer\GAL4pnr-MD237 Xrp1GD9476 viable (with Xrp1Exel6181) Xrp1Exel6182 viable (with Xrp1Exel6182) Xrp1Exel6181 Sterility Allele fertile (with Xrp1Exel6181) Xrp1Exel6182 fertile (with Xrp1Exel6182) Xrp1Exel6181 Other Phenotypes Allele smell perception defective Xrp1BG01279 visible, with Scer\GAL4bbg-C96 Xrp1d04790 Phenotype manifest in Allele wing, with Scer\GAL4bbg-C96 Xrp1d04790
Classical Alleles ( 23 )
For All Classical Alleles Show
Allele of Xrp1 Class Mutagen Stocks Known lesion Xrp102515 P-element activity 1 Yes Xrp1142 P-element activity 1 Yes Xrp15-HA-1650 1 -- Xrp1c00560 piggyBac transposase 1 -- Xrp1c02198 piggyBac transposase 1 -- Xrp1CB-0993-3 1 -- Xrp1CB-5843-3 1 -- Xrp1d04790 1 -- Xrp1KG02098 1 -- Xrp1KG04558 1 -- Xrp1MI07118 1 -- Xrp1NP5455 1 -- Xrp15-HA-2976 0 -- Xrp1BG01279 0 Yes Xrp1c00620 piggyBac transposase 0 -- Xrp1CB05263 P-element activity 0 Yes Xrp1DG20612 0 -- Xrp1Exel6181 0 Yes Xrp1Exel6182 0 Yes Xrp1J3 gene conversion P-element activity 0 Yes Xrp1J3E1 P-element activity 0 Yes Xrp1rev P-element activity 0 Yes Xrp1unspecified 0 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Xrp1 Class Mutagen Stocks Known lesion Xrp1GD9476 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Xrp1HMS00053 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Xrp1KK104477 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Xrp1NIG.17836R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Not disrupted in	Df(3R)Cha7 (Spradling et al., 1999, BDGP Project Members, 1994-1999) Df(3R)ED2 (Ryder and Roote, 2004.11.10)
Partially disrupted in	Df(3R)Exel6181 (Akdemir et al., 2007) Df(3R)Exel6182 (Akdemir et al., 2007)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{KK104477} NA P{NIG.17836R} NA P{TRiP.HMS00053} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}Xrp1MI07118 NA P{GT1}Xrp1BG01279 NA P{hsneo}Xrp1142 NA P{PTT-GB}Xrp1CB05263 NA P{RS3}Xrp1CB-0993-3 NA P{RS3}Xrp1CB-5843-3 NA P{RS5}Xrp15-HA-1650 NA P{RS5}Xrp15-HA-2976 NA P{SUPor-P}Xrp1KG02098 NA P{SUPor-P}Xrp1KG04558 NA P{wHy}Xrp1DG20612 NA PBac{PB}Xrp1c00560 NA PBac{PB}Xrp1c00620 NA PBac{PB}Xrp1c02198 NA insertion of enhancer trap binary system P{GAL4}Xrp1J3 No P{GawB}Xrp1NP5455 No insertion of enhancer trap P{PZ}Xrp102515 No insertion of mobile activating element P{GSV1}GSd212GSd212 NA P{XP}Xrp1d04790 NA
Gene Ontology: Function, Process & Cellular Component ( 7 unique terms )
Terms Based on Experimental Evidence ( 5 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
cellular process inferred from mutant phenotype (Boutros et al., 2004) chromosome organization inferred from mutant phenotype (Akdemir et al., 2007) imaginal disc-derived wing morphogenesis inferred from mutant phenotype (Carreira et al., 2011) negative regulation of cell proliferation inferred from direct assay (Akdemir et al., 2007) olfactory behavior inferred from mutant phenotype (Sambandan et al., 2006)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
DNA binding inferred from electronic annotation with InterPro:IPR017956 (FlyBase Curators et al., 2004-) protein dimerization activity inferred from sequence or structural similarity (Fassler et al., 2002)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	gene   nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Xrp1 allele Gene References unspecified nej (Anderson et al., 2005)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 67271 DroID - A comprehensive database of gene and protein interactions. • FBgn0261113 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42267
Orthologs
OrthoDB Orthologs (12) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6ZKK5Z Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6ZKK5Z)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Xrp1     Drosophila simulans   Dsim\GD19257 Y   Drosophila sechellia   Dsec\GM17897 Y   Drosophila erecta   Dere\GG23086 Y   Drosophila yakuba   Dyak\GE25566 Y   Drosophila ananassae   Dana\GF23223 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA14691 Y   Drosophila persimilis   Dper\GL23441 Y   Drosophila willistoni   Dwil\GK22747 Y   Drosophila virilis   Dvir\GJ14549 Y   Drosophila mojavensis   Dmoj\GI24722 Y   Drosophila grimshawi   Dgri\GH18865 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD19257 Drosophila sechellia Dsec\GM17897 Drosophila erecta Dere\GG23086 Drosophila yakuba Dyak\GE25566 Drosophila ananassae Dana\GF23223 Drosophila pseudoobscura pseudoobscura Dpse\GA14691 Drosophila persimilis Dper\GL23441 Drosophila willistoni Dwil\GK22747 Drosophila virilis Dvir\GJ14549 Drosophila mojavensis Dmoj\GI24722 Drosophila grimshawi Dgri\GH18865
Stocks & Reagents
Stocks Listed in FlyBase ( 15 )
Bloomington	42466 y1 w*; Mi{MIC}Xrp1MI07118 34521 y1 sc* v1; P{TRiP.HMS00053}attP2 13611 y1 w67c23; ry506 P{SUPor-P}Xrp1KG04558 14416 y1 w67c23; ry506 P{SUPor-P}Xrp1KG02098
Harvard	- P{XP}Xrp1d04790 - PBac{PB}Xrp1c00560 - PBac{PB}Xrp1c02198
Kyoto	123401 w1118; P{RS3}Xrp1CB-0993-3 123849 w1118; P{RS3}Xrp1CB-5843-3 125319 w1118; P{RS5}Xrp15-HA-1650
VDRC	v107860 P{KK104477}VIE-260B v33010 w1118; P{GD9476}v33010
	More stocks available...
Genomic Clones ( 2 )
	BACR07D13 BACR44N12 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 182 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	SD01985 SD05793 SD09244
Other clones	FI10013
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT11768 AT20457 AT28674 GH03077 GH03845 GH06067 GH08903 GH09675 GH11713 GH12765 GH19216 GH23638 GH23880 GH26032 GH26056 GH28423 GM08609 HL02948 HL03669 HL05450 LP04745 LP10695 LP11706 LP14154 LP17919 LP18136 LP18871 LP19076 LP22409 LP23857 RE01740 RE02067 RE10456 RE12586 RE14062 RE26996 RE31089 RE33229 RE41334 RE53726 RE60656 SD02316 SD02375 SD02388 SD07617 SD09851 SD12433 SD14257 SD17846 SD18804 SD20067
Other clones	9986 10784 37814 45047 57163 59923 65152 66039 75552 98941 109184 119662 122073 148022 167152 167437 180077 189950 191428 192577 193630 214251.60 214347.56 214409.68 214535.69 473702 521927 522219 522510 523238 524836 524892 527118 528157 528166 528249 533589 542716 561820 562127 569612 569705 571334 572873 572896 AI124323 CK01.10B.G1 CK01.12C.B10 CK01.26A.A12 CK01.31D.C10 CK01.96D.H5 CK01.115B.G1 Dmel_neb_001952_0129_2719 Dmel_neb_010275_0362_0665 Dmel_neb_011088_0071_3024 Dmel_neb_011116_0134_1637 Dmel_neb_011117_0128_2066 Dmel_neb_013140_0329_0599 EC27924 EK010809 EK024927 EK027541 EK051743 EK074606 EK109210 EK110538 EK150164 EK160963 EK165120 EK168254 EK173124 EK177635 EK191613 EK193919 EK205133 EK221538 EK227908 EK242047 EK251015 EK253645 EK272334 EK291329 EK292204 EK293409 EK295108 EK295626 EN00549 EN00606 EN00813 EN01563 EN03208 EN03664 EN03903 EN06022 EN06126 EN07308 EN07315 EN08645 EN08655 EN09325 EN09820 EN11155 EN13211 EN13753 EN13904 EN15243 EN17246 EN17339 EP01016 EP06704 EP07904 EP08710 EP14830 EP22043 ESG0118a.B21_A03 FGC004F06 FGH117A12 FGM003A06 FGM003B11 FGM103A07 FGM210B07 FGM318A09 FGM324E04 GH01418 IP01986 IP06522 RH45088
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0261113 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42267
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG17836 anon-EST:Liang-2.44 (Bayraktaroglu, 2000.11.2) Source for merge of: Xrp1 l(3)02515 (Akdemir et al., 2007)
Additional comments
Other Comments
	RNAi screen using dsRNA made from templates generated with primers directed against this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004) RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004) Identification: Enhancer trap expression pattern survey for loci expressed in the ring gland. (Harvie et al., 1998)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_142504 NM_169839 NM_169840 NM_169841 NM_001104363 NM_001275789 NM_001275790 RefSeq (Proteins) • NP_650761 NP_732384 NP_732385 NP_732386 NP_001097833 NP_001262718 NP_001262719 DDBJ / EMBL / GenBank • AAF55608 AAL39923 AAN13791 AAN13792 AAN13793 AAN71643 AAN71647 ABW08700 AGB96098 AGB96099 AI124323 AI531089 AI533828 AI542779 AQ026180 AW944211 AY069778 BT001871 BT001875 CZ466558 CZ466606 CZ467764 CZ467765 Entrez Gene - A searchable database of RefSeq genes. • 42267 UniProtKB/TrEMBL • Q8I0S0 Q8IN74 Q8T9G5 Q9VE23
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • AT hook, DNA-binding motif (IPR017956) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • SD01985
Linkouts
	BioGRID - A database of protein and genetic interactions • 67271 DroID - A comprehensive database of gene and protein interactions. • FBgn0261113 DRSC - Results from RNAi screens. • FBgn0261113 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0261113 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0261113 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42267 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42267 modMine - Data generated by the modENCODE project. • FBgn0261113
Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym	2515 (Harvie et al., 1998) anon-EST:Liang-2.44   CG17836 (Sambandan et al., 2006, Reiter et al., 2007, Gruenewald et al., 2009, Buszczak et al., 2007, Baeg et al., 2007, Brodsky et al., 2004, Akdemir et al., 2007, Minidorff et al., 2007, FlyBase Curators, 2008, Kankel et al., 2007, Minidorff et al., 2007, Carreira et al., 2009, Keleman et al., 2009.8.5, Zhou et al., 2008, Ni et al., 2011.7.19, Japanese National Institute of Genetics, 2012.5.21) clone 2.44 (Liang and Biggin, 1998) l(3)02515   Xrp1 (Akdemir et al., 2007, Takahashi et al., 2012, Carreira et al., 2011) XRP1 (Akdemir et al., 2007)
Name Synonym	CG17836   lethal (3) 02515
Secondary FlyBase IDs
	FBgn0010781 FBgn0025952 FBgn0038661
References ( 44 )
Generate a list of	All references relating to this gene ( 44 )
List References by type	Research paper  ( 21 ) Supplementary material  ( 5 ) Erratum  ( 1 ) Personal communication to FlyBase  ( 13 ) FlyBase analysis  ( 2 ) Stock list  ( 1 ) Website  ( 1 )
Recent research papers ( 2 )
	Takahashi et al., 2012, Evolution 66(9): 2878--2890 Deficiency screening for genomic regions with effects on environmental sensitivity of the sensory bristles of Drosophila melanogaster. [FBrf0219405] Carreira et al., 2011, BMC Dev. Biol. 11: 32 Genetic basis of wing morphogenesis in Drosophila: sexual dimorphism and non-allometric effects of shape variation. [FBrf0214273] Show all research papers ...